LOC113528265


Basic Information

Item Value
gene id LOC113528265
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 221429 ~ 226704 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916717.2
CAACTCACTGACAGCTCACTGACAACTCACTGACAACTTCatatttaaattacagaaaagaaggaagaCAATCTCACAGGAAAAATGACAAAACGCCAAACAGCGCTCGCGCTCTGCACGCCACAGTCGCTCCTCCACCGCGCatgcgcagagagagagagagagagagagagagagagagagagagagagagagagagcacacccCCGCGCTATAGTACCAGCGGAACAGACGCAGCTCACGAGCGCACATCCGAACTGTAAAGGCGAATGTTCCCCGAGCAGCGCGTGACGGAGTGGCGGATGTTGGTGAGAAGAGCAGCGCGTGGAACTGATTCTGTACTTTGGTCTGAAGTTGTTGTTGTGTCCTGTGCAGGTACTCCATCTCCAGCTCCACCTTTTGGAATGGCCAAACTCAACGAGTCTGCTGCTCTCACCTGCCACGGGAAATGTCCTGGTACAGCCCGGTGGATCATGAGCGATAAGAGACGCACTGTGGCTCAGTGTAATCAGACAACGTGTCTCGCTGAGGAGGGATTTAACATCACTCATGCTCAGTACCTGACAGGAGATCTGTCTCTCACCATCACTGCAGCTGATTACAGTAAGAGGACCTGGTACACGTGTCAGTGTGATGGAAAGGAAATCTGTCGTCTTTATCTTCGCATCGAGCGTATTGACTATAACAGACAGATCGAAcatggagactccttcactgTGGAGTTCTTCATCTCGGAGCGAGTGAAGGTCACGTTTAACAGGACGGATGATGATGGAAGGCAGAAATCTGTCACACTCTATGAAAGCAGTGAGAAGAAAGTTCACTATCACCCAGACTATGAGAAGAGAGCCTTGTCCAAGTCCTGCTTTATTCTGAATGATGTGAGAGAGTCTGACAGcggtgtgtacactgtgtgggACGCTGATAATGATGAGATCatagctacacacacactcagtgttacAGCAAAGAAGACAGATGAAAAAGTCTTGCCTCCTGTGAAAGGTGAACATGTGTACAGCAGCTGGGTTGTTGGACTCGGGTTCTGTCTGGGTTTGGTGATTGGCATTGTCCTGCATCGGTTTGTCTTTCCATTTGTATTAAAAGGCTGGGATTGGGTCAAGAGAAAAACGACAAATGCTCACAGCACTGCGGAGGAGAATGATGCTTCTGCTGAAAAAGCTCCGCTGAGCACGTCttctgtttaaggtctatattctgGTTGCAATATTAGCTGAATCAGGCAATCGGATTACggtgtttacatgactcagtactaattagaatattaccAAATTCCAATTCATATCAGAGTATTGATGAACAAAAACCTGCTGCGTGTCTGATTTCAAGCGCGAGTGCTGTCTTACGCATGCAGCCCTGGACTCGGACCAGCCTGATAAACGCCCAAATGTGCATCACTGAGTTTTAAATCTGTGTTCTAACGTAAAGTAGTTTTGTGGACTGTAActgaatgtaaatatttgtggaaaaaagagctggattgctcattagggaaaaattcacatatttacaatttatttagatttcatttatttcaaatgtacagtca
>XM_026916718.2
CTGTAAAGGCGAATGTTCCCCGAGCAGCGCGTGACGGAGTGGCGGATGTTGGTGAGAAGAGCAGCGCGTGGAACTGATTCTGTACTTTGGTCTGAAGTTGTTGTTGTGTCCTGTGCAGGGCTTCGACATGAACTTGTACATAAGCTCGGTGATCCTGTTTTGGCAGCTTGTTTTGACAAGTACTCCATCTCCAGCTCCACCTTTTGGAATGGCCAAACTCAACGAGTCTGCTGCTCTCACCTGCCACGGGAAATGTCCTGGTACAGCCCGGTGGATCATGAGCGATAAGAGACGCACTGTGGCTCAGTGTAATCAGACAACGTGTCTCGCTGAGGAGGGATTTAACATCACTCATGCTCAGTACCTGACAGGAGATCTGTCTCTCACCATCACTGCAGCTGATTACAGTAAGAGGACCTGGTACACGTGTCAGTGTGATGGAAAGGAAATCTGTCGTCTTTATCTTCGCATCGAGCGTATTGACTATAACAGACAGATCGAAcatggagactccttcactgTGGAGTTCTTCATCTCGGAGCGAGTGAAGGTCACGTTTAACAGGACGGATGATGATGGAAGGCAGAAATCTGTCACACTCTATGAAAGCAGTGAGAAGAAAGTTCACTATCACCCAGACTATGAGAAGAGAGCCTTGTCCAAGTCCTGCTTTATTCTGAATGATGTGAGAGAGTCTGACAGcggtgtgtacactgtgtgggACGCTGATAATGATGAGATCatagctacacacacactcagtgttacAGCAAAGAAGACAGATGAAAAAGTCTTGCCTCCTGTGAAAGGTGAACATGTGTACAGCAGCTGGGTTGTTGGACTCGGGTTCTGTCTGGGTTTGGTGATTGGCATTGTCCTGCATCGGTTTGTCTTTCCATTTGTATTAAAAGGCTGGGATTGGGTCAAGAGAAAAACGACAAATGCTCACAGCACTGCGGAGGAGAATGATGCTTCTGCTGAAAAAGCTCCGCTGAGCACGTCttctgtttaaggtctatattctgGTTGCAATATTAGCTGAATCAGGCAATCGGATTACggtgtttacatgactcagtactaattagaatattaccAAATTCCAATTCATATCAGAGTATTGATGAACAAAAACCTGCTGCGTGTCTGATTTCAAGCGCGAGTGCTGTCTTACGCATGCAGCCCTGGACTCGGACCAGCCTGATAAACGCCCAAATGTGCATCACTGAGTTTTAAATCTGTGTTCTAACGTAAAGTAGTTTTGTGGACTGTAActgaatgtaaatatttgtggaaaaaagagctggattgctcattagggaaaaattcacatatttacaatttatttagatttcatttatttcaaatgtacagtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916717.2 True 1573 mRNA 0.46 5 221429 226704
XM_026916718.2 False 1377 mRNA 0.45 6 221429 226447

Neighbor

gene id symbol gene type direction distance location
LOC113528268 NA coding downstream 36878 161020 ~ 184551 (-)
LOC117595912 NA coding downstream 86890 126990 ~ 134539 (-)
LOC117595913 NA coding downstream 98768 119182 ~ 122661 (-)
LOC117595914 NA coding downstream 104924 95456 ~ 116505 (-)
LOC113525747 NA coding downstream 129560 86459 ~ 91869 (-)
mybbp1a mybbp1a coding upstream 12113 238817 ~ 254544 (-)
fgf10b NA coding upstream 30823 257527 ~ 260223 (-)
adamts12 adamts12 coding upstream 34935 261639 ~ 282406 (-)
lrp13 LOC108255551 coding upstream 146746 373450 ~ 385400 (-)
atp8b5a LOC108255417 coding upstream 213632 440336 ~ 469953 (-)
G347623 NA non-coding downstream 15136 175023 ~ 206293 (-)
G347652 NA non-coding downstream 82616 120309 ~ 138813 (-)
G347634 NA non-coding downstream 186651 17440 ~ 34778 (-)
G347703 NA non-coding upstream 102210 328914 ~ 329608 (-)
G347704 NA non-coding upstream 106538 333242 ~ 333755 (-)
G347672 NA non-coding upstream 127623 354327 ~ 355340 (-)
G347723 NA non-coding upstream 168663 395367 ~ 397450 (-)
G347753 NA non-coding upstream 301244 527948 ~ 619562 (-)
LOC113528266 NA other downstream 10724 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 19439 192549 ~ 201990 (-)
LOC117595978 NA other downstream 71623 118198 ~ 149806 (-)
G347628 NA other downstream 96223 87567 ~ 125206 (-)
G347622 NA other downstream 100318 95363 ~ 121111 (-)
LOC117595925 NA other upstream 3821 230525 ~ 237272 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 137302 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 191603 418307 ~ 466255 (-)
LOC113527995 LOC108255428 other upstream 630076 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 692680 919384 ~ 1701550 (-)

Expression


Co-expression Network