f2r (f2r)


Basic Information

Item Value
gene id f2r
gene name f2r
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 10367395 ~ 10369658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931283.2
aaaacagcagaaggaGGGAACTTGTGCCGCTGCTCCGTTACTCCAGCAATAACACAAGCACCAATCTCTGAAGGCTCCTGAAGCACTGAGCGTTCAAACGGGAATTACTGTTTATCATCGAGCCGTTTATCCGCGCTGTGGATTTTAATAACTCTGTAAAAGTGTGGCATTTGGACATTATGGTGCGGTACTTTATTCTAGCGGCTCTTCTGCCTCTACTCGCTACAGCAGCCCTGATACCAAACAGCGGTAACTCGAGCATCGTGCGGACGTTTTCTGGCTTTTTCCTGACGGTCACGGACGAGCCGTTTGACTATCTGGATGTGCTGGAGGGCAGCGGCTCAGGCTTCAGCCAAGAGCGCGAGAGAGAGCAGCGCCACCCTGCGGGAAAAAGGCACTATCACATCTCCAAAGAGGCCTCTCAGTTCCTCACGAGCCCTTTGGTGACCGTTTTCATCCCAACTGTCTACACgctcatcttcatcatcagtgTTCCTCTAAATGTGCTCGCCCTGGTCATGTTTATCCGCCGCGTGCACCCCAAGAAGCCGGCTGCGATCTACATGCTGAACTTGGCCTGCGCAGACTTGCTCTTCGTTTTGCTGTTGCCATTTCGCATCGCCTATCATTACAACGGAAACCACTGGATCTACGGCTCCGCCATGTGCCGCGTGGTCACTGCTGCCTTCTACTGCAACATGTACTGCTCTGTGCTGCTGATCACGTGCATCGCCGTGGACCGCTTCCTGGCCGTGGTCTACCCGATGGACTCGCTGATGTGGCGCAGCCCCAAAACCGCTTCGGCCGCGTGCGCCGCCATGTGGCTTCTCTCCATCGGTGGGGTCACGCCTCTGCTCGCGTCCGAACACACCGTGCACTTGGCCGAACTGGACATCACCACGTGTCACGACGTGATGGACATCGAACACCTCCGCGGCTACTACCTTTACTTTTTCCCCATCTTCTGCTCGCTGTTCTTCTTCATCCCGTTTATGTTCACCACAGTTTGTTACATTGGCATCATTCAAACGCTGTGCGCACTCGGCGGGGAAAACCGAGCCCGGAAGTCGCGCGCCGTTGCCATGGCAGCCACGGTGTTCGCCTTGTTCGCCGCGTGCTTCGCGCCCACCAACATCATCCTGCTGACACACTATGTCCGCTTCGCCCGCGCGCACGACGACGCTTCATACGCTGCTTACCTGGTGGCCACGTGTGTGGGAAGCCTGAGCTGCTGCCTAGATCCGCTCATATATTATTTCGGCTCGTCGCGCTGTCAGAAGCAGGTGCTGGCCTTCTTCAAGTGTCGCTCTGCACTGGCGCGCTCCCAGCTCAGCAGCACCAGTGGCAGCACCTCATCCAGCAAGCTGGAGACTTTCAAAAGCAACTTAAGCAGCCAGTACAGTAAGCTGGTTGCGTGAGCTCCACAAAAAAAGTATGACTCCACAAAAAAAGTACTTAATCAGGCTTGGGACTGATTTGCACTCATAGCAAATGTGCCCTATACTACCCATAAAGACTGCGTTCTTAAATACGTTGTTAAACCACTATCTTTACTGAGCAGATAAGCTTGTAAAAATAAGCTGTTTGCATCTATTTAGTTACCCCACCAAACTGGCCAAGAAATTCTGCATGAAACTGTTTACATCCCCTAAACATCCTCCCAACCAACCCTTAAGGGTTGTTTTGATGAAAAGGAAATATTTGAGGAAATATGTTGAATGGGGTATCTTAAGGTATCTTGAAAGGCATTTAAAATGACAGACTCCACTATTACAATTGTATTATGTAAACAAAATTTATTGTTACAGGAAATGTGCAAGAAAAACGTAATTGATAATTGAAACTGcaacaatatacacaataattGGAAAAGAACTTGGCCACTTTAGAAACCAGAAACATAAGCTTTCTATCAGTATTCCTTTCAATGGAATTATCAggggcaattaaaaaaaatacattgcatCTGTAGACAGCTGACTAGCACTGatgtctcctaaaaaaaaaagcaacaatcCCCACTGTTTTGTTCCTTT

Function

symbol description
f2r Enables thrombin-activated receptor activity. Acts upstream of or within circulatory system development; endothelial to hematopoietic transition; and negative regulation of hematopoietic stem cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; digestive system; hematopoietic system; mesoderm; and pleuroperitoneal region. Orthologous to human F2R (coagulation factor II thrombin receptor).

NR:

description
proteinase-activated receptor 1-like

GO:

id name namespace
GO:0070493 thrombin-activated receptor signaling pathway biological_process
GO:1902037 negative regulation of hematopoietic stem cell differentiation biological_process
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0098508 endothelial to hematopoietic transition biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function
GO:0015057 thrombin-activated receptor activity molecular_function

KEGG:

id description
K03914 F2R, PAR1; coagulation factor II (thrombin) receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931283.2 True 2036 mRNA 0.49 2 10367395 10369658

Neighbor

gene id symbol gene type direction distance location
zgc:110626 LOC108255345 coding downstream 28201 10333426 ~ 10339194 (-)
vcana vcan coding downstream 98346 10237636 ~ 10269049 (-)
rasa1a rasa1,LOC108443998,LOC106580138 coding downstream 599926 9739011 ~ 9767469 (-)
LOC113536918 LOC108255830 coding downstream 638946 9726395 ~ 9728449 (-)
polr3g polr3g,LOC107557435 coding downstream 994776 9369976 ~ 9372619 (-)
sv2ca sv2c,LOC107755746,LOC107748435,LOC107565680 coding upstream 48868 10418526 ~ 10449587 (-)
ankdd1b ankdd1b coding upstream 92954 10462612 ~ 10470825 (-)
polk polk,LOC107579148 coding upstream 101879 10471537 ~ 10479595 (-)
LOC113537161 c22h2orf81 coding upstream 149247 10518905 ~ 10521512 (-)
rtkn rtkn,si:dkey-40c11.1,LOC107746864,LOC107718341,LOC107676668 coding upstream 276409 10646067 ~ 10707487 (-)
G352883 NA non-coding downstream 54039 10312587 ~ 10313356 (-)
G352881 NA non-coding downstream 57763 10309285 ~ 10309632 (-)
G352878 NA non-coding downstream 130118 10236884 ~ 10237277 (-)
G352869 NA non-coding downstream 142056 10149257 ~ 10225339 (-)
G352610 NA non-coding downstream 685597 9681029 ~ 9681798 (-)
G353075 NA non-coding upstream 62369 10432027 ~ 10588716 (-)
G353070 NA non-coding upstream 213167 10582825 ~ 10586818 (-)
G353156 NA non-coding upstream 380208 10749866 ~ 10750755 (-)
G353171 NA non-coding upstream 423594 10793252 ~ 10794433 (-)
G353316 NA non-coding upstream 581794 10951452 ~ 10952329 (-)
LOC113536891 NA other downstream 552979 9775966 ~ 9814416 (-)
LOC113536894 ttc16 other downstream 1317987 9040627 ~ 9049408 (-)
sh2d3cb sh2d3c other downstream 1712783 8640942 ~ 8654612 (-)
malt1 malt1 other downstream 1781384 8570517 ~ 8586011 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other downstream 1810719 8553647 ~ 8556676 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 504 10370162 ~ 10411686 (-)
LOC113536921 LOC108255872 other upstream 139413 10509071 ~ 10517205 (-)
LOC113536823 NA other upstream 361869 10731527 ~ 10748838 (-)
mrpl41 mrpl41 other upstream 3352447 13722105 ~ 13724858 (-)
ccl19a.2 NA other upstream 4539138 14908796 ~ 14924659 (-)

Expression


Co-expression Network