zgc:110626 (LOC108255345)


Basic Information

Item Value
gene id zgc:110626
gene name LOC108255345
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 10333426 ~ 10339194 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931427.2
TAGTAGCGGAGTGACGTCATGATCACAGGAGGCTCACGCACTACACCTACTCACGAACTGTAATGAAGACTATGGCTTCTAACGTGAAGAACATATCAGTGGCATTTGATCCCTTAAATGAAAGCAACACATTTACTAATGGAGACTACATCTCTGGACGAGTAACTTTGGAGGTGGTGAAGAAAACTCACATCGAGAGTCTGTTTGTCAAAGCCAAAGGGAAAGCCTCTGTACTGTGGTCGGAAAATCACGGCAATAACAACGTAGTTGTTTATTACGATAAAGAAACATGCTTTAAGTCAGTTCAGTACTTCATTCAAGAACAGAAGAGAAAGGGTCAAGACGGATACTCACTGTTACCAGATGAGTCTGGGCCATATTACTCAAGAATTGTTGAACCTGGAATCCATGTTTACCCATTCTCCTTTCAGATCCCCCATCAAGACATGCCTGCATCTTTCAAAGGCTGCCATGGAAAGGTGGTTTACTTTTTAGAGGCCAAATTGTGCAGGTCAATGTCAATGCCAAAAAAAGCCAAAGTACATTTCAACTATGTTCCTCAGGGAGACATGTCTATACCGGACTTGATGATGTCTCAACATGGGTATAAAGAGAAGAAGATGAAATTCCTCACATCTGGGAGTGTGGCCATGGATGTACATACAGAGAAGATGGGTTTCCACTTAGGTGAGCAAATCAAGGTGAAGGTAGACGTTGTAAACAATTCCTCTCGTACAGTCAAACCTAAGATCAGCTTGTACCAGAAACAGAGCTTCTTTGcctcaaagaaaagaaaagtgagcACCAAAGAGCTCCTGAAAGAGAAAGGTGACCCCATTGATCCATCGACCAAGCAGTGTGTGACCAAGGTCTTGAACATTCCAGCAGATACCACTGTTTCCATCCTCAACTGCAAGGTTCTCAAAGTGGAGTACAGACTTAAGGTATATCTGGATATAAAATTTGCTTATGATCCAGAAATTAAACTGCCTGTGGTGATTCTTCCTGTCTGTGTGACCCAGAAAGACACAGATGTAGTAAATACAGATATGGGCATTGGCTTCGAATCCTGGACCAGCAAGCAGACTTGATTAACtcaaattttttcttttcagttagTTGATATTACATCTTAGCTTTGGAATGGTAGCTATGCTTTTTTATAttctattgttttgttttgttctttgtaTATAATTCTGTGATCACTATCTTAAACTCTGTTGACATTGTGGGTAactaatattaatttcttattacaCTTAATTTATGATTGGCTACTGTTTCCTTCCCttccttcacttcacttcatattcAGTTTAATGATCAAGCAAATATTGCATAAAAgatatttgtattaaatattatgatCCAGGAATTGAGGTGTGAGAACCCAGAGAACTccatctgctctctctctctttctctctgtctgttacaTGTTGTATCCCACAGTATTGCTCCT

Function

NR:

description
PREDICTED: arrestin domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931427.2 True 1465 mRNA 0.40 7 10333426 10339194

Neighbor

gene id symbol gene type direction distance location
vcana vcan coding downstream 64377 10237636 ~ 10269049 (-)
rasa1a rasa1,LOC108443998,LOC106580138 coding downstream 565957 9739011 ~ 9767469 (-)
LOC113536918 LOC108255830 coding downstream 604977 9726395 ~ 9728449 (-)
polr3g polr3g,LOC107557435 coding downstream 960807 9369976 ~ 9372619 (-)
adgrv1 adgrv1 coding downstream 972545 9229961 ~ 9360881 (-)
f2r f2r coding upstream 28201 10367395 ~ 10369658 (-)
sv2ca sv2c,LOC107755746,LOC107748435,LOC107565680 coding upstream 79332 10418526 ~ 10449587 (-)
ankdd1b ankdd1b coding upstream 123418 10462612 ~ 10470825 (-)
polk polk,LOC107579148 coding upstream 132343 10471537 ~ 10479595 (-)
LOC113537161 c22h2orf81 coding upstream 179711 10518905 ~ 10521512 (-)
G352883 NA non-coding downstream 20070 10312587 ~ 10313356 (-)
G352881 NA non-coding downstream 23794 10309285 ~ 10309632 (-)
G352878 NA non-coding downstream 96149 10236884 ~ 10237277 (-)
G352869 NA non-coding downstream 108087 10149257 ~ 10225339 (-)
G352610 NA non-coding downstream 651628 9681029 ~ 9681798 (-)
G353075 NA non-coding upstream 92833 10432027 ~ 10588716 (-)
G353070 NA non-coding upstream 243631 10582825 ~ 10586818 (-)
G353156 NA non-coding upstream 410672 10749866 ~ 10750755 (-)
G353171 NA non-coding upstream 454058 10793252 ~ 10794433 (-)
G353316 NA non-coding upstream 612258 10951452 ~ 10952329 (-)
LOC113536891 NA other downstream 519010 9775966 ~ 9814416 (-)
LOC113536894 ttc16 other downstream 1284018 9040627 ~ 9049408 (-)
sh2d3cb sh2d3c other downstream 1678814 8640942 ~ 8654612 (-)
malt1 malt1 other downstream 1747415 8570517 ~ 8586011 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other downstream 1776750 8553647 ~ 8556676 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 30968 10370162 ~ 10411686 (-)
LOC113536921 LOC108255872 other upstream 169877 10509071 ~ 10517205 (-)
LOC113536823 NA other upstream 392333 10731527 ~ 10748838 (-)
mrpl41 mrpl41 other upstream 3382911 13722105 ~ 13724858 (-)
ccl19a.2 NA other upstream 4569602 14908796 ~ 14924659 (-)

Expression


Co-expression Network