LOC113537027 (cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749)


Basic Information

Item Value
gene id LOC113537027
gene name cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 14829205 ~ 14862572 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931301.2
AGCGTGAGCTCTCAGAGAGAGCGCATAACAAACATGGCGACAGGATGGTACGGAGGAAAGGGGATTACGCTGACTTTTATTCTGTTGCTGTGGCCCGGAGTGTGCGTGAGCGCGGCGGAAACGGCGGCCGAGGCCGGAAGCGAGAGCCGCGTCCTCGGCATGCGCTTGGAGAGAAGCGAAAAGCCCGCGACGACCACCGACGACGGGATCATCCAGGTGACGGAGGAGAGCATCATCTCGCTCAGGTTGTACGGGCTGCACATCAGCAATGACACCTTGTCGCACGTGAGGTTCATGGAGGTCGGGGACGACAGCGATGACTCTCAGAGCAGTGAGAGATTTAACAGGACTTGCTCTCATTTCACCAAAGACATCGTTATAAACGAAACCGGGACCATCAATAATCAGGGGAGCTCAGGGGTCCTGAAAGTAAAGATCAAGCTGTTGAGGAAAAGTGAGGCGCAGAGGGATTACGCGGTGTGCATCAGGAACGACCAGGACGCCAGGTGGTACGTGCTGGGAGACAATGATGGCAGGATACGTGTGGTGGAGGAGAAGAAGTCCCTGCTTCCCCTGTGGCTTCAGGTGATCCTGATCTGCTGCCTTCTGGTGCTGTCTGGCATGTTCAGTGGTCTCAACCTGGGTCTGATGGCTCTGGATCCCATGGAGCTGCGCATCGTCCAGAGCTGTGGCACGGACAAGGAGAAAAAGTATGCACGGAAGATCGAGCCCATCCGAAGGGAAGGTAACTACCTGTTGTGCTCGCTCCTTCTTGGGAACGTGTTGGTCAACACAACTCTCACCATCCTTCTGGACGATCTCATAGGTTCAGGCATTGGAGCTGTAATCGCTTCCACTATTGGCATTGTCATATTCGGTGAGATTGTTCCTCAAGCTTTGTGTTCACGCCATGGCCTGGCGGTCGGTGCCAACACCATCCTGCTCACCAAGTTCTTCATGCTGGTCACCTTCCCGCTCTCGTATCCCATCAGCAAACTCCTGGACTGCATTTTAGGTCAGGAGATCGGCACCGTGTACAACCGGGAGAAGCTTGTAGAGATGTTGAAGGTCACTGAGCCGTATAACGATCTGGTCAAAGAGGAGCTGAATATGATCCAGGGTGCTCTGGAGCTCAGGACCAAAACGGTCGAGGATGTCATGACGCCGCTTTCGAACTGTTTCATGATTCACAGTGATGCCGTGTTGGACTTCAACACCATGTCGGAGATCATGGAGAGCGGTTACACACGCATCCCTGTGTACGAGGAGGAGCGCACTAATATCGTGGACATCCTATTTGTGAAGGATTTGGCCTTTGTGGATCCAGACGACTGCACGACTCTGAAGACCATCACCAAGTTTTATAACCACCCCGTCCACTTTGTGTTCCACGACACCAAGCTGGATTCCATGCTGGAGGAATTTAAGAAAGgtaAGTCCCACTTGGCCATTGTCCAGAAGGTGAATAATGAAGGTGAAGGCGATCCTTTCTACGAGGTGCTGGGACTGGTGACTTTGGAGGATGTCATTGAAGAGATCATCAAATCAGAGATCCTGGATGAGTCTGACCTTTACACTGACAATCGGACCAGAAAAAAGGTGGCGCCCAATAAAAACAAGCGTGACTTCTCCGCCTTCAAGCATGAAAGTGAATCTAAAGTTAAAATCTCTCCTCAGCTACTATTGGCTGCCCACCGATTCCTTGCCACAGAAGTGAATTTATTCAGCCAATCTCAGATCTCCGAGAAGGTCCTGTTGAGGATCTTAAAACACCCTGATGTTATTCAGGAGATCAAATTCAACGAGAATGACAAACGATCACCTCATCATTATGTCTACCAGCGTGGCAAAGCTGTCGACTACTTCGTCCTCATACTGCAGGGTCGTGTGGAGGTGGAGGCTGGGAATGAGAATATGAAGTTTGAGACAGGGCCCTTCTCCTACTACGGTGTCATGGCACTTAATACCACATTAGagTTTCGTTCGCCGTCTCACATCAGCGGTCTAAACCGTTCAGCGTCTCTTAACTACACGGATCGCTCAGAGTCTCAGTCCATCAGTGGCAGCAGCACGCAGCTGAACAGCTCCCCCTCTGCGCAGTACATTCCTGACTTCAACGTGCGTGCACTGACGGACCTGCAGATCGTCAAGatcacTCGGTCACAGTATCAGAACGGTCTGATGGCATCTCGGTTGGACAATTCCCCCCAGTCTCCGGACAGCGGGCAGATGCGCATGGAGAACAGCACACCTGCAGTGTCTCAGTCTCCATCCGACAACACGCTCACACTCCCCATGACGGACACGCCACCAGACGAACACACATCACTCCTAAACGAGCAGAACTGTCTGTCTACTCGCCAGTccaatcacagcacacacagcgaGATCTGACGCCCATGCACAACTTTCTAACAGCATGCTTAGAGACTACCATCAAATACactattttatatacacacactctttccaGCCTGATTAATGAAACCGGCAGATGTCCGAATTACAGACACATACACccatataatatatttaacattttgctaTTCTTCGGTCATACAAATTTAAGCTGCCAAAATGAAGGGCATGAActggagggagaaaaaaaactgcgTGATTGCACTGAGAAGTTAAGTCTGGATGATAGAACGCCTGGACTGAGTAGTTTTTGAGCTAACAATCCATCTGGGCATTTTcaagactgattttttttttaaaaggaataatgtttatgtagaaaacaaatgttttattttctggttTTCAGTGGAAAAGTGTAGTTCATGGGGAAAGCAGCTGAATTCTATTTTGGCTGACATCAAATTTacacttaaattaaataaaaggtcAAGTAAGACCATAGATAGACTCCAGCGGTTTTCAGACTAATCTCTATCCATTGCACATgtagtagtgtatgtgtgatgagCACAGATAAGAATTTCGATGCAAGGAAAAACTAACCTGAAAAACTGGCAGTTGTTGGAATGTCAAGGAACAATTATATGAAACATTGTTTTTGTCAAGTGTACTTGTAAATTAAGCTGTAAATCTGAATAATTTATTGGTTTACAGTTGAGACTATGTTTTTGACATGGAAGAATGGGTTACGTGTCAAAAAATTAGTCTAACAACCCCCCTTAAACTTCCATATTTAAAGTCAGCAcattctctgattttttttttctttttcttttttttttttttagtatgggGAAATGTGTCACAATTCTTGTTTGTAGTAATCATTCCTACGCTGCAGATGTGGTAAGAAGAGATTAAGTTGAAAGCACTGAGCTGTTCATTTAAGGAAGTTGTGTGttcattttcagctgttttaaagAATCAACATCTTTAAACCTAATCGCACCAAAATCCAAGATGTATCTCAGGGAGACACTAAGCACCACATATATAATCTATATGTTAAACAATTCTCTGTTTTTCAGTATACAACTATAGAACAAGTGACCAAAAAAACTAAAGCATGTTGAAATTTCATCTCGTATCGAGTCCATATATTCGCCTACTGTAAGTGAACTTTCTAATGGTCTGTGGATTTCTGTTCGTGTTTAAGTGAATCACTGTCAAGTGAAACACTGTATACATGTCACCTTGAATCTAGTCGTCGTTTTGCAACAactccatatatatattttttttaacttcaaatcGAGCAAGCCTATATCGGAGAAGGTGGAATGCTTTCCTGATTCTGAGGAATTCAGTCTTGCATAAATGAGCTTTAAGACTTTGTGGTTCAATTATTGAACTTGAGGTTAACCcatcagaaatatatataaatatatacatactgtatttatttgacATATAAATTCAAGTTGTATATTTTCTtgtgaaatgtacattttgtctttttttttctaattgtgtTTTATGGTTCTTGCCTTCAGAACGTATATTTCAGATCAGCAGCATGTCTTGGTACTGAGTCATCTGTGTCACATTTCTGGTCCATTTAAAAGACAATCCGTAGTTGCATCCAAGCCAAAAAGatctttatttatagaaaattgGGTCAGTCCTGGAAATTATATTATAggtttttgatgatgatgtttttcttgttttgtcttTAGGTTCTGGTTCTTATTTTCCACTGTGaggattttattttgctttatacCAAATCTGGAATAACTCATCCTAAACAACCTGTATGCAGGGCAACAGTGTTAGCCAAATAAATATCAGAAAGCCTCTTCTTAATCTGTGACATCTGTTTATCAGAAAACAGAGAGCCGTTTTATTTTCACTGCTTCGTCTGTGGGTTTAGCTGTGATTGTAAGGTAGTGAAAGATGCTGCTAGATTTCCACGTTTGCGTTTTATCTGTTGTTTGATGTTTGTTCTCGCGAAGTTGAGATATGTCCGTAGGAATgatgatttattaaattagtTTCATAAATTGTGACTTTATTAAACTTCTAAATCCTCA

Function

symbol description
cnnm4 Predicted to enable magnesium ion transmembrane transporter activity and sodium ion transmembrane transporter activity. Involved in metal ion homeostasis. Part of protein-containing complex. Implicated in Jalili syndrome.

GO: NA

KEGG:

id description
K16302 CNNM; metal transporter CNNM

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931301.2 True 4457 mRNA 0.44 7 14829205 14862572

Neighbor

gene id symbol gene type direction distance location
ckap2l LOC108255521 coding downstream 3614 14807873 ~ 14825591 (-)
LOC113537164 NA coding downstream 23952 14802518 ~ 14805253 (-)
LOC113537011 H2AFV,LOC106584895,LOC107386217,LOC105007341,LOC107668744 coding downstream 51400 14773130 ~ 14777805 (-)
cfap77 cfap77 coding downstream 106507 14705927 ~ 14722698 (-)
barhl1a LOC108256006,LOC100049373 coding downstream 124128 14701210 ~ 14705077 (-)
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding upstream 3592 14866164 ~ 14886061 (-)
tctn2 tctn2 coding upstream 25810 14888382 ~ 14903274 (-)
ccl19a.1 NA coding upstream 41635 14904207 ~ 14906000 (-)
ydjc ydjc coding upstream 69241 14931813 ~ 14937772 (-)
ppil2 ppil2 coding upstream 235982 15098554 ~ 15141215 (-)
G355456 NA non-coding downstream 21853 14807051 ~ 14807352 (-)
G355434 purb,purba,LOC108425219 non-coding downstream 47682 14778820 ~ 14781523 (-)
G355413 NA non-coding downstream 83259 14731311 ~ 14745946 (-)
G355377 LOC108255875 non-coding downstream 122284 14629776 ~ 14706921 (-)
G355375 NA non-coding downstream 231759 14597153 ~ 14597446 (-)
G355724 NA non-coding upstream 85382 14947954 ~ 14949438 (-)
G355732 NA non-coding upstream 86963 14949535 ~ 15026316 (-)
G355725 NA non-coding upstream 90644 14953216 ~ 14954814 (-)
LOC117595933 NA non-coding upstream 106786 14969358 ~ 14971217 (-)
G355726 NA non-coding upstream 179733 15042305 ~ 15074193 (-)
mrpl41 mrpl41 other downstream 1104347 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4080367 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4312000 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4417519 10370162 ~ 10411686 (-)
LOC113536891 NA other downstream 5014789 9775966 ~ 9814416 (-)
ccl19a.2 NA other upstream 46224 14908796 ~ 14924659 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 717898 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 970481 15833053 ~ 15841684 (-)
G356331 NA other upstream 1277217 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1552117 16414689 ~ 16442957 (-)

Expression


Co-expression Network