LOC113536894 (ttc16)


Basic Information

Item Value
gene id LOC113536894
gene name ttc16
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 9040627 ~ 9049408 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931043.2
TTGAACTGTTTAGAAAGTTGACCAAACAAATCTTTTAGGCTAATGATTCAGTACCGATACACTTCAAAGATTCATTCAGAAGGATTCATTACTGCACATTCCTAGTTCCCATAGCTACTATGTTTCTGAAAGTGTTGACAGAGTGAAAGGTTAACGGATTTGATtttggtgtggaaaaaaaaaatcagtttaaaactATAGCTCCAGTTCCAGATAAGATAAGTCATGGCAAGTGTTCAGGAAtagttttcttttctgtttatgAAGATTTTCTGCAGATAATAATGTCATGTTAATGTAAGACGAATGCTCAGGAGACATGAGCTCGAAAAACCTGTGTGAGATGGACGTCTCAAATGAAGCAGAGCCAAAATGCCCGTCTTCTCAAGAACTTGCCATCCAGAAACTCTTTGGCTCCAGCATCATTTTCAAACGGAACAGACATTTGCGTGGAGACCGTATTATAAAGGATAAAGCGAATACTCattaTCGAGCAGGCATGGAGGCTGTAGATCAGCTAGAGTTTGAGAGGGCTGTCACTTGCTTCACAAAAGCCATAACACTACAACCAGAACAGACTCAGTTTTATGTAGCGAGAGCAGAGGCCTATCTTCAGCTTTGTGACTTCAAGTCTGCAGCCCTGGACTATAAGCATGTTTGCTTCCTGGAACCACAGAAAAAGGCTTATATTCATCGCCTTGCCTTCATTTATTACTTGCAGGGCCAGTGTTATTGTGACCAGGGAATGTTCTTCGAGGCTTTGGAGTCTTTTGCCAAAGCAATTGAACTGAAGCCTGACTTTAGACCTTATCACATGAGAAGCTTGGCATGTCTGACGGCACTAGGTCGTTACTCAGACGCTATTCGGCTGGTCACTAACTGGCTCGAGAGTGACACTTCATCCGCTGACCTCTTCACTCTAAGAGCGCGTCTACACCACCAACTCAATCAGCCCATGCTATGTTACTATGACCTGAAGGCAGCTCTGAGGCTTAATCCGAGCTGTCCGGAGGCACGGGCCTTGCTGGAGATGATGGAGCAGGGAGCCGAGTGCTCTCGCCAGCAGGCAGTGACTAAAGCGGTGGAGGGAGAGCTGTCTGATGCCCTGGGAAAGATTACCACAGCTGTAGAGCTGAACCCTGAAAATGCACAATATTACCTTTTAAGAGGGATACTGTACCGCAGACTGAAAGACTTCACTGCCGCCATCGAGGATTTGATGCTTGCTGTGGAGTTCAGTGATGATGGAGCAAAACATCCTGAGGGAGAAAAGCCTGAGGAGTCTAAGGATCTGGAACAAGATGCTCACATTCAACTAGTGCTCACTTACAATGATTTTGCAGTCCACTGCTTCACCCAAGGCTTCTACAGCGAGGCCATCATGCTTCTCACCAAGGCCATCCatgagcagagagatgagagcgGGCTCTTTATTAACCGAGGAGACTGTTTCTTTAGGCAGAAGGAGTGGCTTTTTGCCCTGGCTGACTACCAACAGGCTGAGGAGTTGGACCCCCAAAATACAACCATTTGGCTTCGTCTGGCTGTTATTCACAACACACTGGGGCTGCACAGTTATGAGAACCTGAATTTTCAGGAGGCAGCAGACAAGTTTTCTGTGGCCATTAAGTACAACCCTGGAGTAGCTCAGTATTATGGGAATCGGGCTAAGGCTCTCAGCAGAATGCAGCGTATGGAGGAGGCCAGGCAGGATGCTATGTGTGCTCTCATCTTAGATCCTGCTAATGATGAGCTCGTCCCTCTGCTGCTCAGACTGTTCCCAGGCTGCTCTCTGTCAGATGTCATATCCAGTGGCACTGCTCAAACAGTCAAAGCTCAGCTGATGGAGCGGATCCAGACCTGGAAACTAGCAGGCTTTCCTGTGTCAAGGCTCTCCAATAAGCTTGAGAGGATGGTCCCCCGACATGACACTGACAGCCAGTCGGAAACAGATGAATCCACTCAAGATCCAGTTAGGAGCAAGGAACAGGTGAGTGAAGCGGTGAAGAAGCTCCTGCATCAGAGGCTGTCTCTAAGTTACACTGGACCTCGCATTGCCCCGCTTTGCATTACACACAACTTAGAGCCGGCTGCTTGCACTTCTAAGCGTCCATACTTCTGGAGGAACTTTTCAGGCATGGGCCTTAACTGCtaacaatatgaaaatagaagTAAAGTTACAGTGACTTGCA
>XM_026931044.2
TTGAACTGTTTAGAAAGTTGACCAAACAAATCTTTTAGGCTAATGATTCAGTACCGATACACTTCAAAGATTCATTCAGAAGGATTCATTACTGCACATTCCTAGTTCCCATAGCTACTATGTTTCTGAAAGTGTTGACAGAGTGAAAGGTTAACGGATTTGATtttggtgtggaaaaaaaaaatcagtttaaaactATAGCTCCAGTTCCAGATAAGATAAGTCATGGCAAGTGTTCAGGAAtagttttcttttctgtttatgAAGATTTTCTGCAGATAATAATGTCATGTTAATGTAAGACGAATGCTCAGGAGACATGAGCTCGAAAAACCTGTGTGAGATGGACGTCTCAAATGAAGCAGAGCCAAAATGCCCGTCTTCTCAAGAACTTGCCATCCAGAAACTCTTTGGCTCCAGCATCATTTTCAAACGGAACAGACATTTGCGTGGAGACCGTATTATAAAGGATAAAGCGAATACTCattaTCGAGCAGGCATGGAGGCTGTAGATCAGCTAGAGTTTGAGAGGGCTGTCACTTGCTTCACAAAAGCCATAACACTACAACCAGAACAGACTCAGTTTTATGTAGCGAGAGCAGAGGCCTATCTTCAGCTTTGTGACTTCAAGTCTGCAGCCCTGGACTATAAGCATGTTTGCTTCCTGGAACCACAGAAAAAGGCTTATATTCATCGCCTTGCCTTCATTTATTACTTGCAGGGCCAGTGTTATTGTGACCAGGGAATGTTCTTCGAGGCTTTGGAGTCTTTTGCCAAAGCAATTGAACTGAAGCCTGACTTTAGACCTTATCACATGAGAAGCTTGGCATGTCTGACGGCACTAGGTCGTTACTCAGACGCTATTCGGCTGGTCACTAACTGGCTCGAGAGTGACACTTCATCCGCTGACCTCTTCACTCTAAGAGCGCGTCTACACCACCAACTCAATCAGCCCATGCTATGTTACTATGACCTGAAGGCAGCTCTGAGGCTTAATCCGAGCTGTCCGGAGGCACGGGCCTTGCTGGAGATGATGGAGCAGGGAGCCGAGTGCTCTCGCCAGCAGGCAGTGACTAAAGCGGTGGAGGGAGAGCTGTCTGATGCCCTGGGAAAGATTACCACAGCTGTAGAGCTGAACCCTGAAAATGCACAATATTACCTTTTAAGAGGGATACTGTACCGCAGACTGAAAGACTTCACTGCCGCCATCGAGGATTTGATGCTTGCTGTGGAGTTCAGTGATGATGGAGCAAAACATCCTGAGGGAGAAAAGCCTGAGGAGTCTAAGGATCTGGAACAAGATGCTCACATTCAACTAGTGCTCACTTACAATGATTTTGCAGTCCACTGCTTCACCCAAGGCTTCTACAGCGAGGCCATCATGCTTCTCACCAAGGCCATCCatgagcagagagatgagagcgGGCTCTTTATTAACCGAGGAGACTGTTTCTTTAGGCAGAAGGAGTGGCTTTTTGCCCTGGCTGACTACCAACAGGCTGAGGAGTTGGACCCCCAAAATACAACCATTTGGCTTCGTCTGGCTGTTATTCACAACACACTGGGGCTGCACAGTTATGAGAACCTACTGTTCCCAGGCTGCTCTCTGTCAGATGTCATATCCAGTGGCACTGCTCAAACAGTCAAAGCTCAGCTGATGGAGCGGATCCAGACCTGGAAACTAGCAGGCTTTCCTGTGTCAAGGCTCTCCAATAAGCTTGAGAGGATGGTCCCCCGACATGACACTGACAGCCAGTCGGAAACAGATGAATCCACTCAAGATCCAGTTAGGAGCAAGGAACAGGTGAGTGAAGCGGTGAAGAAGCTCCTGCATCAGAGGCTGTCTCTAAGTTACACTGGACCTCGCATTGCCCCGCTTTGCATTACACACAACTTAGAGCCGGCTGCTTGCACTTCTAAGCGTCCATACTTCTGGAGGAACTTTTCAGGCATGGGCCTTAACTGCtaacaatatgaaaatagaagTAAAGTTACAGTGACTTGCA
>XR_004577119.1
TTTGAACTGTTTAGAAAGTTGACCAAACAAATCTTTTAGGCTAATGATTCAGTACCGATACACTTCAAAGATTCATTCAGAAGGATTCATTACTGCACATTCCTAGTTCCCATAGCTACTATGTTTCTGAAAGTGTTGACAGAGTGAAAGGTTAACGGATTTGATtttggtgtggaaaaaaaaaatcagtttaaaactATAGCTCCAGTTCCAGATAAGATAAGTCATGGCAAGTGTTCAGGAAtagttttcttttctgtttatgAAGATTTTCTGCAGATAATAATGTCATGTTAATGTAAGACGAATGCTCAGGAGACATGAGCTCGAAAAACCTGTGTGAGATGGACGTCTCAAATGAAGCAGAGCCAAAATGCCCGTCTTCTCAAGAACTTGCCATCCAGAAACTCTTTGGCTCCAGCATCATTTTCAAACGGAACAGACATTTGCGTGGAGACCGTATTATAAAGGATAAAGCGAATACTCattaTCGAGCAGGCATGGAGGCTGTAGATCAGCTAGAGTTTGAGAGGGCTGTCACTTGCTTCACAAAAGCCATAACACTACAACCAGAACAGACTCAGTTTTATGTAGCGAGAGCAGAGGCCTATCTTCAGCTTTGTGACTTCAAGTCTGCAGCCCTGGACTATAAGCATGTTTGCTTCCTGGAACCACAGAAAAAGGCTTATATTCATCGCCTTGCCTTCATTTATTACTTGCAGGGCCAGTGTTATTGTGACCAGGGAATGTTCTTCGAGGCTTTGGAGTCTTTTGCCAAAGCAATTGAACTGAAGCCTGACTTTAGACCTTATCACATGAGAAGCTTGGCATGTCTGACGGCACTAGGTCGTTACTCAGACGCTATTCGGCTGGTCACTAACTGGCTCGAGAGTGACACTTCATCCGCTGACCTCTTCACTCTAAGAGCGCGTCTACACCACCAACTCAATCAGCCCATGCTATGTTACTATGACCTGAAGGCAGCTCTGAGGCTTAATCCGAGCTGTCCGGAGGCACGGGCCTTGCTGGAGATGATGGAGCAGGGAGCCGAGTGCTCTCGCCAGCAGGCAGTGACTAAAGCGGTGGAGGGAGAGCTGTCTGATGCCCTGGGAAAGATTACCACAGCTGTAGAGCTGAACCCTGAAAATGCACAATATTACCTTTTAAGAGGGATACTGTACCGCAGACTGAAAGACTTCACTGCCGCCATCGAGGATTTGATGCTTGCTGTGGAGTTCAGTGATGATGGAGCAAAACATCCTGAGGGAGAAAAGCCTGAGGAGTCTAAGGATCTGGAACAAGATGCTCACATTCAACTAGTGCTCACTTACAATGATTTTGCAGTCCACTGCTTCACCCAAGGCTTCTACAGCGAGGCCATCATGCTTCTCACCAAGGCCATCCatgagcagagagatgagagcgGGCTCTTTATTAACCGAGGAGACTGTTTCTTTAGGCAGAAGGAGTGGCTTTTTGCCCTGGCTGACTACCAACAGGCTGAGGAGTTGGACCCCCAAAATACAACCATTTGGCTTCGTCTGGCTGTTATTCACAACACACTGGGGCTGCACAGTTATGAGAACCTGAATTTTCAGGAGGCAGCAGACAAGTTTTCTGTGGCCATTAAGTACAACCCTGGAGTAGCTCAGTATTATGGGAATCGGGCTAAGGCTCTCAGCAGAATGCAGCGTATGGAGGAGGCCAGGCAGGATGCTATGTGTGCTCTCATCTTAGATCCTGCTAATGATGAGACTGTTCCCAGGCTGCTCTCTGTCAGATGTCATATCCAGTGGCACTGCTCAAACAGTCAAAGCTCAGCTGATGGAGCGGATCCAGACCTGGAAACTAGCAGGCTTTCCTGTGTCAAGGCTCTCCAATAAGCTTGAGAGGATGGTCCCCCGACATGACACTGACAGCCAGTCGGAAACAGATGAATCCACTCAAGATCCAGTTAGGAGCAAGGAACAGGTGAGTGAAGCGGTGAAGAAGCT

Function

symbol description
ttc16 Orthologous to human TTC16 (tetratricopeptide repeat domain 16).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931043.2 True 2192 mRNA 0.47 13 9040627 9049407
XM_026931044.2 False 2006 mRNA 0.46 12 9040627 9049407
XR_004577119.1 False 1994 misc_RNA 0.47 13 9040806 9049408

Neighbor

gene id symbol gene type direction distance location
adamtsl2 adamtsl2,LOC107699701 coding downstream 9848 9019887 ~ 9030779 (-)
LOC113537151 LOC108256021,LOC108412639 coding downstream 24838 9007731 ~ 9015789 (-)
LOC113537127 LOC108256022,LOC108412640 coding downstream 34810 9003465 ~ 9005817 (-)
notch1b notch1,LOC108255797,LOC107567148,LOC107720248,LOC107672539,LOC107699763 coding downstream 61972 8939251 ~ 8978655 (-)
camsap1b camsap1 coding downstream 106390 8907796 ~ 8934237 (-)
mboat4 mboat4 coding upstream 77603 9127011 ~ 9128464 (-)
coq2 coq2 coding upstream 98641 9148049 ~ 9154689 (-)
pmpca pmpca coding upstream 120453 9169861 ~ 9176462 (-)
adgrv1 adgrv1 coding upstream 180553 9229961 ~ 9360881 (-)
polr3g polr3g,LOC107557435 coding upstream 320568 9369976 ~ 9372619 (-)
LOC113536901 NA non-coding downstream 63739 8971632 ~ 8976888 (-)
G352068 NA non-coding downstream 306759 8731083 ~ 8733868 (-)
G352036 NA non-coding downstream 411535 8628413 ~ 8629092 (-)
G352035 NA non-coding downstream 412306 8627430 ~ 8628321 (-)
G352011 NA non-coding downstream 488505 8551921 ~ 8552122 (-)
G352491 NA non-coding upstream 132740 9182148 ~ 9184754 (-)
G352498 LOC108255998 non-coding upstream 147375 9196783 ~ 9200688 (-)
G352487 NA non-coding upstream 157020 9206428 ~ 9210530 (-)
G352512 NA non-coding upstream 283358 9332766 ~ 9332971 (-)
LOC117595977 NA non-coding upstream 553992 9603400 ~ 9606974 (-)
sh2d3cb sh2d3c other downstream 386015 8640942 ~ 8654612 (-)
malt1 malt1 other downstream 454616 8570517 ~ 8586011 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other downstream 483951 8553647 ~ 8556676 (-)
card9 card9 other downstream 1433161 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 1442665 7585472 ~ 7597962 (-)
LOC113536891 NA other upstream 726558 9775966 ~ 9814416 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 1320754 10370162 ~ 10411686 (-)
LOC113536921 LOC108255872 other upstream 1459663 10509071 ~ 10517205 (-)
LOC113536823 NA other upstream 1682119 10731527 ~ 10748838 (-)
mrpl41 mrpl41 other upstream 4672697 13722105 ~ 13724858 (-)

Expression


Co-expression Network