otpb (otpb,otp,LOC108255424,LOC108423578,LOC107587559,LOC107720233,LOC107555478)


Basic Information

Item Value
gene id otpb
gene name otpb,otp,LOC108255424,LOC108423578,LOC107587559,LOC107720233,LOC107555478
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7799209 ~ 7802780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931164.2
AGCGCCTCCCTGTCTCTCTAAAGAACATTATAATGCTCGCGGCCACCTTTTTTTAAACGCGCGGagaatttttcttcatttggcCACTCTATGCTGTTTAAAGGAGTTAAAAGTTTTAGGGCTAGTTTCGGCAGCGGTGCGCGATGCTCTCTCACGCCGACCTCTTGGACACTCGCCTCGGTGAGTTACCGACATCCAACTCCGGTCTTCAGCTCCACTGGATGAAGGATGCGGCGGCTGAGCTGCTGGGCCACAGGGAGGCGTTGAAGTGCAGACTCGGCGCGGACAGCGGACACCCGGGCGACCTGAGCTCCGGACCGGACGCGGTCGAGGGCGCGACGCTGCTCCCCGGGGAAGAGATCAGCAATGGCGGATCAAACCCCAGCGGCATGCAGCAGGTCGGCGCCAAGGAGCAAgacaaacaacagcaacaacaaggTTCGAGTCAGTCGGGTGGACAGCAGAGTCAGCAGAAACAGAAACGACACCGGACCCGCTTCACACCGGCGCAGCTTAACGAGCTGGAGAGAAGCTTCGCAAAAACCCACTACCCTGATATCTTCATGAGAGAGGAACTGGCCCTAAGAATCGGATTAACAGAGTCCCGTGTTCAGGTGTGGTTTCAGAACCGTCGGGCCAAGTGGAAGAAGCGCAAGAAGACGACGAATGTGTTCCGCGCTCCTGGCACGCTGCTGCCCACACACAGCCTGCCGCAGTTTCCGACGGCCGCAATGGGCGACGGCTTGTGCTCGTTCCACGCCAACGACGGGCGCTGGGCCGCGGCGGGAATGGCAGGCGTTTCTCAGCTGCAGCTGCCGCCGTCGCTCGGCCGCCAGCCGGGCATGGCGCAGTCGCTGTCGCAGTGCAGCCTGGGAGGCGCGCCGCCGCCCAACTCCATGGGCCTTTCCAACGGTCTATCGTCGAACGGCTCGGGTCTGCAGTCGCACCTGTACCAGCCCGCGTTCCCCGGCATGGTGCCCGCCTCGCTCTCCGGCCCGACCAGCGCGAGCGGCTCGCCTCAGCTGTGCAGCTCCCCGGACAGTGACGTGTGGAGAGGCAGCAGCATCGCCTCCCTGCGCCGCAAAGCGCTCGAGCACACCGTCTCCATGAGCTTCACCTAATCACAGCATCGTTTGCGTcctcgttaaaaaaaaaaaaaaa
>XM_026931165.2
AGCGCCTCCCTGTCTCTCTAAAGAACATTATAATGCTCGCGGCCACCTTTTTTTAAACGCGCGGagaatttttcttcatttggcCACTCTATGCTGTTTAAAGGAGTTAAAAGTTTTAGGGCTAGTTTCGGCAGCGGTGCGCGATGCTCTCTCACGCCGACCTCTTGGACACTCGCCTCGGGATGAAGGATGCGGCGGCTGAGCTGCTGGGCCACAGGGAGGCGTTGAAGTGCAGACTCGGCGCGGACAGCGGACACCCGGGCGACCTGAGCTCCGGACCGGACGCGGTCGAGGGCGCGACGCTGCTCCCCGGGGAAGAGATCAGCAATGGCGGATCAAACCCCAGCGGCATGCAGCAGGTCGGCGCCAAGGAGCAAgacaaacaacagcaacaacaaggTTCGAGTCAGTCGGGTGGACAGCAGAGTCAGCAGAAACAGAAACGACACCGGACCCGCTTCACACCGGCGCAGCTTAACGAGCTGGAGAGAAGCTTCGCAAAAACCCACTACCCTGATATCTTCATGAGAGAGGAACTGGCCCTAAGAATCGGATTAACAGAGTCCCGTGTTCAGGTGTGGTTTCAGAACCGTCGGGCCAAGTGGAAGAAGCGCAAGAAGACGACGAATGTGTTCCGCGCTCCTGGCACGCTGCTGCCCACACACAGCCTGCCGCAGTTTCCGACGGCCGCAATGGGCGACGGCTTGTGCTCGTTCCACGCCAACGACGGGCGCTGGGCCGCGGCGGGAATGGCAGGCGTTTCTCAGCTGCAGCTGCCGCCGTCGCTCGGCCGCCAGCCGGGCATGGCGCAGTCGCTGTCGCAGTGCAGCCTGGGAGGCGCGCCGCCGCCCAACTCCATGGGCCTTTCCAACGGTCTATCGTCGAACGGCTCGGGTCTGCAGTCGCACCTGTACCAGCCCGCGTTCCCCGGCATGGTGCCCGCCTCGCTCTCCGGCCCGACCAGCGCGAGCGGCTCGCCTCAGCTGTGCAGCTCCCCGGACAGTGACGTGTGGAGAGGCAGCAGCATCGCCTCCCTGCGCCGCAAAGCGCTCGAGCACACCGTCTCCATGAGCTTCACCTAATCACAGCATCGTTTGCGTcctcgttaaaaaaaaaaaaaaa

Function

symbol description
otpb Predicted to enable DNA binding activity. Acts upstream of or within forebrain neuron development; hypothalamus development; and mammillary body development. Predicted to be located in nucleus. Is expressed in several structures, including brain; gonad; neural keel; neural plate; and neurons. Orthologous to human OTP (orthopedia homeobox).
otp Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in fibrillar center and nuclear body.

NR:

description
homeobox protein orthopedia B-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0021884 forebrain neuron development biological_process
GO:0007632 visual behavior biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K24901 OTP; homeobox protein orthopedia

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931164.2 True 1161 mRNA 0.61 3 7799209 7802780
XM_026931165.2 False 1122 mRNA 0.61 3 7799209 7802780

Neighbor

gene id symbol gene type direction distance location
entr1 sdccag3 coding downstream 171355 7621349 ~ 7627854 (-)
snapc4 NA coding downstream 178647 7607784 ~ 7620562 (-)
hmgcra hmgcr,hmgcra,LOC107699716,LOC107587518,LOC107720287 coding downstream 280796 7509917 ~ 7518413 (-)
ttc37 ttc37,LOC107735852 coding downstream 344711 7429317 ~ 7454498 (-)
zgc:194908 mctp1 coding downstream 386832 7410907 ~ 7412377 (-)
lhfpl2b lhfpl2,LOC108423653 coding upstream 49181 7851961 ~ 7863470 (-)
homer1b homer1b,LOC108255354,LOC108423652,LOC107720277,LOC107703256,LOC107555494,LOC107699726 coding upstream 69412 7872192 ~ 7896685 (-)
mtx3 mtx3,LOC107720223,LOC107703259,LOC107756305 coding upstream 122835 7925615 ~ 7934493 (-)
serinc5 serinc5,LOC107756307,LOC107555497,LOC107699732,LOC107703261 coding upstream 147818 7950598 ~ 7969991 (-)
cdk7 cdk7,LOC107703229,LOC107720222,LOC107699696 coding upstream 170168 7972948 ~ 7986326 (-)
G351517 NA non-coding downstream 17656 7780780 ~ 7781553 (-)
G351362 NA non-coding downstream 156941 7548586 ~ 7642268 (-)
G351384 NA non-coding downstream 163016 7635102 ~ 7636193 (-)
G351308 NA non-coding downstream 260868 7538038 ~ 7538341 (-)
G351266 NA non-coding downstream 332256 7466596 ~ 7466953 (-)
G351625 NA non-coding upstream 146420 7949200 ~ 7950503 (-)
G351687 LOC108255524 non-coding upstream 307406 8110186 ~ 8136037 (-)
G351702 NA non-coding upstream 395884 8198664 ~ 8198891 (-)
G351968 NA non-coding upstream 625492 8428272 ~ 8428551 (-)
G352006 NA non-coding upstream 732438 8535218 ~ 8535431 (-)
card9 card9 other downstream 191743 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 201247 7585472 ~ 7597962 (-)
G350867 NA other downstream 1024060 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1446837 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 1678250 6056981 ~ 6120959 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 750867 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 767737 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 838162 8640942 ~ 8654612 (-)
LOC113536894 ttc16 other upstream 1237847 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 1973186 9775966 ~ 9814416 (-)

Expression


Co-expression Network