ckap2l (LOC108255521)


Basic Information

Item Value
gene id ckap2l
gene name LOC108255521
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 14807873 ~ 14825591 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931001.2
ATTGAAGTGGGCGTTAACCCCGCAAGATTCAACTGTCGGTGTTTTGGTGGCTGGCGTGCAGGCGATAAGCTGCTGACCAACAATAGATCAAAATAAACGAATTTAATCAGAGAGAATGGAAGTAACGGATGAAGTCGCGTCGAAACTTTCGCGAACAGAGATGCGCAAGCAGAAACTTGCAGAATACCTGGCGGCGAAAGGAAGGTTAAAACCGCCCAATCCAAAGCCTTATCTAAAGAGCAGTGCTGTTCTAACAAAGCCCCCTGGAGCTGTGCAGAAATCTCACACTtctggagaaggaaaggagaaCTCAGCCCCCAGTGCCACTGATGCCAAAAAAGACAGAGCAAAAGGAAATGCACTggcagaaaagaacaaaaatttgAGAATCCTCCCCAAAGCCTCTTCTGCTCTTCTTCCACGCTTACCACTCAAATCCACTGTTTCCCAAACAGCCTCTCAGCAGGCAAGAACACACTGCAAAGAAACAGCTCGTGCAGTTAGAAATTCATCTGTCAAAGAACAGCAAACTAAACCAGCTCTACACACAAATGTCACAGCTCACAAGCAAGACAAGACTGTTAAGATGGGTCCAGCATCTGTGTCAAGCCAAGCACAAGCTCTTCACAGGTCTTCGGTGAATGCACGTACAAGCATTGTCAAGACAGACCTTCAAAAACGGCGTTTGGTCACCGGTTCAGAAAAGGTAGTGCACAAATCTCAGGTCAAATGTCCCACAACGAAAGAACGCCTAACCAACACTGTTCCAAGCTGTACAGACACAAAATCTTTAATTAGTAAACAGGCCACAGTGACGCTGAAGACAACTAAGGAAACTAACAGtttcaataaaacacacactgatctgaaGAAACCATTGAACAGGTATCCACTAGCAAAGCCAGACAGATCAGGAAAGACACAAACTGGTTCCCAAGACACACGATTATCAAACAAGGTAGGAAATAAACCAGGGCTTACTCACACACAAAGAAGTGTTCCAGTCACAGCCAGGCAAAGATCATCTCTCATGTCGACTTTTTCTAAAACTGAAAATGCTTCGAAATCAACCAGTGCGTCTGTGGCCGGTGTTACAAAAGCAGCTCCACATCAGCAGCAACGGCGTACCACATTTAAACTTCCCTCCAAGCCCACTGTTCAAGCTCCAGTGCCCCAGACTCTTCCACGCCCAACCAAGACGTCTAGCCTGACCAGGGGGCCCGTGCAGCCGAAGACTCCCAAGTCAACGTTCAATCCTGGGACAGATGGTGTCAGGACTGTCCCCCTGGGTGGCAGAAATAAACCAAACACTGCTCAAGAAGAGAGAATGCGTAAACTTAAAGAGTGGCGAGAGGCAAAAGGCATCACGTATAAACGTCCGCCGATGCCTGTACAGCCAGCGAGGAGGAAGACGGCCGCTCTTCCTCCTCAGGGATTCTGGAGTACAATGGAACAGGAGGATGAGGTCCATGGCTTTGTCTGTGCTGTTGACCAGTCTCTGAACGATTGCATCAAACTTCTTGAGCAGGGGTGTCCTGTAGACCAGGTGCAAAATGTTCTGTCTCGGGTGCCAATGGCACAGAAATTCGCTAAATATTGGATCTGCCAAGTGCGCTTGATGGAGCAAGAGGGCAACCTTGACGTGCTTCCCACATTTGAAGAAGCTGTTCGCGTAGTCAGAGAGCCTGTTGATGAACTGCGCTCTGTGGTATTTGAGATCCTTaagaagaaagaagcaaaagGTTCATCTTCAGACCGAGAGAATGATGTAGGCAGTGATGAAGATGGGGAACACAGTGTCAACGTGTGCACCCCTAAACCTGTCGGCGCACTGATCCGCGGAGAGAAAAGAGACTCGTCTGTTATAAAATACAAGATCACGGCTACTCCTGGTGGGAAAAGGAGCCAGCAGAGCCAGAGGCCAGGTTGTGTTAATGGCCATGAAATCCGTTTCTTCACCCCAGTACGCCGTTCCCTACGCATTGAGAAAACCGCCTCCCGTTACCCAGCAGTCCTGCAGGAGCACGATCCCTGTGTGACCTCTCTTCGTGAGCTCTCGACTGATGATGCAGGCCAGAGTGAGATCACATGTACAGCAGAAGCACCACCCTCTCCGCTCTACGTGTACCGGGAGAATGAAGCCCTGAAGGACCATGTGCAGATTCAACTGGTTTATGATGATGCATGATGCATGATGATGAAAACGAAATTCCCTAAGGGATACTGTtcttccaaatttttttttttaaccaagcaTGTCATCACTTTCGCTGTGTTGTGAAAGTGACACACGCTTTTCcagtctgaaagaaaaaaagcatgaaagatATGAATCATAACTGCTTGTTCAGACTTGCAGTGCTCAAGGCAGTAATAAAAAAGACATTCTTAATGTTTATAAATCTTAGGATATGGGCTTGAACTTTGGCAACATGAGAAGGAAccagcatttgtttttttttctcagttatATGTAAATTTGTTACACCATATGAAACTCTATGCTCTCACAATTTTAGTTCCTACTTGTTTCGTTTCTATTCATTGACACAGTTTAGTCTTTTcctggtttttattttaatattaaaattaattttagtaACTTGGCAGTATTACTCTGTAGATTGTATGCATTGTATTTGGCAGTGCCAATTGTATTTGGCAGTGCTTATCAGAACTCTAAAATGATTTATCAGAACATAAAAGGCGACGCATACCAGCAGGAGATAACAATAGCGGGTGTTAAACGCCTACACGAGACAAACCTGAAGCAATGTTCATGATCAGTCACTGGTCATTTCCTAATGGCTTGCGGTTCTCAAACAGAGAGAACAGGATGTTGGATTTTTGTGTAGGTGGCTATAGTAGGCTACACTGGTTTACCTTTTAGTGATGAAATAAATAGCATTTCTGTGGTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K16769 CKAP2; cytoskeleton-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931001.2 True 2919 mRNA 0.45 9 14807873 14825591

Neighbor

gene id symbol gene type direction distance location
LOC113537164 NA coding downstream 2620 14802518 ~ 14805253 (-)
LOC113537011 H2AFV,LOC106584895,LOC107386217,LOC105007341,LOC107668744 coding downstream 30068 14773130 ~ 14777805 (-)
cfap77 cfap77 coding downstream 85175 14705927 ~ 14722698 (-)
barhl1a LOC108256006,LOC100049373 coding downstream 102796 14701210 ~ 14705077 (-)
spaca9 NA coding downstream 155830 14647609 ~ 14652043 (-)
LOC113537027 cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 coding upstream 3614 14829205 ~ 14862572 (-)
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding upstream 40573 14866164 ~ 14886061 (-)
tctn2 tctn2 coding upstream 62791 14888382 ~ 14903274 (-)
ccl19a.1 NA coding upstream 78616 14904207 ~ 14906000 (-)
ydjc ydjc coding upstream 106222 14931813 ~ 14937772 (-)
G355456 NA non-coding downstream 521 14807051 ~ 14807352 (-)
G355434 purb,purba,LOC108425219 non-coding downstream 26350 14778820 ~ 14781523 (-)
G355413 NA non-coding downstream 61927 14731311 ~ 14745946 (-)
G355377 LOC108255875 non-coding downstream 100952 14629776 ~ 14706921 (-)
G355375 NA non-coding downstream 210427 14597153 ~ 14597446 (-)
G355724 NA non-coding upstream 122363 14947954 ~ 14949438 (-)
G355732 NA non-coding upstream 123944 14949535 ~ 15026316 (-)
G355725 NA non-coding upstream 127625 14953216 ~ 14954814 (-)
LOC117595933 NA non-coding upstream 143767 14969358 ~ 14971217 (-)
G355726 NA non-coding upstream 216714 15042305 ~ 15074193 (-)
mrpl41 mrpl41 other downstream 1083015 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4059035 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4290668 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4396187 10370162 ~ 10411686 (-)
LOC113536891 NA other downstream 4993457 9775966 ~ 9814416 (-)
ccl19a.2 NA other upstream 83205 14908796 ~ 14924659 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 754879 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 1007462 15833053 ~ 15841684 (-)
G356331 NA other upstream 1314198 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1589098 16414689 ~ 16442957 (-)

Expression


Co-expression Network