rasa1a (rasa1,LOC108443998,LOC106580138)


Basic Information

Item Value
gene id rasa1a
gene name rasa1,LOC108443998,LOC106580138
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 9739011 ~ 9767469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931257.2
AGATCGTATCGATGCACGCGGCGCTCTGTTGAGCTGGTCTGCGCGCGGGGCGCACGGGCACGCGCAGGGAAAGGAGTGGGACTGGGAGCAGCTGTGGCAAATGTTCCAACACTGCACTCATCTcgaaagaaaggagaaagttTGGCAGAAGGAACGGCCATAACGCGTTCCCCGAGTggaaatgaagaaagagaggagtGTCGGATACTAGAAGGCAACTGCGGACCGTGTCAGAGAACAGCTCGGGGCCTTTTCTGGAACTCTTTGGAAACAAAATAACAGCCCAGAAAAAAGCCTggcgcacacactcacaataaAACCACACATTCCCGTCAAGTGGACTGCTAGCAAGAACTGGCGCTGCGGCAACACACCGACTGATTACTCAACTTATTCTGGCGTTTTTACTTTACGTTATTTCATATTCGTCTCATTTTCCCCGTCTAAACTCGAAACTCAGGAAACAATGAAGACATAACTCATCCAGTGTACCGTCAGCTAGctttggctagctagctagctatcgtGTGTGGACTAGCCagcgctagctagctaacggGAGGCGTGCGGTGTTTACCGAGAAAGTTTTGGGCGACGCTTTAGAGATTAGAGGAGCGTTTTGAATAAAGGAAGAAGGAGCAGGCTCTCCTCTTGTGTCGCATTTTAATGGACGCCGAGGTGCAGAACGAAGGCAGGAGCACAGTGGCATCGGACGGTCGAGGCCCCGAATCGACCCAGTTTCCGTTTTATGCCAAACCGACTCGAGTGCGGGTGAGTGAGCTGTGCCAAGCCGCTGCGCAGAGCTACCGGCCACCGTCCGCCCCGTCCCCTGACGGCCTGAGCAGCGCGATGATCTACCCTGTTGCCGGAGAAGAGCTCACTCGAGCCGGGTCAAGCTCAGGACCAGGCGGAGGCTGCTGTTCCCCGGGCTCAGAGGGACCCGAGAGCCGCACGTCTCCCAGCTCGGCGGCTCCGGACGGGCCTTCAGGCTTCCCGCCgctgccgccgccgccgccgttTTTTCCCGGTTCCGGAGTTCACGGCAGCGTGGACGAGAGCGACCAACAGGACGGAGCGGAGTACGAGGAAGAGGAGGCTGTGTTTTCCCTCTCCGCACCACCCACTAACCAATGGTACCATGGGAAGCTGGACCGGACCATTGCAGAGGAGCGGCTGCGCAAGGCCAGGACACCGGGCAGCTACCTGATCAGGGAGAGCGACCGGAGGCCCGGCTCCTTCGTGCTCTCCTTCCTCAGCAAGACCAGTGTGGTCAACCACTTCAGGATCATTGCCATGTGTGGGGATTATTACATTGGTGGGAGACGGTTCTCATCCCTCTCAGACCTCATTGGTTATTACAGCTATGTGTCTTGCCTACTGAAAGGTGAAAAGCTGCTATCACCAGTGGCTCCACCAGAGCCTGTGGAGGACAGGAGAAGAGTGAGAGCCATCCTTCCATACACCAAAGTGCCAGATACAGATGAGATCAGtTTCCTCAAAGGAGACATGTTTATTGTTCACAATGAACATGAAGATGGCTGGATGTGGGTGACCAATGTCAGAACGGAGGAACAGGGCCTTATAGTGGATGATctggtggaggaggtgGGACGAGAAGAGGATCCCCATGAGGGCAAAATCTGGTACCATGGGAAAATCAGCAAACAAGAGGCATACAATCTGTTGATGACAGCAGGCCAGGTGTGCAGCTTTCTGGTGCGGCCGTCGGACAGCACACCGGGAGACTACTCACTTTTCTTCCGCACTAATGAGAACATCCAAAGGTTCAAGATCTGCCCCACCCCCAATAACCAGTACATGATGGGTGGCAGGTATTACAACAGTGTTGATGATATCATCGAACATTACAGAAAAGAACAGATTGTAGAAGGCTATAACCTGAAAGATCCAGTCTCAAATCAGcaacaagAACAAGTACTCTGTAATGCCGTCGACGAGAATCGAGAAATTTACAAAACTATTCGGCGAAAAACGAAAGATGCGTTCTACAAAAACATTGTCAAGAAAGGATACCTCCTGATTAACAAAGGCAAAGGAAAACGCTGGAAGAATCTGTACTTCATCCTGGAGGGCAACGATGCTCAACTTATCTACTTTGAGAGCGAGAAGCGAGCCACCAAACCCAAAGGGCTGATCGACCTCAGTGTGTCCTCAGTGTACTGTGTGCACGACAGTCTGTTTGGCAGGCCAAACTGTTTCCAGATTGTGATTCAGCACTTTAGTGAAGAGCAGTGCATTTTCTACTTTGCGGGAGACACACCTGAGCAGGCCCAGGACTGGATGAAATGCCTACAAACCTTCTGCAGTAACTTAAGGAAGCCTGCACAGGCCACTTCCAACAAGCGTCTACGTCAGGTGAGCAGCTTAGTGCTTTATGTGGAAGAGGCCCACAAACTTCCCATCAAACATTTCACGAACCCATACTGCAACATCTACTTGAACAGCGTCCATGTAGCCAGGACTCACCCGAGAGATGGCCAGAACCCAGTCTTCACAGAAGAGTTCATCTTTGAtGACTTATCCAGTGAAATCAACCGATTTGAAATCAGCCTAAGCAACAAAACTAAGAAGAGCAAAGAAAGTGATATTTTGTTCATGCGTTGCCTTCTGAGCCGGTTGCAGAGGGGCCAGATGATAGACGAGTGGTTCCCATTGAGCTCTCACGTGCCTCTGAAGGGAATTGAGCCGGGCTCCTTGCGTGTGCGAGCACGCTATTCCATGGAGAAAATCATGCCAGAGGAGGAGTACAACGAATTCAAAGAAGTCATTCTACAAAGAGATTTCCATGTGATCTATGCACTGGCTCATGTATGTGGGCAGGACCGCACTCTACTGGCCAGCATCCTGCTCAGGATCTTCAGACACGAGAAAGCTGAGGCTCCACTACTCAGGACTCTCAATGACAGAGAGATTAACATGGAAGATGAAGCCACCACTCTGTTCCGTGCCACCACCCTGGCCAGCACACTGATGGAGCAGTACATGAAGGCTACAGCCACGCCCTTCGTCCATCACGCCCTCAAAGACACCATTCTTAAGATTATGGAGAGCAAGCAGTCCTGCGAGCTAAACCCATCTAAACTGGAGAAGAATGAGGATGTAAATCTGAACCTGACCAACCTGCTCACCATCCTGTCTGAGCTGGTTGAGAAGATCTTCATGGCTGCTGAGATCTTGCCTCCAACTTTGAGGTTTATATACGGGTGCCTGCAGAAGTCCGTGCAGCAGAAATGGCCCACTAACACTACAATGCGGACCAGAGTTGTGAGtgGTTTTGTCTTCCTGCGATTGATCTGCCCTGCCATTCTCAACCCCAGGATGTTCAACATCATCTCTGATCCTCCTTCTCCGACGGCAGCCAGAACACTCACACTTGTGGCCAAGTCAGTACAGAACCTGGCCAATCTGGTGGAGTTTGGGGCCAAGGAGCCCTACATGGAAGGAGTGAATCCATTCATAAAGAATAACAAACAACGCATGATCATGTTTCTGGATGAGTTGGGGAATGTCCCTGACTTGCCTGATGCTCCAGAGCACTTTAGGACTGATCTGTCCCGAGACCTTGCTGCCCTGCATGAGATCTGTGCTGCTCACTCAGATGAACTCCGCACCTTGAGCAACGAGAGAGGAGCACAGCAGCACGTGCTGAAAAAGCTGCTGGCCATCACAGAGCTCCTCCAGCAGAAACAGGTGCACTACGCCATGTCCAACAGCAACAGGTAGTTCCATTTCccgctctctgtctgtcactccaTCTGTCTCCGTCTTCATGGAGTAGCCAGTGGGATCCCAGCATGCTCCACCttcatcaccatggcaacctCTATCCCTGACTATTTAGCCACTTCCCCTTCCCTTCCTTTTCCACCATGCCAAGATAACTATGCAACTACAGCAGTGAAACAAAAAGCCTGGGGCCTGAGTCCCACACTGACAACTTTTAAGCTATTCCCACAGCAACTTCAAGTTTGACTGTGCCCCATAATATGggtacttttttgtttttgctttttcttcaaCCTAAATGGGTCCCAGTAGTGACCCATAAAGCTCATTGTACCATTGAACAGCCATTGCCAAAGCGTTTGTTTGTCTGCTTGATAAGAAAACTCAACTGACACAAGGCTGCAGCGATATCTATAACTGGATTATGAGCTATAATGctttttatactgtaatttgTTACTGATTTACAAGgtcatgaatatgcaaaattGTGCTCAAActagtgttctttttttccatttacttaTGATTGTGGTGTAGACAGGATTTTTAAAGAGAGtatgattattttatatcagAACAATAAATTCTCTTGCTGGAATCATGAGTATATAATTTGAGTTATCTCCCCTGCTtctatttgttatattttttgaTTTGGTCCACTCTTCCCTGAGATTAATCCTAAGCCAGACTTGTCCTCAGGGGAAGGAGAAATGAGATGTTTACAGCAGTAAAATTTACATTAGTACAGACTGTATAAGGAATGCATGCACttattaaaactttataaaGTACTGACTGA
>XM_034298909.1
AGATCGTATCGATGCACGCGGCGCTCTGTTGAGCTGGTCTGCGCGCGGGGCGCACGGGCACGCGCAGGGAAAGGAGTGGGACTGGGAGCAGCTGTGGCAAATGTTCCAACACTGCACTCATCTcgaaagaaaggagaaagttTGGCAGAAGGAACGGCCATAACGCGTTCCCCGAGTggaaatgaagaaagagaggagtGTCGGATACTAGAAGGCAACTGCGGACCGTGTCAGAGAACAGCTCGGGGCCTTTTCTGGAACTCTTTGGAAACAAAATAACAGCCCAGAAAAAAGCCTggcgcacacactcacaataaAACCACACATTCCCGTCAAGTGGACTGCTAGCAAGAACTGGCGCTGCGGCAACACACCGACTGATTACTCAACTTATTCTGGCGTTTTTACTTTACGTTATTTCATATTCGTCTCATTTTCCCCGTCTAAACTCGAAACTCAGGAAACAATGAAGACATAACTCATCCAGTGTACCGTCAGCTAGctttggctagctagctagctatcgtGTGTGGACTAGCCagcgctagctagctaacggGAGGCGTGCGGTGTTTACCGAGAAAGTTTTGGGCGACGCTTTAGAGATTAGAGGAGCGTTTTGAATAAAGGAAGAAGGAGCAGGCTCTCCTCTTGTGTCGCATTTTAATGGACGCCGAGGTGCAGAACGAAGGCAGGAGCACAGTGGCATCGGACGGTCGAGGCCCCGAATCGACCCAGTTTCCGTTTTATGCCAAACCGACTCGAGTGCGGGTGAGTGAGCTGTGCCAAGCCGCTGCGCAGAGCTACCGGCCACCGTCCGCCCCGTCCCCTGACGGCCTGAGCAGCGCGATGATCTACCCTGTTGCCGGAGAAGAGCTCACTCGAGCCGGGTCAAGCTCAGGACCAGGCGGAGGCTGCTGTTCCCCGGGCTCAGAGGGACCCGAGAGCCGCACGTCTCCCAGCTCGGCGGCTCCGGACGGGCCTTCAGGCTTCCCGCCgctgccgccgccgccgccgttTTTTCCCGGTTCCGGAGTTCACGGCAGCGTGGACGAGAGCGACCAACAGGACGGAGCGGAGTACGAGGAAGAGGAGGCTGTGTTTTCCCTCTCCGCACCACCCACTAACCAATGGTACCATGGGAAGCTGGACCGGACCATTGCAGAGGAGCGGCTGCGCAAGGCCAGGACACCGGGCAGCTACCTGATCAGGGAGAGCGACCGGAGGCCCGGCTCCTTCGTGCTCTCCTTCCTCAGCAAGACCAGTGTGGTCAACCACTTCAGGATCATTGCCATGTGTGGGGATTATTACATTGGTGGGAGACGGTTCTCATCCCTCTCAGACCTCATTGGTTATTACAGCTATGTGTCTTGCCTACTGAAAGGTGAAAAGCTGCTATCACCAGTGGCTCCACCAGAGCCTGTGGAGGACAGGAGAAGAGTGAGAGCCATCCTTCCATACACCAAAGTGCCAGATACAGATGAGATCAGtTTCCTCAAAGGAGACATGTTTATTGTTCACAATGAACATGAAGATGGCTGGATGTGGGTGACCAATGTCAGAACGGAGGAACAGGGCCTTATAGTGGATGATctggtggaggaggtgGGACGAGAAGAGGATCCCCATGAGGGCAAAATCTGGTACCATGGGAAAATCAGCAAACAAGAGGCATACAATCTGTTGATGACAGGCCAGGTGTGCAGCTTTCTGGTGCGGCCGTCGGACAGCACACCGGGAGACTACTCACTTTTCTTCCGCACTAATGAGAACATCCAAAGGTTCAAGATCTGCCCCACCCCCAATAACCAGTACATGATGGGTGGCAGGTATTACAACAGTGTTGATGATATCATCGAACATTACAGAAAAGAACAGATTGTAGAAGGCTATAACCTGAAAGATCCAGTCTCAAATCAGcaacaagAACAAGTACTCTGTAATGCCGTCGACGAGAATCGAGAAATTTACAAAACTATTCGGCGAAAAACGAAAGATGCGTTCTACAAAAACATTGTCAAGAAAGGATACCTCCTGATTAACAAAGGCAAAGGAAAACGCTGGAAGAATCTGTACTTCATCCTGGAGGGCAACGATGCTCAACTTATCTACTTTGAGAGCGAGAAGCGAGCCACCAAACCCAAAGGGCTGATCGACCTCAGTGTGTCCTCAGTGTACTGTGTGCACGACAGTCTGTTTGGCAGGCCAAACTGTTTCCAGATTGTGATTCAGCACTTTAGTGAAGAGCAGTGCATTTTCTACTTTGCGGGAGACACACCTGAGCAGGCCCAGGACTGGATGAAATGCCTACAAACCTTCTGCAGTAACTTAAGGAAGCCTGCACAGGCCACTTCCAACAAGCGTCTACGTCAGGTGAGCAGCTTAGTGCTTTATGTGGAAGAGGCCCACAAACTTCCCATCAAACATTTCACGAACCCATACTGCAACATCTACTTGAACAGCGTCCATGTAGCCAGGACTCACCCGAGAGATGGCCAGAACCCAGTCTTCACAGAAGAGTTCATCTTTGAtGACTTATCCAGTGAAATCAACCGATTTGAAATCAGCCTAAGCAACAAAACTAAGAAGAGCAAAGAAAGTGATATTTTGTTCATGCGTTGCCTTCTGAGCCGGTTGCAGAGGGGCCAGATGATAGACGAGTGGTTCCCATTGAGCTCTCACGTGCCTCTGAAGGGAATTGAGCCGGGCTCCTTGCGTGTGCGAGCACGCTATTCCATGGAGAAAATCATGCCAGAGGAGGAGTACAACGAATTCAAAGAAGTCATTCTACAAAGAGATTTCCATGTGATCTATGCACTGGCTCATGTATGTGGGCAGGACCGCACTCTACTGGCCAGCATCCTGCTCAGGATCTTCAGACACGAGAAAGCTGAGGCTCCACTACTCAGGACTCTCAATGACAGAGAGATTAACATGGAAGATGAAGCCACCACTCTGTTCCGTGCCACCACCCTGGCCAGCACACTGATGGAGCAGTACATGAAGGCTACAGCCACGCCCTTCGTCCATCACGCCCTCAAAGACACCATTCTTAAGATTATGGAGAGCAAGCAGTCCTGCGAGCTAAACCCATCTAAACTGGAGAAGAATGAGGATGTAAATCTGAACCTGACCAACCTGCTCACCATCCTGTCTGAGCTGGTTGAGAAGATCTTCATGGCTGCTGAGATCTTGCCTCCAACTTTGAGGTTTATATACGGGTGCCTGCAGAAGTCCGTGCAGCAGAAATGGCCCACTAACACTACAATGCGGACCAGAGTTGTGAGtgGTTTTGTCTTCCTGCGATTGATCTGCCCTGCCATTCTCAACCCCAGGATGTTCAACATCATCTCTGATCCTCCTTCTCCGACGGCAGCCAGAACACTCACACTTGTGGCCAAGTCAGTACAGAACCTGGCCAATCTGGTGGAGTTTGGGGCCAAGGAGCCCTACATGGAAGGAGTGAATCCATTCATAAAGAATAACAAACAACGCATGATCATGTTTCTGGATGAGTTGGGGAATGTCCCTGACTTGCCTGATGCTCCAGAGCACTTTAGGACTGATCTGTCCCGAGACCTTGCTGCCCTGCATGAGATCTGTGCTGCTCACTCAGATGAACTCCGCACCTTGAGCAACGAGAGAGGAGCACAGCAGCACGTGCTGAAAAAGCTGCTGGCCATCACAGAGCTCCTCCAGCAGAAACAGGTGCACTACGCCATGTCCAACAGCAACAGGTAGTTCCATTTCccgctctctgtctgtcactccaTCTGTCTCCGTCTTCATGGAGTAGCCAGTGGGATCCCAGCATGCTCCACCttcatcaccatggcaacctCTATCCCTGACTATTTAGCCACTTCCCCTTCCCTTCCTTTTCCACCATGCCAAGATAACTATGCAACTACAGCAGTGAAACAAAAAGCCTGGGGCCTGAGTCCCACACTGACAACTTTTAAGCTATTCCCACAGCAACTTCAAGTTTGACTGTGCCCCATAATATGggtacttttttgtttttgctttttcttcaaCCTAAATGGGTCCCAGTAGTGACCCATAAAGCTCATTGTACCATTGAACAGCCATTGCCAAAGCGTTTGTTTGTCTGCTTGATAAGAAAACTCAACTGACACAAGGCTGCAGCGATATCTATAACTGGATTATGAGCTATAATGctttttatactgtaatttgTTACTGATTTACAAGgtcatgaatatgcaaaattGTGCTCAAActagtgttctttttttccatttacttaTGATTGTGGTGTAGACAGGATTTTTAAAGAGAGtatgattattttatatcagAACAATAAATTCTCTTGCTGGAATCATGAGTATATAATTTGAGTTATCTCCCCTGCTtctatttgttatattttttgaTTTGGTCCACTCTTCCCTGAGATTAATCCTAAGCCAGACTTGTCCTCAGGGGAAGGAGAAATGAGATGTTTACAGCAGTAAAATTTACATTAGTACAGACTGTATAAGGAATGCATGCACttattaaaactttataaaGTACTGACTGA

Function

symbol description
rasa1 Enables several functions, including GTPase activator activity; GTPase binding activity; and phosphotyrosine residue binding activity. Involved in several processes, including blood vessel morphogenesis; negative regulation of cell-matrix adhesion; and regulation of actin filament polymerization. Predicted to be located in cytosol. Implicated in arteriovenous malformation and basal cell carcinoma.

NR:

description
PREDICTED: ras GTPase-activating protein 1

GO: NA

KEGG:

id description
K04352 RASA1, RASGAP; Ras GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931257.2 True 4552 mRNA 0.50 25 9739011 9767469
XM_034298909.1 False 4549 mRNA 0.50 25 9739011 9767469

Neighbor

gene id symbol gene type direction distance location
LOC113536918 LOC108255830 coding downstream 10562 9726395 ~ 9728449 (-)
polr3g polr3g,LOC107557435 coding downstream 366392 9369976 ~ 9372619 (-)
adgrv1 adgrv1 coding downstream 378130 9229961 ~ 9360881 (-)
pmpca pmpca coding downstream 562549 9169861 ~ 9176462 (-)
coq2 coq2 coding downstream 584322 9148049 ~ 9154689 (-)
vcana vcan coding upstream 470167 10237636 ~ 10269049 (-)
zgc:110626 LOC108255345 coding upstream 565957 10333426 ~ 10339194 (-)
f2r f2r coding upstream 599926 10367395 ~ 10369658 (-)
sv2ca sv2c,LOC107755746,LOC107748435,LOC107565680 coding upstream 651057 10418526 ~ 10449587 (-)
ankdd1b ankdd1b coding upstream 695143 10462612 ~ 10470825 (-)
G352610 NA non-coding downstream 57213 9681029 ~ 9681798 (-)
LOC117595977 NA non-coding downstream 132037 9603400 ~ 9606974 (-)
G352512 NA non-coding downstream 406040 9332766 ~ 9332971 (-)
G352487 NA non-coding downstream 528481 9206428 ~ 9210530 (-)
G352498 LOC108255998 non-coding downstream 538323 9196783 ~ 9200688 (-)
G352869 NA non-coding upstream 381788 10149257 ~ 10225339 (-)
G352878 NA non-coding upstream 469415 10236884 ~ 10237277 (-)
G352881 NA non-coding upstream 541816 10309285 ~ 10309632 (-)
G352883 NA non-coding upstream 545118 10312587 ~ 10313356 (-)
G353075 NA non-coding upstream 664558 10432027 ~ 10588716 (-)
LOC113536894 ttc16 other downstream 689603 9040627 ~ 9049408 (-)
sh2d3cb sh2d3c other downstream 1084399 8640942 ~ 8654612 (-)
malt1 malt1 other downstream 1153000 8570517 ~ 8586011 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other downstream 1182335 8553647 ~ 8556676 (-)
card9 card9 other downstream 2131545 7602907 ~ 7607466 (-)
LOC113536891 NA other upstream 8497 9775966 ~ 9814416 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 602693 10370162 ~ 10411686 (-)
LOC113536921 LOC108255872 other upstream 741602 10509071 ~ 10517205 (-)
LOC113536823 NA other upstream 964058 10731527 ~ 10748838 (-)
mrpl41 mrpl41 other upstream 3954636 13722105 ~ 13724858 (-)

Expression


Co-expression Network