LOC113524989


Basic Information

Item Value
gene id LOC113524989
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1425099 ~ 1431481 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911400.2
CTTTAGAATGTGATGGGCTCGAAATATCGCGATATTTCCTCGGTTCAACGAGAGGCTGGTGTGTTTGTTCCTGTGCAGTAGCACAGAGTTTCTGTATTTCAGAGAGCTGCTGAACTACTGGAGTGAAACTCAAAACAATCCTTCTAGCAGGTGCTGATAAAACAAGCTTTTCCACAGTGCAGATGTTGTAACCTCTGGAACACAAAAAGAAATCTCTACAGCACCTCTTAAAGCTTAGTTCTGTTTAAGCTCTGCAGGAATGGAGCACAGTCCTGTCCTTATGGAAGGCCTGTTCTTCCTCATGATTAGTTTTCCTCACACATCTGCAGacacacactctctgcagTACCTCTACACTGCAGTCACACCAGGAATAAATTTCCCAGAGTTCACTGCTGTTGGTCTGGTGgatggagagcagtttgtgTACTACGACAACAACATCACAGAGATGATCCCAAAGACGGAGTGGATAAATAAGATTGATGCTGATGCTCCAGATTACTGGAAAAACCAGACACAGAAGATGCAGAGTGATCAGGAGAACCTCAAACAGCTCTTAGCTACAGTAATGAAAGACTTTAATCACTCTAAAGgagTTCATACACTACAGAGGATGTTTGGCTGTGAGCTTGATGATGACGGCACCGCTAGAGGATACGATCAGTACGGTTATGATGGAGAAGATTTCATCAGTCTGGATCTGAAAACTGAAACCTGGACTGCAGTTAATGATAAAGCTGTGATCACCGAACACATGTGGGAGTCTACAGGAGCTGAGGCTAAATACATGTGGAACTTCCTGGAGGAGGAGTGTATCAAGCAGTTAAAGAAGTTTGTGTCTTACGGCAGAGAGACTCTGGAAAGGAAAGTTCATCCTGAGACGTTAGTGTTCCAGGAGTACTACTTCTTTGGAAAGATGGTGTGTCATGCTACAGGTTTCTTCCCTAAAGCACTGAATATCACCTGGCAGAAGGACGGAGAGGAGGTGCAGGAGGACGTGGAGCTCAGAGAGACGTTACCCAACCAGGATGGAAACTTCCAGAAGAGAAGCATTCTGAAAGTCCCAGATGAGGAGCTGGAGGAACGCACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGGACATAATCAAGCctaaaatcatacagtGTTTTGGGAGGTATGGACTACCAGATGAAGTGTCAGGAGGGAAGATTGCAATCATTTTTGGTATAGTTGTGGCATtcgttgctgctgttgctgaaatTCTCAtctggaagaagaagaagacatttgCCTTCAGACATGTTCCACTCAGCTCCGATGCCTaagagagatggaaagagaaatgAGGAAGGAATGTAGAGATAAGATATTGTACAGAGGAGGACGATGTGTCAGATATGAAGAGATGAGGaactctttctcacacacagagacatacaaATATCTGCGCACATTTCCCTTTCtgataaaaaaggaaatgtatataaaaaatgatgaataatcaattattattaattttgcttTATGCTGCTGctattatttctgtatttcactccacactaatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacataaaATGCAGATGAGACTGGAACAACAACGAGGAGAAATTTTAGACTAATTCTTCCCAAAAACAAATTCTCTTGTTCTTTCCTGTCTTGTTAAACTAATCATCTTCTATTAAGTTTCCCCGGAGCCTGCATTCTCCTGTAAAAGTTCTTGAATTCAGTTGTTCCCTCATCGTTGTCTGCCGTTTCTACCAAAAACTTCAACTTTGTCTCTTCAACTTTTTCCCAGAAGTGTTGTGGAATATTCAGGTGGGCTTTTGCAAACTGCGGAGATGccttgattttttattattatttttaaaaattttttggaGAGATTTGGAGTGGTTTCCTCTGCAGTTTCCTGTTTTCTTataatggaaataaacagagtTTCAGTGATCAAAGAAGGTCTTCAGGTCTTTTGCTCAGACTATTGGTTTCTTTTTCACCTCCTTTGCCACTGCATGTTATGCTCTTGGTATCATTGCAGGAAGACCACACCAAGGGAgcttttttgtacttttttgtacAGTTTATCTTATTGTGAATTGATGAACACCCAGATCTTTAGAAATTCTTTGTGGCTTTTCCAGcctcatgtttttttgtttgtttttttttttctatatttttaaaatagatatcCGTATATTGGAATCTGAAATTGTTCTGTTACCTTAAGAAATAAGTCATGTCCATTAAGAGTGTGTAACCTTTTGCAATCCGAAGTAAAGAATAATAAACTGCCAATCATCA

Function

GO: NA

KEGG:

id description
K06751 MHC1; MHC class I antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911400.2 True 2390 mRNA 0.40 7 1425099 1431481

Neighbor

gene id symbol gene type direction distance location
LOC113524983 NA coding downstream 4393 1350316 ~ 1420706 (-)
LOC113528146 NA coding downstream 108712 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 127291 1293874 ~ 1297808 (-)
LOC117595953 mvk coding downstream 167157 1251870 ~ 1257942 (-)
LOC117595980 NA coding downstream 185050 1236871 ~ 1240049 (-)
LOC113528310 NA coding upstream 1525 1433006 ~ 1442192 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 104114 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 455171 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 460787 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 469678 1901159 ~ 1907573 (-)
G348011 NA non-coding downstream 22268 1401856 ~ 1402831 (-)
LOC113524984 NA non-coding downstream 85258 1338808 ~ 1339841 (-)
G348001 NA non-coding downstream 90162 1227126 ~ 1334937 (-)
LOC117595965 NA non-coding downstream 113605 1309689 ~ 1311494 (-)
LOC117595969 NA non-coding downstream 140104 1264805 ~ 1284995 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 64929 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 151239 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 166989 1598470 ~ 1598542 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding upstream 200710 1632191 ~ 1638134 (-)
G348067 NA non-coding upstream 261662 1693143 ~ 1795534 (-)
LOC113524988 NA other downstream 55637 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 146232 1268309 ~ 1278867 (-)
G347960 NA other downstream 345960 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 500432 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 958844 418307 ~ 466255 (-)
LOC117595719 NA other upstream 18854 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 74158 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 396417 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 550573 1982054 ~ 2127645 (-)
G348145 NA other upstream 564421 1995902 ~ 1998470 (-)

Expression


Co-expression Network