mtx3 (mtx3,LOC107720223,LOC107703259,LOC107756305)


Basic Information

Item Value
gene id mtx3
gene name mtx3,LOC107720223,LOC107703259,LOC107756305
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7925615 ~ 7934493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930934.2
CGAGGCTggaaaagggggcggggctccgTCTGTTGTCATTGGCGTTCCAGCCAAACAAACATGGCGGCACCCATGGAGCTGCTGTGCTGGGGAGGCGACTGGGACTTGCCGTCTGTACACACGGAATCTTTAATTGTGCTGGCATATGCTAAATTTGCTGGTGCCAAACTTACAGTCAAGCTAGTGGACTGGACATGGAGGACTGTCACAGCCACCATTCCACAACTGCACTATGAGGGATCTACAGTAACAGAACCTACACAGATTCTCAACTTTCTCAGGCAAAATCGATTCAACGCAGATTATGAGCTGTCTGCTAAGCAGGGAGCTGACACCATGGCCTACATTGCTCTCCTGGAGGAGAAACTGCAGCCGGCTTTGctccATACATTCTGGGTGGACGCGGAGAACTACGCCAACCTGACGAGGCCTTGGTTTGCTTCCCACTCTCCATTCCCTCTCAACTTCTTTGTGCCAGGCCGCCAGGCTAGTGTAGCTCTGTCCAGGATCCTCCTGACCAAAGCGGAAGCTCCACTGCACTCAGTCGCAGAGGTGGAAGGAAAGATCTACAGCGAAGCCAAGGAGTGTCTGAATTTGCTCTCTCACAGATTGGGGTCCTCACACTTCTTCTTTGGAAACACGCCTACAAGTCTGGATGCCTTTGTTTTTGGCTACCTTGCTCCCCTCCATAAAGCCAGTCTGCCCAGTGCTCAGCTCCAGCAGCACCTAAAACAACTTCACAATCTCTGCCAGTTCTGCACTAACATCCTCAAAAACTACTTTTCTGAAGCTGCCTCTGGCTCTCCTCCCACTAGCCAGGACGCAGTCGATGCAAACCTCCAGAAACTGACGCAGCTTGTTAACAAAGAGTCCAACCTTATTGAAAAGATGGATGATAATCTGCGCAGTAGCCCTCAACACAGGCCCAGCCGACCCCATAAACCTGAAGCCAAACCTTCATCTCTGGCCACTGACAGGAACTTGACCCCTGCCTGAAAATCTCACCCACACCACACAGTGGTATCTTTctttacctatttatttatgctcATATTATCCAAGTGGCACTAAAATGGGCATGACTACAGCAGGAGTCATaagttacagtatatttatactCATTGGTTCAGCATGAGGTTGAACAAATGTGGCTTTGGTCATTACTGAAAGCTTTCTGTCAGCATACTCAGTTTTTCATTAATCTCATACTGATTTATATTATGTTCATAATCTATAAGATTGTATCTATACATCAACCAATAACAAAAAACGTGGTGGTTAGCAAAATACTAATCACagtaattaaatattcatagtCTGTTGCCATCCTTAACAGCCTTTGCCATagtgaaattatattttgtaatattcacTGTGTACACATACTGTGTATCTGATACTATCGTTCCATCAgcagtgtgtaaaaatataGATTCTTTTAGAGCTATTAGTTTGAGCTGAACTGAATCATGATTCATTTTGTTgaattgtttttcagtttttattatgGCTGTCGTTATATATTAAGGTTTGGCTTAAACATGTTGCACTACATCCTAGCAGTTAATCAACGTATCAATGTGTCACAGTCGGAAATCATCAGCCAACACCAAGCTAAATATTAGAACACTCATCATAGCTTCTCCATTCAAGTTAATATTATCATTTAGCTTAGTCTCTTGaaaaaacctacataaacagAAACTACAACATATGCAtcattctgggttttttttttttcatgacacagtgcttctttttttaaactcctgcCATTTAAAGCTAATGGATCTCTGTTGAATTTTTCCGTATGCGTGCCTTTCCTTCTGTATCCAAGTGTAATTTCCTGACCATGAACATGGttaactttaaatgaaaatattttcacattgcAAGCATGCCAGAAGTGCTCAGGAGATGCACTACACAGATTATTGTATCGATAATTAGttgcactttaaaaataaaattaaaaccattaattCACCTCACCACATATATGCAACTGGGTccagtttttccttttcatAATGTATGTTATCACTCTGTATGCCTTGTTAAAGTGTTCATACTGTACATGTCTGGTAATTCAGTGCTGAATTTTGTTTTATGAAATAGTGTATCTTGAATTCCGTTAGTTATGATGTATTTTAAAGGATCTCATCTTCATCAGTTATCAAAGgactttaaaaatgtcaaagatTTAGacacaaatgtaataaaagcgagtttataata
>XM_026930935.2
CGAGGCTggaaaagggggcggggctccgTCTGTTGTCATTGGCGTTCCAGCCAAACAAACATGGCGGCACCCATGGAGCTGCTGTGCTGGGGAGGCGACTGGGACTTGCCGTCTGTACACACGGAATCTTTAATTGTGCTGGCATATGCTAAATTTGCTGGTGCCAAACTTACAGTCAAGCTAGTGGACTGGACATGGAGGACTGTCACAGCCACCATTCCACAACTGCACTATGAGGGATCTACAGTAACAGAACCTACACAGATTCTCAACTTTCTCAGGCAAAATCGATTCAACGCAGATTATGAGCTGTCTGCTAAGCAGGGAGCTGACACCATGGCCTACATTGCTCTCCTGGAGGAGAAACTGCAGCCGGCTTTGctccATACATTCTGGGTGGACGCGGAGAACTACGCCAACCTGACGAGGCCTTGGTTTGCTTCCCACTCTCCATTCCCTCTCAACTTCTTTGTGCCAGGCCGCCAGGCTAGTGTAGCTCTGTCCAGGATCCTCCTGACCAAAGCGGAAGCTCCACTGCACTCAGTCGCAGAGGTGGAAGGAAAGATCTACAGCGAAGCCAAGGAGTGTCTGAATTTGCTCTCTCACAGATTGGGGTCCTCACACTTCTTCTTTGGAAACACGCCTACAAGTCTGGATGCCTTTGTTTTTGGCTACCTTGCTCCCCTCCATAAAGCCAGTCTGCCCAGTGCTCAGCTCCAGCAGCACCTAAAACAACTTCACAATCTCTGCCAGTTCTGCACTAACATCCTCAAAAACTACTTTTCTGAAGCTGCCTCTGATGGATGATAATCTGCGCAGTAGCCCTCAACACAGGCCCAGCCGACCCCATAAACCTGAAGCCAAACCTTCATCTCTGGCCACTGACAGGAACTTGACCCCTGCCTGAAAATCTCACCCACACCACACAGTGGTATCTTTctttacctatttatttatgctcATATTATCCAAGTGGCACTAAAATGGGCATGACTACAGCAGGAGTCATaagttacagtatatttatactCATTGGTTCAGCATGAGGTTGAACAAATGTGGCTTTGGTCATTACTGAAAGCTTTCTGTCAGCATACTCAGTTTTTCATTAATCTCATACTGATTTATATTATGTTCATAATCTATAAGATTGTATCTATACATCAACCAATAACAAAAAACGTGGTGGTTAGCAAAATACTAATCACagtaattaaatattcatagtCTGTTGCCATCCTTAACAGCCTTTGCCATagtgaaattatattttgtaatattcacTGTGTACACATACTGTGTATCTGATACTATCGTTCCATCAgcagtgtgtaaaaatataGATTCTTTTAGAGCTATTAGTTTGAGCTGAACTGAATCATGATTCATTTTGTTgaattgtttttcagtttttattatgGCTGTCGTTATATATTAAGGTTTGGCTTAAACATGTTGCACTACATCCTAGCAGTTAATCAACGTATCAATGTGTCACAGTCGGAAATCATCAGCCAACACCAAGCTAAATATTAGAACACTCATCATAGCTTCTCCATTCAAGTTAATATTATCATTTAGCTTAGTCTCTTGaaaaaacctacataaacagAAACTACAACATATGCAtcattctgggttttttttttttcatgacacagtgcttctttttttaaactcctgcCATTTAAAGCTAATGGATCTCTGTTGAATTTTTCCGTATGCGTGCCTTTCCTTCTGTATCCAAGTGTAATTTCCTGACCATGAACATGGttaactttaaatgaaaatattttcacattgcAAGCATGCCAGAAGTGCTCAGGAGATGCACTACACAGATTATTGTATCGATAATTAGttgcactttaaaaataaaattaaaaccattaattCACCTCACCACATATATGCAACTGGGTccagtttttccttttcatAATGTATGTTATCACTCTGTATGCCTTGTTAAAGTGTTCATACTGTACATGTCTGGTAATTCAGTGCTGAATTTTGTTTTATGAAATAGTGTATCTTGAATTCCGTTAGTTATGATGTATTTTAAAGGATCTCATCTTCATCAGTTATCAAAGgactttaaaaatgtcaaagatTTAGacacaaatgtaataaaagcgagtttataata

Function

symbol description
mtx3 Predicted to be involved in mitochondrion organization. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial outer membrane. Predicted to be part of SAM complex. Predicted to be active in cytoplasm. Orthologous to human MTX3 (metaxin 3).

NR:

description
PREDICTED: metaxin-3 isoform X3

GO:

id name namespace
GO:0006626 protein targeting to mitochondrion biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K17776 MTX; metaxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930934.2 True 2238 mRNA 0.41 9 7925615 7934493
XM_026930935.2 False 2149 mRNA 0.41 8 7925615 7934493

Neighbor

gene id symbol gene type direction distance location
homer1b homer1b,LOC108255354,LOC108423652,LOC107720277,LOC107703256,LOC107555494,LOC107699726 coding downstream 28930 7872192 ~ 7896685 (-)
lhfpl2b lhfpl2,LOC108423653 coding downstream 62145 7851961 ~ 7863470 (-)
otpb otpb,otp,LOC108255424,LOC108423578,LOC107587559,LOC107720233,LOC107555478 coding downstream 122835 7799209 ~ 7802780 (-)
entr1 sdccag3 coding downstream 297761 7621349 ~ 7627854 (-)
snapc4 NA coding downstream 305053 7607784 ~ 7620562 (-)
serinc5 serinc5,LOC107756307,LOC107555497,LOC107699732,LOC107703261 coding upstream 16105 7950598 ~ 7969991 (-)
cdk7 cdk7,LOC107703229,LOC107720222,LOC107699696 coding upstream 38455 7972948 ~ 7986326 (-)
lnpep lnpep coding upstream 179959 8114452 ~ 8131286 (-)
erap2 erap2 coding upstream 198638 8133131 ~ 8144462 (-)
rgmb rgmb coding upstream 214272 8148765 ~ 8161044 (-)
G351529 ckmt2,ckmt2b,LOC107602239,LOC107665780 non-coding downstream 76735 7789074 ~ 7848880 (-)
G351517 NA non-coding downstream 144062 7780780 ~ 7781553 (-)
G351362 NA non-coding downstream 283347 7548586 ~ 7642268 (-)
G351384 NA non-coding downstream 289422 7635102 ~ 7636193 (-)
G351308 NA non-coding downstream 387274 7538038 ~ 7538341 (-)
G351625 NA non-coding upstream 14707 7949200 ~ 7950503 (-)
G351687 LOC108255524 non-coding upstream 175693 8110186 ~ 8136037 (-)
G351702 NA non-coding upstream 264171 8198664 ~ 8198891 (-)
G351968 NA non-coding upstream 493779 8428272 ~ 8428551 (-)
G352006 NA non-coding upstream 600725 8535218 ~ 8535431 (-)
card9 card9 other downstream 318149 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 327653 7585472 ~ 7597962 (-)
G350867 NA other downstream 1150466 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1573243 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 1804656 6056981 ~ 6120959 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 619154 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 636024 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 706449 8640942 ~ 8654612 (-)
LOC113536894 ttc16 other upstream 1106134 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 1841473 9775966 ~ 9814416 (-)

Expression


Co-expression Network