LOC113528030 (LOC108255642)


Basic Information

Item Value
gene id LOC113528030
gene name LOC108255642
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 837561 ~ 844476 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916264.2
CTGTGCTGTTCTGAGCCCTGTGTGAGTTAATGATCTCAGGCGGACGGtatttaatcacacacacacacacacacactcacacacacacacacacacacactgaggatgGGGCTGCTGAAGGTGTTCCCGGTGCTAAGGCTGTGCGCGTTTCTGGCAGGAGTGAACGGTGGAAGCGTGTTGGTTTGGCCCGCCGGCGCAAGTCACTTTCTGAACATGATCCCGGTGCTGGACGCGCTGATGGACCGGGGCCACCGGGTGACGGTGCTCGTGCCGAGCGCAGCGCTTCACCGGGACGTGCGCCAAGCCGCGCGCTTCGACCTGCTCTTCTTCAACGTGTCGGTGTCGGACTCGGAGCTGCGCCTCTTGCTGGAGGACTTCCTGCGCTTTTCCATCCACGACATGGAGCGCGCTAGTCTGCTGCACATGCACGCGGAGTTCTACCGGCTGTACTCCCGTAAGCAGGACCTGACCCTCTCGTACTGCGAGGGCACGCTCCGGTACCCGCCGCTCATGGAGCAGCTGAGGCGCGCGCGCTTCGACGCGGTCCTCGCGGACCCGGTGTACCCGTGCGGCGACCTGATGGCGCACGCGCTCGGCGTGCCGTTCGTCTACACGTTCCGCTTCTCCATCGCGCACACCGTGGAGCGCCTGTGCGGCGCGAGCGCAACGCCGCCGGCCTACGTGCCGGGAGCCATCAGCGGCTTCACCGACCGCATGAGCTTCACACAGCGCGTGCGCAACGTGCTCTTCTACTGGAGTCAGGACGCCATGGCCGTCAGCCTGTGGAGGAAGTACGACCAGTACTACAGCCAGTATCTAGGTAAACCCACGAGTTACTGTGAGATGATGGGCCGAGCTGATATCTGGTTAATCAGAGCTTACTGGGACTTTGAGTTCCCACGACCTCTCCTACCAAACTTCATCTATGTTGGAGGACTGCACTGTACTCCTGCTGAACCTTTACCaaaggatatgGAGGAGTTTGTACAGAGCTCTGGAGATGATGGTGTTGTGGTGTTCACTTTGGGAACGCTGATCACAAACCTCACCATGGAGAAGTCCAACATGATCGCCTCAGCTCTCGGACAGATCCCTCAgaaggtggtGTGGAGTTACCGAGGAGAGAAGCCAGACACTCTGGCTCCAAACACCAGGATTTATTGCTGGATTCCTCAAAACGATTTACTGGGTCATCCCAAAACCCGAGCGTTTGTCACCCATGGTGGCTCGAACAGCCTGTATCAGGCCATTTACCACGGCGTGCCCATGGTGGGGATCCCGCTGTTCGCCGATCAGCCGGACAACATGGTGCACGTGCAGGCTAAAGGCGTGGCCATCGTCCTGGACTTCAGCAGCATGCAGACGCAGGACCTGGTGGACGCTCTTACAGCCATCATCCATCAACCAGAGTACAAGGCGAGCGCCCGGCGTCTGTCCCAGATCCACCACGAGCGTCCCGTCAAACCTCTGGACGAGGCAGTGTTCTGGATCGAGTACGTGATGAGGAATAAAGGTGCTAAACACCTGCGTGTAGCTGCTCATCACCTCACCTGGTACCAGTACTACCTGCTGGATGTGCTGAGCTTCTTCATCCTCATACTCGCTCTAATCCTCTACATCTTTATCAAAATCTGCAGAGTCGGCCTCTGGCTCATCAAATCAACACTAAATCACAAAAGAAAGCTAGAGTGACGCTCCtcacgtgtctgtgtgtgtcctttaCCTCATTCACACGGTGACTCATTTACCGTGTTCGATTACagtacacacaatcacacaatattaaacactgtttaacactttaacattttatcacaattatgccttttttttctttttgcattctCTTTTTCTGCATTTGTGTCCACTTCGTCATCCACGGTGTAGTAATATCAcaagcaaaatgttttttgttttctgaatttTGAAGTAAATGTAAAGATGAATTTCAAATTcgaatgaaaaatatttataaatgtctgGAATGAAACTGACTTTTTTTGGACTAAAGTCTATTGTATATGTTTTgtgcttctttttctctttattgcTACTCCTgttctttttattattcttaccataaagaaataaagcaagaCCATTGTTTTGCGTGAATATTTATAATTCCTGCTCCAGACACGTTTCAGGGTGTATGCCTGCCTCAGGCTGGTCTGTCTGAGGTGAGATGGATGATCTAACATGTCTGCTGTTTAACTAGTGTAAGCAGCTAGCTAAACAATGTGCAGCCTAAATAAACTAGATTTCAAATCCCCA
>XM_026916266.2
GCTGTAAAAAGGTCCATGGACCGTGGACTGTGTCCATCAATGTTCTCCAGGAACTGCTGCTTTAGAAGAACTAACACAAGTACGAGTTTGGGATTGCGTACGGGTAAACCCACGAGTTACTGTGAGATGATGGGCCGAGCTGATATCTGGTTAATCAGAGCTTACTGGGACTTTGAGTTCCCACGACCTCTCCTACCAAACTTCATCTATGTTGGAGGACTGCACTGTACTCCTGCTGAACCTTTACCaaaggatatgGAGGAGTTTGTACAGAGCTCTGGAGATGATGGTGTTGTGGTGTTCACTTTGGGAACGCTGATCACAAACCTCACCATGGAGAAGTCCAACATGATCGCCTCAGCTCTCGGACAGATCCCTCAgaaggtggtGTGGAGTTACCGAGGAGAGAAGCCAGACACTCTGGCTCCAAACACCAGGATTTATTGCTGGATTCCTCAAAACGATTTACTGGGTCATCCCAAAACCCGAGCGTTTGTCACCCATGGTGGCTCGAACAGCCTGTATCAGGCCATTTACCACGGCGTGCCCATGGTGGGGATCCCGCTGTTCGCCGATCAGCCGGACAACATGGTGCACGTGCAGGCTAAAGGCGTGGCCATCGTCCTGGACTTCAGCAGCATGCAGACGCAGGACCTGGTGGACGCTCTTACAGCCATCATCCATCAACCAGAGTACAAGGCGAGCGCCCGGCGTCTGTCCCAGATCCACCACGAGCGTCCCGTCAAACCTCTGGACGAGGCAGTGTTCTGGATCGAGTACGTGATGAGGAATAAAGGTGCTAAACACCTGCGTGTAGCTGCTCATCACCTCACCTGGTACCAGTACTACCTGCTGGATGTGCTGAGCTTCTTCATCCTCATACTCGCTCTAATCCTCTACATCTTTATCAAAATCTGCAGAGTCGGCCTCTGGCTCATCAAATCAACACTAAATCACAAAAGAAAGCTAGAGTGACGCTCCtcacgtgtctgtgtgtgtcctttaCCTCATTCACACGGTGACTCATTTACCGTGTTCGATTACagtacacacaatcacacaatattaaacactgtttaacactttaacattttatcacaattatgccttttttttctttttgcattctCTTTTTCTGCATTTGTGTCCACTTCGTCATCCACGGTGTAGTAATATCAcaagcaaaatgttttttgttttctgaatttTGAAGTAAATGTAAAGATGAATTTCAAATTcgaatgaaaaatatttataaatgtctgGAATGAAACTGACTTTTTTTGGACTAAAGTCTATTGTATATGTTTTgtgcttctttttctctttattgcTACTCCTgttctttttattattcttaccataaagaaataaagcaagaCCATTGTTTTGCGTGAATATTTATAATTCCTGCTCCAGACACGTTTCAGGGTGTATGCCTGCCTCAGGCTGGTCTGTCTGAGGTGAGATGGATGATCTAACATGTCTGCTGTTTAACTAGTGTAAGCAGCTAGCTAAACAATGTGCAGCCTAAATAAACTAGATTTCAAATCCCCA
>XM_026916267.2
CACGCAATACACGTTAGAGTTCAGACTTCTGATGGTATCTAACTTCTGCTCTTTCTCATAAGCGCCATATTACACCACTCCACTTTTCTGCAACCTGTACACTCAGCACTTACACCTGGTCCAGGTGAAGCTCCCAGTCTAGCCAGTTCCACATTCAATCATCAGAGGACCCAAATTTCATGTCTCCATATCTGGCTGTAAAACAGCTTttggttgtttgattttataTGATTTACAATATTTAGATTACGTCATACATGGGAGGGGCTGAGCAGGTTAAGTTGTGTGGGTTTGTATGTGGCAGCAAAAATCCAGGGATATAtggaacataaaaaaaacaaaaaaaaacacaagcctGATTTTCAGCGACAAAAATCTCACATCATAAAGGAATTGTTTGGTCGTGAGATGAGATCAGACAATGATCAGATCAGAGATCAGAGAATGTAttagtgtgtataatgtgtgttatCTGTGGCCAGTTTCGTGCTGCTGTGAAAAAGACAGCTGACGACAAATGactgtcagtgtgagaaattAGTGAATAAATCAGAGTGAGCGACGTTCTTCTAGAATCCACCGACAGAAGGACAGCAAACGCACAGCACAGTAGTGGCGATGGAGAAAGACTCGATATCTCCGGCTTACTTTGAAGAATGTTCGGGTTCATGCGAGCCCGTTTCTGCACGAGCTGATTTCCGATGACGGGAGCAGAACGTGgtgattttctttaatcgcagatctaccgttagaggatcttcatggTGTAATCTGACACAGAGAACACACTTTACAGGTAAACCCACGAGTTACTGTGAGATGATGGGCCGAGCTGATATCTGGTTAATCAGAGCTTACTGGGACTTTGAGTTCCCACGACCTCTCCTACCAAACTTCATCTATGTTGGAGGACTGCACTGTACTCCTGCTGAACCTTTACCaaaggatatgGAGGAGTTTGTACAGAGCTCTGGAGATGATGGTGTTGTGGTGTTCACTTTGGGAACGCTGATCACAAACCTCACCATGGAGAAGTCCAACATGATCGCCTCAGCTCTCGGACAGATCCCTCAgaaggtggtGTGGAGTTACCGAGGAGAGAAGCCAGACACTCTGGCTCCAAACACCAGGATTTATTGCTGGATTCCTCAAAACGATTTACTGGGTCATCCCAAAACCCGAGCGTTTGTCACCCATGGTGGCTCGAACAGCCTGTATCAGGCCATTTACCACGGCGTGCCCATGGTGGGGATCCCGCTGTTCGCCGATCAGCCGGACAACATGGTGCACGTGCAGGCTAAAGGCGTGGCCATCGTCCTGGACTTCAGCAGCATGCAGACGCAGGACCTGGTGGACGCTCTTACAGCCATCATCCATCAACCAGAGTACAAGGCGAGCGCCCGGCGTCTGTCCCAGATCCACCACGAGCGTCCCGTCAAACCTCTGGACGAGGCAGTGTTCTGGATCGAGTACGTGATGAGGAATAAAGGTGCTAAACACCTGCGTGTAGCTGCTCATCACCTCACCTGGTACCAGTACTACCTGCTGGATGTGCTGAGCTTCTTCATCCTCATACTCGCTCTAATCCTCTACATCTTTATCAAAATCTGCAGAGTCGGCCTCTGGCTCATCAAATCAACACTAAATCACAAAAGAAAGCTAGAGTGACGCTCCtcacgtgtctgtgtgtgtcctttaCCTCATTCACACGGTGACTCATTTACCGTGTTCGATTACagtacacacaatcacacaatattaaacactgtttaacactttaacattttatcacaattatgccttttttttctttttgcattctCTTTTTCTGCATTTGTGTCCACTTCGTCATCCACGGTGTAGTAATATCAcaagcaaaatgttttttgttttctgaatttTGAAGTAAATGTAAAGATGAATTTCAAATTcgaatgaaaaatatttataaatgtctgGAATGAAACTGACTTTTTTTGGACTAAAGTCTATTGTATATGTTTTgtgcttctttttctctttattgcTACTCCTgttctttttattattcttaccataaagaaataaagcaagaCCATTGTTTTGCGTGAATATTTATAATTCCTGCTCCAGACACGTTTCAGGGTGTATGCCTGCCTCAGGCTGGTCTGTCTGAGGTGAGATGGATGATCTAACATGTCTGCTGTTTAACTAGTGTAAGCAGCTAGCTAAACAATGTGCAGCCTAAATAAACTAGATTTCAAATCCCCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00699 UGT; glucuronosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916264.2 True 2274 mRNA 0.52 6 837561 841880
XM_026916266.2 False 1557 mRNA 0.45 7 837561 844476
XM_026916267.2 False 2250 mRNA 0.44 6 837561 841054

Neighbor

gene id symbol gene type direction distance location
pgam5 pgam5 coding downstream 178663 652989 ~ 658898 (-)
LOC113528517 LOC108255548 coding downstream 260125 523807 ~ 577436 (-)
LOC113528156 LOC108255548 coding downstream 321289 475494 ~ 516272 (-)
atp8b5a LOC108255417 coding downstream 367608 440336 ~ 469953 (-)
lrp13 LOC108255551 coding downstream 452161 373450 ~ 385400 (-)
tal2 LOC108255450 coding upstream 4910 849386 ~ 851691 (-)
LOC113524993 NA coding upstream 82633 927109 ~ 1240090 (-)
foxn4 foxn4,LOC107654613 coding upstream 132472 976948 ~ 980689 (-)
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding upstream 161164 1005640 ~ 1009594 (-)
LOC117595672 mmab coding upstream 241866 1086342 ~ 1108648 (-)
LOC117595934 NA non-coding downstream 223 830810 ~ 837338 (-)
G347758 NA non-coding downstream 4631 830983 ~ 832930 (-)
LOC117595935 NA non-coding downstream 7720 826664 ~ 829841 (-)
G347868 NA non-coding downstream 70965 766065 ~ 766596 (-)
G347866 NA non-coding downstream 72193 763323 ~ 765368 (-)
G347955 NA non-coding upstream 192063 1036539 ~ 1038197 (-)
G347959 NA non-coding upstream 225242 1069718 ~ 1464481 (-)
G347963 NA non-coding upstream 239276 1083752 ~ 1102884 (-)
G347969 NA non-coding upstream 250558 1095034 ~ 1277213 (-)
G347980 fam222a non-coding upstream 329641 1174117 ~ 1177170 (-)
rusc2 rusc2,LOC108255549 other downstream 371306 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 469822 364006 ~ 367739 (-)
LOC117595925 NA other downstream 600289 230525 ~ 237272 (-)
LOC113528266 NA other downstream 626856 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 635571 192549 ~ 201990 (-)
LOC113527995 LOC108255428 other upstream 12304 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 74908 919384 ~ 1701550 (-)
G347960 NA other upstream 232257 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 423833 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 512092 1356568 ~ 1369462 (-)

Expression


Co-expression Network