lhfpl2b (lhfpl2,LOC108423653)


Basic Information

Item Value
gene id lhfpl2b
gene name lhfpl2,LOC108423653
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7851961 ~ 7863470 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931002.2
tgtgtgtgtgagagagagagagagagagagaggggagatcCTGTTGAAGACTTCCTGAATGGGCCACAATGCCGGAGTGGAGAGGAAGAACAGCAGGAGAAGAATGAGCCTCCACCAGCACACAGGTGCCCAGTTTCTGTTTTCCCAACTGGATACATTGAGAATGGATGAGGATTCTGTTCTGGCAGGCAGGGATCTTGTCCAGCATGAAAGTCTGCTTGTGAAAAAGGATCTATGAAGATAACACCGCAAGTCTTCAGCTGATGCAACTCTACCAGACTTGTCTATTAGAAAGAAAAGATCAGCCTAAAGGAGTTTCATAGAATAGACAACATGTGTCATGTCATTGTAACGTGCCGCTCTATGCTTTGGACCTTGTTGAGCATTGTGGTGGCATTTGCTGAGCTGGTGGCCATCATGAGTGCTGATTGGTTAGTAGGGGTACACCACCCTTCTCAGTACAATGCCTCAGCTACTGGACCTCCAGACCCTAACCCACCTACACTTGGCCTCTACAGTCGCTGTATCCGAGTGTCTCAACAGAAGACGGTTCAGTGTGGACCATATGCTGCAGACTTTACAGAGATTGCGAGTGGATTTTGGCAGGCCTCCATTATATTCCTGGTTGTTGGAATCTTCCTGCTGTCCATAGTTGGCTTCCTCGCAGTCTTTAGCATGTGCTTTCAGAGTATCCTGGGGAAAAGCATCTTTAATGTGTGCGGCCTGCTTCAAGGCATAGCAGGTCTGTTCCTGATGCTCGGACTGATGCTCTACCCAGCAGGCTTCGGCTGTGATAAGGTGGTCAACTACTGTGGCTCTGAAGCTTCCCCGTATAAACTGGGTCAGTGTTCAGTGGGCTGGGCTCTCTACACAGCGATTGGAGGGACGGTGCTCACTTTCGTCTGCGCCATGTTCTCTGCCCAAGCCGAGATCGCCACCTCCAGCGACAAGGTGCAGGATGAGATAGACGAAGGCAGGACACTCATCTGTGTGCTGTGAAATGTCTAGCTGTAGGAGAAAACGCTTCTCTCAGAGTTAAACGTCTAGTTTACGTTGTTTTGCTGTCACCACTCTGCAGGGCTCATTGATAAGGCCATGATGTGACACGGTGCTCTCTTTTTGATACATTGCTAAGAGACTGTAGCCCAATGATAGTTGTAATGATAGTAATAAAACCCTTTACTGCAAAATtctttagttcttttttttttttgccaaattcaAAATGCGCACAGTTAGTTATTAAAAAGtagtattttgaaaatgtaatacCTTGATAATAGTGTAAACCGTATAAAAGGTTAGAATGTTAGGCTATGAAGTATGAAGTATGAATATAAGCAGATGCCTAGTGTGTATATCATACGTATTAGGAACACTTGCCTTGGGAACATACTGAGGAGCATTATCTGAGGTGAAGCTAAGATTCTGGAGGGCTTCATAACCTCAGCACCAAGGAAACCAGCATGAACAAATTTCTATGGCTTctgaatttcatttatttctctttacgTACTTGTATTTAGCCCAGATAATCCACTTAGAGCTCAAGGCAGCGCTAATATTTTGTACTGATTGTATCCTACAGTGTTAGAAACAGAGATACAGTTCCCTGTTCAAAAAGGTACAAAAGCCATGAATGCAACATATGTGACACAATATGGGAGCCCATTTGctaatatttttcttcatttgtttatttctttctttcttttccagtcAATCCTGAGGTTACAAGGGTTGTCGTAGAGGGTAGATCTAATGCTCCGGGGACACACCGTGTGTCTTTAGAGGAGGTCAAACATCATTTATATTTAGCTTTAACTATACTTAGTTCTTTTTAGTTGTGATGGCAACAGGCAACAGACATAGTGCAAAAAATAATGCTGCATTTAATTCTTACCGTTCACACACGTTTATCAAACTGTTTTGCGCAGGAGCTCATGCGGTCTCATATAACTCTCGCTgccttgatttttttcccatgtatttgttatattaacaaacatattttgtatatttttatatctgttgCTGTGCTTTTAGTGTGCAGTATGAATTaaa

Function

symbol description
lhfpl2 Predicted to be involved in development of primary female sexual characteristics; development of primary male sexual characteristics; and positive regulation of fertilization. Predicted to be located in plasma membrane and platelet alpha granule membrane. Predicted to be active in membrane.

NR:

description
PREDICTED: lipoma HMGIC fusion partner-like 2 protein

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931002.2 True 2064 mRNA 0.43 3 7851961 7863470

Neighbor

gene id symbol gene type direction distance location
otpb otpb,otp,LOC108255424,LOC108423578,LOC107587559,LOC107720233,LOC107555478 coding downstream 49181 7799209 ~ 7802780 (-)
entr1 sdccag3 coding downstream 224107 7621349 ~ 7627854 (-)
snapc4 NA coding downstream 231399 7607784 ~ 7620562 (-)
hmgcra hmgcr,hmgcra,LOC107699716,LOC107587518,LOC107720287 coding downstream 333548 7509917 ~ 7518413 (-)
ttc37 ttc37,LOC107735852 coding downstream 397463 7429317 ~ 7454498 (-)
homer1b homer1b,LOC108255354,LOC108423652,LOC107720277,LOC107703256,LOC107555494,LOC107699726 coding upstream 8722 7872192 ~ 7896685 (-)
mtx3 mtx3,LOC107720223,LOC107703259,LOC107756305 coding upstream 62145 7925615 ~ 7934493 (-)
serinc5 serinc5,LOC107756307,LOC107555497,LOC107699732,LOC107703261 coding upstream 87128 7950598 ~ 7969991 (-)
cdk7 cdk7,LOC107703229,LOC107720222,LOC107699696 coding upstream 109478 7972948 ~ 7986326 (-)
lnpep lnpep coding upstream 250982 8114452 ~ 8131286 (-)
G351529 ckmt2,ckmt2b,LOC107602239,LOC107665780 non-coding downstream 3081 7789074 ~ 7848880 (-)
G351517 NA non-coding downstream 70408 7780780 ~ 7781553 (-)
G351362 NA non-coding downstream 209693 7548586 ~ 7642268 (-)
G351384 NA non-coding downstream 215768 7635102 ~ 7636193 (-)
G351308 NA non-coding downstream 313620 7538038 ~ 7538341 (-)
G351625 NA non-coding upstream 85730 7949200 ~ 7950503 (-)
G351687 LOC108255524 non-coding upstream 246716 8110186 ~ 8136037 (-)
G351702 NA non-coding upstream 335194 8198664 ~ 8198891 (-)
G351968 NA non-coding upstream 564802 8428272 ~ 8428551 (-)
G352006 NA non-coding upstream 671748 8535218 ~ 8535431 (-)
card9 card9 other downstream 244495 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 253999 7585472 ~ 7597962 (-)
G350867 NA other downstream 1076812 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1499589 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 1731002 6056981 ~ 6120959 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 690177 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 707047 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 777472 8640942 ~ 8654612 (-)
LOC113536894 ttc16 other upstream 1177157 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 1912496 9775966 ~ 9814416 (-)

Expression


Co-expression Network