spring1 (c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957)


Basic Information

Item Value
gene id spring1
gene name c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 15580470 ~ 15589491 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU421790
tgtaaaaaaaaaatatattttgatgaTGGCTGTCAATTTCAGTGCCGACTTGTTTTACATTTCCAGTCTAAATACCGGAGCCACATCCAGACCATTGCTTTATTATTCGTGAATTTTACTTTATTAGTATTAGATTGTTGGAACGGATCGCTTGTTATTAGCGGATTTAGCTGAGAATGctaaatgctagctagctagccggctgtgtttgttttgagttttttttcttttgtccctGTAGTATTAAAAACAAGCTCGAATTCGGTTGTCATCTTGGAAATGCTTAGTAcatgtttaaaattttaatagaaGTATCTAAAATCGTGCCTAAAATGGGTTAGCTGGTGGTAACTGCGCATGCGCATGGTGCATGGCCTGTcacgtttttctttttcatccaAGGTGTCTCTGAAAAACGCGATTTCAGCACGGAGTGTGTTCGTGTAGCTGAGGAGCAAGCTGATTGAGCTCCATTGCAGAGGATTTCTTGGTCgtgtctgatctgatctgatctgatctgatctggtCTGATCTGGTGCACATCCAGACCCAGGCGGCTCCATGGTGCTGCGCAGACTGCTGCGGAGGCGCTGGGTCCTGGGGGTCGTGTTCGGCTTCTCCCTCATCTACTTCCTCACCAGCACACTCAAACAGGAGGAGCGAAGCGTGCGGGATCGGACTCTGCTGGAGGCGAGGGAATCCGATCACCCCATTGCGTGGAAGGTCAAGTTCAACCTGGGCAACAGCAGCAGGCAGATCACCCAGTGCAGGAACTCCATCCAGGGAAAGAGCCTCCTCACTGACGAACTtgCAACCTCTACTGGAGCGCTTTTTGAACCGAGCTGCTGAGGGCTTTCGGAATCTCTTCACCGCGGTAGAGGATCACTTTGAGCTGTGTTTGGCGAAATGCCGCACCTCCTCACAGAGCGTCCAGCATGAGAACACGTACAGAAACCCCCAGGCGAAGTACTGTTATGGTGAAAGCCCCCCTGAGCTCCTGCCCATCTGAAGGAGAAAGTATTTCACACAAATATACTACCTCTTCCCATCTCCGCTCAAGTATATTTAATGGTCTTGAACTGACTGAGTCAGCATGAAGGCGTAAAGCTGCACCGGAAAAACGAAGGACGAGGCGTAATCATGTCCATGGAGCCATCTCAACCTCATCTGTTACCGtcatttacatgatattttggGTTTGTGCCACAGAAATAGGAGTTCCTATGGTTGCCAGTTTCCTAGATATACATTACTTTAACAGGAAATGCATCACTGAACTGATGTCAGAGGTTGAGGTCAGTCAGATGTGTGCAATCTGTCTGGAATAGCATGTGGGTGCAATAACTATTGCCTCAGTGGCAGACAGTAAAAGGTGGAATACTTTACAGAAGTCAGAGACCATAAACCAGATCAAATTGTAAGCAATTCTGACACAGTGATCACTTGTTAAAGTCTTGCATGTGAAGTGCTATGTATGAAAGCTAtatgttaatttaataaatgcca
>XM_026931292.2
aaaaaaaaatatattttgatgaTGGCTGTCAATTTCAGTGCCGACTTGTTTTACATTTCCAGTCTAAATACCGGAGCCACATCCAGACCATTGCTTTATTATTCGTGAATTTTACTTTATTAGTATTAGATTGTTGGAACGGATCGCTTGTTATTAGCGGATTTAGCTGAGAATGctaaatgctagctagctagccggctgtgtttgttttgagttttttttcttttgtccctGTAGTATTAAAAACAAGCTCGAATTCGGTTGTCATCTTGGAAATGCTTAGTAcatgtttaaaattttaatagaaGTATCTAAAATCGTGCCTAAAATGGGTTAGCTGGTGGTAACTGCGCATGCGCATGGTGCATGGCCTGTcacgtttttctttttcatccaAGGTGTCTCTGAAAAACGCGATTTCAGCACGGAGTGTGTTCGTGTAGCTGAGGAGCAAGCTGATTGAGCTCCATTGCAGAGGATTTCTTGGTCgtgtctgatctgatctgatctgatctgatctggtCTGATCTGGTGCACATCCAGACCCAGGCGGCTCCATGGTGCTGCGCAGACTGCTGCGGAGGCGCTGGGTCCTGGGGGTCGTGTTCGGCTTCTCCCTCATCTACTTCCTCACCAGCACACTCAAACAGGAGGAGCGAAGCGTGCGGGATCGGACTCTGCTGGAGGCGAGGGAATCCGATCACCCCATTGCGTGGAAGGTCAAGTTCAACCTGGGCAACAGCAGCAGGCAGATCACCCAGTGCAGGAACTCCATCCAGGGAAAGAGCCTCCTCACTGACGAACTtggttatgtgtgtgagaggaaggACCTGCTGGTGAACGGGTGCTGTAACGTGAACGCGCCACGCTCAGGGCAGTACATGTGTAAGAGCTGTCTGCCCAACGGCTGCTGCAGCATCTATGAGTACTGCGTGTCCTGCTGCCTCCAGCCCGACAAGCAACCTCTACTGGAGCGCTTTTTGAACCGAGCTGCTGAGGGCTTTCGGAATCTCTTCACCGCGGTAGAGGATCACTTTGAGCTGTGTTTGGCGAAATGCCGCACCTCCTCACAGAGCGTCCAGCATGAGAACACGTACAGAAACCCCCAGGCGAAGTACTGTTATGGTGAAAGCCCCCCTGAGCTCCTGCCCATCTGAAGGAGAAAGTATTTCACACAAATATACTACCTCTTCCCATCTCCGCTCAAGTATATTTAATGGTCTTGAACTGACTGAGTCAGCATGAAGGCGTAAAGCTGCACCGGAAAAACGAAGGACGAGGCGTAATCATGTCCATGGAGCCATCTCAACCTCATCTGTTACCGtcatttacatgatattttggGTTTGTGCCACAGAAATAGGAGTTCCTATGGTTGCCAGTTTCCTAGATATACATTACTTTAACAGGAAATGCATCACTGAACTGATGTCAGAGGTTGAGGTCAGTCAGATGTGTGCAATCTGTCTGGAATAGCATGTGGGTGCAATAACTATTGCCTCAGTGGCAGACAGTAAAAGGTGGAATACTTTACAGAAGTCAGAGACCATAAACCAGATCAAATTGTAAGCAATTCTGACACAGTGATCACTTGTTAAAGTCTTGCATGTGAAGTGCTATGTATGAAAGCTAtatgttaatttaataaatgccaTTTTTACCTA

Function

NR:

description
UPF0454 protein C12orf49 homolog

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421790 False 1506 TUCP 0.46 4 15580480 15589491
XM_026931292.2 True 1664 mRNA 0.47 5 15580470 15589487

Neighbor

gene id symbol gene type direction distance location
rfc5 rfc5,LOC107668751,LOC107716544,LOC107704514 coding downstream 234675 15337484 ~ 15345795 (-)
si:dkey-98f17.5 si:dkey-98f17.5,LOC108255717,LOC108431725,LOC107755832,LOC107668759,LOC107599615,LOC106580116 coding downstream 268854 15290999 ~ 15311616 (-)
pole pole,LOC107668756 coding downstream 355297 15192658 ~ 15225173 (-)
pes pes1 coding downstream 403098 15162023 ~ 15177372 (-)
gal3st1a gal3st1,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding downstream 422452 15144185 ~ 15158018 (-)
tesca tesc coding upstream 55103 15644594 ~ 15652663 (-)
fbxo21 fbxo21,LOC107726726,LOC102799747 coding upstream 67165 15656656 ~ 15668318 (-)
zgc:112294 LOC108255850 coding upstream 239816 15829307 ~ 15832933 (-)
scarf2 scarf2 coding upstream 258080 15847571 ~ 15884626 (-)
hscb hscb coding upstream 795367 16384858 ~ 16392530 (-)
G355916 NA non-coding downstream 57007 15520075 ~ 15523463 (-)
G355848 NA non-coding downstream 199795 15324487 ~ 15380675 (-)
G355726 NA non-coding downstream 506277 15042305 ~ 15074193 (-)
G355728 NA non-coding downstream 524684 15049450 ~ 15055786 (-)
G355732 NA non-coding downstream 554154 14949535 ~ 15026316 (-)
G356143 NA non-coding upstream 210058 15799549 ~ 15800119 (-)
G356142 NA non-coding upstream 212294 15801785 ~ 15801940 (-)
G356211 NA non-coding upstream 324374 15913865 ~ 15914335 (-)
G356439 NA non-coding upstream 904557 16494048 ~ 16495690 (-)
G356493 NA non-coding upstream 1043769 16633260 ~ 16633749 (-)
ccl19a.2 NA other downstream 655811 14908796 ~ 14924659 (-)
mrpl41 mrpl41 other downstream 1855612 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4831632 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 5063265 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 5168784 10370162 ~ 10411686 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 243562 15833053 ~ 15841684 (-)
G356331 NA other upstream 550298 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 825198 16414689 ~ 16442957 (-)
si:ch211-102c2.8 LOC108255971 other upstream 874936 16464427 ~ 16478840 (-)
suds3 suds3,LOC102779790 other upstream 1570457 17159948 ~ 17175726 (-)

Expression


Co-expression Network