LOC113528517 (LOC108255548)


Basic Information

Item Value
gene id LOC113528517
gene name LOC108255548
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 523807 ~ 577436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917111.2
TCTGCTCCGGCTCTCCGCCTCATCATGAGCTCACCTCAGTGCGGGAGAATTCCTCTCACCTCCGCGCTCTGGAGCACTTCAGCAAGCTGACACTCATGTCCGGATTATTCCTCACAATCGGgttaaagtttttaaagttgTTGAGTGAAGTGACGCGGTTTGTTTGGGGACATAAATCTCAGCCTGCGTTATGTCACTACTCTGCGTCCGAGTGAAAAAGGCCAAACTCCACGGAGCTCCAGatacatttaatgtctaTGTGACTCTGAAAGTTCAGAATGTTAAGAGCACGACCATCACAGTGCGTGGAGACCAGCCATGCTGGGAACAGGACTTCATGTTtGAGATTAACCGTTTGGATCTGGGGCTGGTGGTGGAGCTGTGGAACAAAGGTCTGATCTGGGACACCATGGTGGGAACGGCCTGGATCCCCCTCAACACCATCCGCCAATCAGATGAGGAGGGTCCGGGTAAGTGGATCATGTTGGACTCGGAGGTCCTGATGAAGGCCGATGAGATCTACGGCACTAAGAACCCGACTCCTCACCTGGTGCTGCTGGACACGCGCTTCGAGCTTCCCTTCGACATTCCGGAGGAGGAGGCGCAGTACTGGACGAAGAAGCTGGAGCGCATCAATGCTATGAGGATACACGATGAGgATGAAGAGCGAGGAATGCCGGTCCCCTCCGTCCCTTCACAGTGCTGCAGCTGGACTTACTTTGGATGGAGTGAGCAGCAGACTCTAGATGATCACGACAGCGCGGTGGACGACAGAGACAGCGACTACCGCAGCGAGACCAACAGCCGTCCTCCACGATACCACACCACGGCCCAGCCCAATTCTTCTGTCCACCAGTACCCCATGAGCCGAAGGACACGTCCACAAGCCGCATCCAAAGAGTCCGGAACCGAGTCCATACACAGCTATGAGCTGGACTACAGGGAAGGAAGGGGACCGAGcccAGAGGACAGCTCTCGGTTCGGCTCGTCTGGTAACCTGAGCCAGGCCAGTTCCCAGTTCAGCTCTGAACCAGAGGAGAGAAGTGACCCAGAGAACCAGACCCGACCTCCTGTCACCACCCGACCTCGGCTGTCCTCGGAGGATGTAGAGAAAGGTGAAAGAGAGACTCGAACGAGCTCacaggagaaaaaagaagagaatgtCCTTCCTGCCCAGTCAGAGAGttCTTTCAAAATCGATTCTCCTCCGATCGCCCCGTCCCGCCTCCGCTGGCTAAAGGCCATCAACAAAGTCCGAGTTCACCTGCACCAGCAGCAGTGAACTCGCTCCAGTCCAGCGTCCAGAGAGGAGAAATGCATCAACTCAGCTCTGCAGtaaatccacttcagggtggctTTTTACTACACCAGGTCCTTACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917111.2 True 1381 mRNA 0.55 12 523807 577436

Neighbor

gene id symbol gene type direction distance location
LOC113528156 LOC108255548 coding downstream 7535 475494 ~ 516272 (-)
atp8b5a LOC108255417 coding downstream 53854 440336 ~ 469953 (-)
lrp13 LOC108255551 coding downstream 138407 373450 ~ 385400 (-)
adamts12 adamts12 coding downstream 241401 261639 ~ 282406 (-)
fgf10b NA coding downstream 263584 257527 ~ 260223 (-)
pgam5 pgam5 coding upstream 75553 652989 ~ 658898 (-)
LOC113528030 LOC108255642 coding upstream 260125 837561 ~ 844476 (-)
tal2 LOC108255450 coding upstream 271950 849386 ~ 851691 (-)
LOC113524993 NA coding upstream 349673 927109 ~ 1240090 (-)
foxn4 foxn4,LOC107654613 coding upstream 399512 976948 ~ 980689 (-)
G347723 NA non-coding downstream 126357 395367 ~ 397450 (-)
G347672 NA non-coding downstream 168467 354327 ~ 355340 (-)
G347704 NA non-coding downstream 190052 333242 ~ 333755 (-)
G347703 NA non-coding downstream 194199 328914 ~ 329608 (-)
G347623 NA non-coding downstream 317514 175023 ~ 206293 (-)
G347759 NA non-coding upstream 57323 634759 ~ 638280 (-)
G347821 NA non-coding upstream 65550 642986 ~ 643487 (-)
G347833 NA non-coding upstream 95641 673077 ~ 676630 (-)
G347847 ier3 non-coding upstream 131118 708554 ~ 715445 (-)
G347859 NA non-coding upstream 165381 742817 ~ 746935 (-)
rusc2 rusc2,LOC108255549 other downstream 57552 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 156068 364006 ~ 367739 (-)
LOC117595925 NA other downstream 286535 230525 ~ 237272 (-)
LOC113528266 NA other downstream 313102 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 321817 192549 ~ 201990 (-)
LOC113527995 LOC108255428 other upstream 279344 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 341948 919384 ~ 1701550 (-)
G347960 NA other upstream 499297 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 690873 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 779132 1356568 ~ 1369462 (-)

Expression


Co-expression Network