tctn2 (tctn2)


Basic Information

Item Value
gene id tctn2
gene name tctn2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 14888382 ~ 14903274 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931112.2
TCAAAGAAGAACATAAATCTCCAAACTCCTTAGTAAACGATGCTGAAAACACGCGTAGAAGTGTGTTTGAATTTTCTGTCTCAGACGTTGATCCTGTTTGTGTTACTTGTAAAAGAAGATGCTAGATGTGATGTCGcatttctgCCTTCAGTCCTTGTTGCATCTGGTCCAAGAGCATCTGCCTTCTTGGCTGGAAACGTGAGTGATGTGTCTCTGACCATCAGCAGCGTCTCACCCTCCAATACTACAGGACGCCTCCCTCCGGCCTCCTGCGTGCCGTCCAGTCTCAGTCAATGGACTGTGTCACAAGAACCGATGGGAAAGAGCAGCCTCCTGGTGCGTGTGAGTCTGAACCGGAGCCTGCAGCTGTGTGCCGGTGCGAATGAGACAGACTGCTGTGTCCAGccgctgtgtgtgagagagactgtcagggtgtgtgcatgtctggGCAACGTTCCCCTGGCTACTCTCATCGTGCAGGCTCAGATCTACGCCCAGCTACTTCCCACTGGGCCTGTATCGGAGAATAAAACCATGATTCCTAATCAAGTGTTCCAGCCCCTTGGTTGGTGTCCATGTGACCTGACGGCAAAAGTGTGTGATGTGCGATGCTGCTGTGACCAGGACTGTGCCCCAGAGCTGTTGTGGCTTTTTGCTGGTCAGTGTCTCCCTGGACCATTTGGAGGAATTATCTCTCCTGTTCCTGACTATGTCTGCTCCTCTCAGTCGGCTGAAAATGCTCCTGATTGGTTCCCTTTTCTCTGCGTCACCTCTCCTTTAGAGAACAACCCGTTCCTTGGGCTTTTCTATGATGGCACTATTGTCACTCCGAAACCCGCTCCATCTTTCCAGGCTCAGCAGGTGGCAGCGCCTGTACCTCCTACAAACTACCGCCAGGGGGCGCCCATCTTCACCACAGACAACCAGTACTTCACCATCCCACAGGTGTCCATGCTGGGGCAGTGCTTGGAGAAGGCTCCGGTAGCATTCCTGCAGAACtttgaggctgtgtgtgtgagatctctGCAGTCCTGCCCTGCTGCACCAGCTGACCTCAGCGTGGCAGTGAGAGATGAACAGGGCGGAGTGGTCAGAGTGGCCGTCGTGGATGAAGTGATCACAGATCTCAGCCTTTTCTTATCAAGTCCTGCTGATTCTGCAGCTGAgacacagttgtgtgtgaatgtggttCTGTCTTTAAGTTATACATTTCAGTGGAAGGGGAACGGTATTACAGCCATCAGTGTGACCCGCCGCATTGGAAACATCACCCTCAGTCCTGgagTGACGCTGACGACTCGATACTCTGCAGTGTTTGCGAATGGAAATATCACAGCTCAGCCTAACTCAGGCAACCCAGgTTACCAGGTGGGAAGGCCAGTGATTGGTGGACTTTTGGATGATTCTACCGGAGCCATAGGGAGAGCTCCAATCAGCCTCTGGCAAGGAGTGAGAGATGGCCTGTGCTCCTCTGCTGACCTGAGACCAGTTCTCTATGGAATAAACTCAACGTCTGGGTGTCTGATGCCTGTCAGTTTGCTTAATCTCGCCGAGTGCAGCCAGCTCAGAGAAACTGTCCGCTCCACTTTGGCTGCTTTAGTCCCTGCGACATTGGTTTCCAGATCAGGAAAGCCAGATTTCTCCACACTGACTAACTGGACCCGAATCACTACTGTAGTACAGAACTCTAATCAGACAGCGGGAGCCTCTGGGGGTGTGTGCTCTGGCATTCCGGCTCACCTACACATTCACATCAGAAGCGTCGTCATGGGAACCATAGGCGGAGTACCACAAAAAATGATCCAGGCTGTGGAGTTAAAtTTTAAGACATCTACATGGAGTTTACAGTGTGATGCAGCTGAGGGAACCATCTGTGTGACCCCAGACCTGACACAGACTTTCCCTGTGACCTCTTCTGTGACCTTTACCGAGAATCCCATCAGCACCCAATCCCCCATGTCCAGGTTTCGCATTAACTTCACAGAGTTTGACTGTGATAGGAATGATGTGTGCTGGCCTGAGCTTGCCTTCCCTCTCACACCTTATTACACAGGTGAGCCGTACTCTCAGGCTCTGGCTAAGGGACTCATCCTTGTCTTCTTCTTTATCGCCGCATCTGTCTTAGGAACACCGTGGAGACAAATCAGACAGGCATGGAGCAATAGCTcattctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagataaagtttatggaggggaaaaagaaaggattATTATGCAACTGATTCAGTATTGAGTCATACTGTAGTCATGAGGCTTTTTCTTAGGAAAGTAATTGCGCTATTTTTGATGAACTCCACCAGTGTCATTGTTTTGTATATGCTTTTCCTTTAGAAGCCACTGTAAGATAATGCatatttgttattaatatttattgtgCTATGTTGTACAGATTTTATTGTGGAATAAATTcatattgatttttta
>XM_026931113.2
TCAAAGAAGAACATAAATCTCCAAACTCCTTAGTAAACGATGCTGAAAACACGCGTAGAAGTGTGTTTGAATTTTCTGTCTCAGACGTTGATCCTGTTTGTGTTACTTGTAAAAGAAGATGCTAGATGTGATGTCGcatttctgCCTTCAGTCCTTGTTGCATCTGGTCCAAGAGCATCTGCCTTCTTGGCTGGAAACGTGAGTGATGTGTCTCTGACCATCAGCAGCGTCTCACCCTCCAATACTACAGGACGCCTCCCTCCGGCCTCCTGCGTGCCGTCCAGTCTCAGTCAATGGACTGTGTCACAAGAACCGATGGGAAAGAGCAGCCTCCTGGTGCGTGTGAGTCTGAACCGGAGCCTGCAGCTGTGTGCCGGTGCGAATGAGACAGACTGCTGTGTCCAGccgctgtgtgtgagagagactgtcagggtgtgtgcatgtctggGCAACGTTCCCCTGGCTACTCTCATCGTGCAGGCTCAGATCTACGCCCAGCTACTTCCCACTGGGCCTGTATCGGAGAATAAAACCATGATTCCTAATCAAGTGTTCCAGCCCCTTGGTTGGTGTCCATGTGACCTGACGGCAAAAGTGTGTGATGTGCGATGCTGCTGTGACCAGGACTGTGCCCCAGAGCTGTTGTGGCTTTTTGCTGGTCAGTGTCTCCCTGGACCATTTGGAGGAATTATCTCTCCTGTTCCTGACTATGTCTGCTCCTCTCAGTCGGCTGAAAATGCTCCTGATTGGTTCCCTTTTCTCTGCGTCACCTCTCCTTTAGAGAACAACCCGTTCCTTGGGCTTTTCTATGATGGCACTATTGTCACTCCGAAACCCGCTCCATCTTTCCAGGCTCAGCAGGTGGCAGCGCCTGTACCTCCTACAAACTACCGCCAGGGGGCGCCCATCTTCACCACAGACAACCAGTACTTCACCATCCCACAGGTGTCCATGCTGGGGCAGTGCTTGGAGAAGGCTCCGGTAGCATTCCTGCAGAACtttgaggctgtgtgtgtgagatctctGCAGTCCTGCCCTGCTGCACCAGCTGACCTCAGCGTGGCAGTGAGAGATGAACAGGGCGGAGTGGTCAGAGTGGCCGTCGTGGATGAAGTGATCACAGATCTCAGCCTTTTCTTATCAAGTCCTGCTGATTCTGCTGAgacacagttgtgtgtgaatgtggttCTGTCTTTAAGTTATACATTTCAGTGGAAGGGGAACGGTATTACAGCCATCAGTGTGACCCGCCGCATTGGAAACATCACCCTCAGTCCTGgagTGACGCTGACGACTCGATACTCTGCAGTGTTTGCGAATGGAAATATCACAGCTCAGCCTAACTCAGGCAACCCAGgTTACCAGGTGGGAAGGCCAGTGATTGGTGGACTTTTGGATGATTCTACCGGAGCCATAGGGAGAGCTCCAATCAGCCTCTGGCAAGGAGTGAGAGATGGCCTGTGCTCCTCTGCTGACCTGAGACCAGTTCTCTATGGAATAAACTCAACGTCTGGGTGTCTGATGCCTGTCAGTTTGCTTAATCTCGCCGAGTGCAGCCAGCTCAGAGAAACTGTCCGCTCCACTTTGGCTGCTTTAGTCCCTGCGACATTGGTTTCCAGATCAGGAAAGCCAGATTTCTCCACACTGACTAACTGGACCCGAATCACTACTGTAGTACAGAACTCTAATCAGACAGCGGGAGCCTCTGGGGGTGTGTGCTCTGGCATTCCGGCTCACCTACACATTCACATCAGAAGCGTCGTCATGGGAACCATAGGCGGAGTACCACAAAAAATGATCCAGGCTGTGGAGTTAAAtTTTAAGACATCTACATGGAGTTTACAGTGTGATGCAGCTGAGGGAACCATCTGTGTGACCCCAGACCTGACACAGACTTTCCCTGTGACCTCTTCTGTGACCTTTACCGAGAATCCCATCAGCACCCAATCCCCCATGTCCAGGTTTCGCATTAACTTCACAGAGTTTGACTGTGATAGGAATGATGTGTGCTGGCCTGAGCTTGCCTTCCCTCTCACACCTTATTACACAGGTGAGCCGTACTCTCAGGCTCTGGCTAAGGGACTCATCCTTGTCTTCTTCTTTATCGCCGCATCTGTCTTAGGAACACCGTGGAGACAAATCAGACAGGCATGGAGCAATAGCTcattctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagataaagtttatggaggggaaaaagaaaggattATTATGCAACTGATTCAGTATTGAGTCATACTGTAGTCATGAGGCTTTTTCTTAGGAAAGTAATTGCGCTATTTTTGATGAACTCCACCAGTGTCATTGTTTTGTATATGCTTTTCCTTTAGAAGCCACTGTAAGATAATGCatatttgttattaatatttattgtgCTATGTTGTACAGATTTTATTGTGGAATAAATTcatattgatttttta

Function

symbol description
tctn2 Acts upstream of or within determination of left/right symmetry. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 24 and Meckel syndrome 8. Orthologous to human TCTN2 (tectonic family member 2).

NR:

description
tectonic-2 isoform X2

GO: NA

KEGG:

id description
K19361 TCTN2; tectonic-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931112.2 True 2492 mRNA 0.49 18 14888382 14903274
XM_026931113.2 False 2489 mRNA 0.49 18 14888382 14903274

Neighbor

gene id symbol gene type direction distance location
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding downstream 2321 14866164 ~ 14886061 (-)
LOC113537027 cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 coding downstream 25810 14829205 ~ 14862572 (-)
ckap2l LOC108255521 coding downstream 62791 14807873 ~ 14825591 (-)
LOC113537164 NA coding downstream 83129 14802518 ~ 14805253 (-)
LOC113537011 H2AFV,LOC106584895,LOC107386217,LOC105007341,LOC107668744 coding downstream 110577 14773130 ~ 14777805 (-)
ccl19a.1 NA coding upstream 933 14904207 ~ 14906000 (-)
ydjc ydjc coding upstream 28539 14931813 ~ 14937772 (-)
ppil2 ppil2 coding upstream 195280 15098554 ~ 15141215 (-)
gal3st1a gal3st1,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding upstream 240911 15144185 ~ 15158018 (-)
pes pes1 coding upstream 258749 15162023 ~ 15177372 (-)
G355456 NA non-coding downstream 81030 14807051 ~ 14807352 (-)
G355434 purb,purba,LOC108425219 non-coding downstream 106859 14778820 ~ 14781523 (-)
G355413 NA non-coding downstream 142436 14731311 ~ 14745946 (-)
G355377 LOC108255875 non-coding downstream 181461 14629776 ~ 14706921 (-)
G355375 NA non-coding downstream 290936 14597153 ~ 14597446 (-)
G355724 NA non-coding upstream 44680 14947954 ~ 14949438 (-)
G355732 NA non-coding upstream 46261 14949535 ~ 15026316 (-)
G355725 NA non-coding upstream 49942 14953216 ~ 14954814 (-)
LOC117595933 NA non-coding upstream 66084 14969358 ~ 14971217 (-)
G355726 NA non-coding upstream 139031 15042305 ~ 15074193 (-)
mrpl41 mrpl41 other downstream 1163524 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4139544 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4371177 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4476696 10370162 ~ 10411686 (-)
LOC113536891 NA other downstream 5073966 9775966 ~ 9814416 (-)
ccl19a.2 NA other upstream 5522 14908796 ~ 14924659 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 677196 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 929779 15833053 ~ 15841684 (-)
G356331 NA other upstream 1236515 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1511415 16414689 ~ 16442957 (-)

Expression


Co-expression Network