pes (pes1)


Basic Information

Item Value
gene id pes
gene name pes1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 15162023 ~ 15177372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931577.2
CTATTGACGTCACTGAGCGCACGTGTAGACGGAACCCTGTTGGCTGTGTTGGCTGGGGGTCTCGGTGTTTAGCTTTGTCGTATTTTGTTAAGTACAGAAGTGGGAtttttgtgtgtagtgtagtagctgagtgtgtgtgtgtgtgtgtataaaattctCCACAATGGGAGGTTTACAGAAAAAGAAGTATGAGAGCGGCTCAGCCACCAACTACATCAGCAGGAACAAAGCGCGTAAGAAGCTGAGCCTGAGTCTGGCTGATTTCAGACGATTGTGCATCTTGAAAGGAATTTACCCACATGAACCCAAACACAAGAAGAAGGTCAACAAGGGCTCCACGGCCCAGAGGACCTTCTACCTGCTCAAAGACATCCGCTTCCTCTTGCACGAGCCCGTCGTCGGCAAGTTCAGAGAGTACAAGATATTCGTGCGTAAACTGCGGAAGGCGTACGGAAAGGCAGAGTGGGGCTCCGTCGAGAGGCTGAAAGACAACAAACCCACATACAAACTGGACCACATTGTAAAGGAGAGGTATCCGACATTCATTGATGCTCTGCGGGACGTAGACGACGCTCTGTCCATGTGTTTCCTGTTCTCTACGTTCGCTCGCACCGGGAAGTGCCACGTGCAGGTGATCCAGCTGTGCCGCAGACTCAGTGTAGAATGGATGAACTACATCATCGCCTCGCGGTCGCTCAAAAAGGTGTTTCTATCCATCAAGGGCATCTATTACCAGGCAGAAGTGCTGGGCCAGACCATCACCTGGCTCGTACCATATCAGTTTGCTCATGATcaCCCTACAGATGTGGATTACAGAGTCATGGCCACTTTCACAGAGTTCTACACCACACTGCTTGGCTTTGTCAACTTCCGCCTCTACCAAACCCTCAACCTCATTTACCCACctaagcTTGATGGAAAAGGAGAGACAGATCTCAAAGCTGATTTTGAGGAGGACTATGCCATGGATTCGGAGAGCTACCTGGAGAAACTGTCAGCGCTGAGCGCCAGTCTGGCTCGTGTCGTCTCCACGGCTGAAGAAGAGGAAGCAGAGATGGACCATTTCCCCGCCGAAGGGGAGGACATGGAGAAGATGGAGGCGAGGGTAAAGGCGCAGCAGGAGGACGACAAACACAAGAAGCTCTTCGAGGGCCTCAAGTTCTTCCTGAACAGAGAAGTGCCGAGAGAATCTCTGGCTTTCCTGCTAAGGTGTTTCGGTGCACAGGTGTCCTGGGACAAATCTCTGTGTATCGGCAGCACGTATGACATCACCGACGAGACGATCACACACCACGTGGTGGACAGACCCAGCCTGGACAAACAGTACATCAACAGGTACTACATTCAGCCTCAGTGGGTGTACGACTGCGTGAACTCTAAGATGCTCCTTCCGGTGGAGGACTACTTCCTGGGCGTCACACTTCCTCCCCACCTGTCACCCTTCGTGGAGGAGAAGGAGGGCGATTACGTTCCTCCAGAGAGGCAGAAACTCCTGGCTCTGCAGAGAGGAGAGAAACCTGTCGCAGAGCAGGacgaggaagaagaggaggatgaagaggaagaagaagatgatgatgatgatgccgaagaagaggaggaggaggaggaagaggaggaggaagaagaggctGAACAAGAGGCTAAACTGAAAGATATGGAACAGAAAAGAACACAGGGCAAGGCCTTATCGGTGAAGGTGACCCCTGGAAAGGCGACTCCAGACAACAGGCAGAGACTGGATCAAGAAGAGAAGGCTGAGGAGAAGAGGCTCGCCatcatgatgatgaagaagaaggacAAATACCTCTACGATAAGATCATGTTCGGAAAGAAGAGGAAGGTTCGAGAGGCTAACAAAATGGCAGCCAAGAGAAAAGCTTTGGACGAGGCCAGCAAATCGGACAGAAAGAAGAAGTCGAAGAAACAGTAGAGGGGAAATGAGAAtggatgttatttttattattaaaaaaaattctatccATTTATTGGACACTGTCATGCCTactgtatgcaaaaaaaaaaatgtctcttcAATGTTATTTAGGTTTAATGATCACATTGTATTAAATTGATCagttttattcatgtattttaaatacCTCGTTAGTCATCCCATTGTATTAAAATGATCCATTTTAGCCAGTGGTGTAAAAAacacttttgctttttttttccattaagaTACAatgatctgttttattttatgtttaatacaAGAACAATATCTCAGGCTGGCATACACTCTCTCCAAAATCTATTAATCATAGGCGTCTGTGCGCTCATGTATGTGGGAGAAGGTAGGTAGAGCATTCCTCCGAGTGTGTGTCACTCTGCCTTGTGATTTAGCTTGAGCGACAGTTTGAAAAGTTTGGCTTCATATTGCCCAGTTGGTGGCTGTAGTATAGGTGGGGAATGGTGACCAagctggtgaaaaaaaataataaaatatttaaaaatcag
>XM_026931578.2
CTATTGACGTCACTGAGCGCACGTGTAGACGGAACCCTGTTGGCTGTGTTGGCTGGGGGTCTCGGTGTTTAGCTTTGTCGTATTTTGTTAAGTACAGAAGTGGGAtttttgtgtgtagtgtagtagctgagtgtgtgtgtgtgtgtgtataaaattctCCACAATGGGAGGTTTACAGAAAAAGAAGTATGAGAGCGGCTCAGCCACCAACTACATCAGCAGGAACAAAGCGCGTAAGAAGCTGAGCCTGAGTCTGGCTGATTTCAGACGATTGTGCATCTTGAAAGGAATTTACCCACATGAACCCAAACACAAGAAGAAGGTCAACAAGGGCTCCACGGCCCAGAGGACCTTCTACCTGCTCAAAGACATCCGCTTCCTCTTGCACGAGCCCGTCGTCGGCAAGTTCAGAGAGTACAAGATATTCGTGCGTAAACTGCGGAAGGCGTACGGAAAGGCAGAGTGGGGCTCCGTCGAGAGGCTGAAAGACAACAAACCCACATACAAACTGGACCACATTGTAAAGGAGAGGTATCCGACATTCATTGATGCTCTGCGGGACGTAGACGACGCTCTGTCCATGTGTTTCCTGTTCTCTACGTTCGCTCGCACCGGGAAGTGCCACGTGCAGGTGATCCAGCTGTGCCGCAGACTCAGTGTAGAATGGATGAACTACATCATCGCCTCGCGGTCGCTCAAAAAGGTGTTTCTATCCATCAAGGGCATCTATTACCAGGCAGAAGTGCTGGGCCAGACCATCACCTGGCTCGTACCATATCAGTTTGCTCATGATcaCCCTACAGATGTGGATTACAGAGTCATGGCCACTTTCACAGAGTTCTACACCACACTGCTTGGCTTTGTCAACTTCCGCCTCTACCAAACCCTCAACCTCATTTACCCACctaagcTTGATGGAAAAGGAGAGACAGATCTCAAAGCTGATTTTGAGGAGGACTATGCCATGGATTCGGAGAGCTACCTGGAGAAACTGTCAGCGCTGAGCGCCAGTCTGGCTCGTGTCGTCTCCACGGCTGAAGAAGAGGAAGCAGAGATGGACCATTTCCCCGCCGAAGGGGAGGACATGGAGAAGATGGAGGCGAGGGTAAAGGCGCAGCAGGAGGACGACAAACACAAGAAGCTCTTCGAGGGCCTCAAGTTCTTCCTGAACAGAGAAGTGCCGAGAGAATCTCTGGCTTTCCTGCTAAGGTGTTTCGGTGCACAGGTGTCCTGGGACAAATCTCTGTGTATCGGCAGCACGTATGACATCACCGACGAGACGATCACACACCACGTGGTGGACAGACCCAGCCTGGACAAACAGTACATCAACAGGTACTACATTCAGCCTCAGTGGGTGTACGACTGCGTGAACTCTAAGATGCTCCTTCCGGTGGAGGACTACTTCCTGGGCGTCACACTTCCTCCCCACCTGTCACCCTTCGTGGAGGAGAAGGAGGGCGATTACGTTCCTCCAGAGAGGCAGAAACTCCTGGCTCTGCAGAGAGGAGAGAAACCTGAGCAGGacgaggaagaagaggaggatgaagaggaagaagaagatgatgatgatgatgccgaagaagaggaggaggaggaggaagaggaggaggaagaagaggctGAACAAGAGGCTAAACTGAAAGATATGGAACAGAAAAGAACACAGGGCAAGGCCTTATCGGTGAAGGTGACCCCTGGAAAGGCGACTCCAGACAACAGGCAGAGACTGGATCAAGAAGAGAAGGCTGAGGAGAAGAGGCTCGCCatcatgatgatgaagaagaaggacAAATACCTCTACGATAAGATCATGTTCGGAAAGAAGAGGAAGGTTCGAGAGGCTAACAAAATGGCAGCCAAGAGAAAAGCTTTGGACGAGGCCAGCAAATCGGACAGAAAGAAGAAGTCGAAGAAACAGTAGAGGGGAAATGAGAAtggatgttatttttattattaaaaaaaattctatccATTTATTGGACACTGTCATGCCTactgtatgcaaaaaaaaaaatgtctcttcAATGTTATTTAGGTTTAATGATCACATTGTATTAAATTGATCagttttattcatgtattttaaatacCTCGTTAGTCATCCCATTGTATTAAAATGATCCATTTTAGCCAGTGGTGTAAAAAacacttttgctttttttttccattaagaTACAatgatctgttttattttatgtttaatacaAGAACAATATCTCAGGCTGGCATACACTCTCTCCAAAATCTATTAATCATAGGCGTCTGTGCGCTCATGTATGTGGGAGAAGGTAGGTAGAGCATTCCTCCGAGTGTGTGTCACTCTGCCTTGTGATTTAGCTTGAGCGACAGTTTGAAAAGTTTGGCTTCATATTGCCCAGTTGGTGGCTGTAGTATAGGTGGGGAATGGTGACCAagctggtgaaaaaaaataataaaatatttaaaaatcag

Function

symbol description
pes1 Enables RNA binding activity. Involved in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and regulation of cell cycle. Acts upstream of or within cell population proliferation and rRNA processing. Located in chromosome; cytosol; and nuclear lumen. Part of PeBoW complex and preribosome, large subunit precursor.

NR:

description
pescadillo homolog

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0043021 ribonucleoprotein complex binding molecular_function

KEGG:

id description
K14843 PES1, NOP7; pescadillo

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931577.2 True 2460 mRNA 0.47 15 15162023 15177372
XM_026931578.2 False 2454 mRNA 0.47 15 15162023 15177372

Neighbor

gene id symbol gene type direction distance location
gal3st1a gal3st1,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding downstream 4005 15144185 ~ 15158018 (-)
ppil2 ppil2 coding downstream 20808 15098554 ~ 15141215 (-)
ydjc ydjc coding downstream 224251 14931813 ~ 14937772 (-)
ccl19a.1 NA coding downstream 256023 14904207 ~ 14906000 (-)
tctn2 tctn2 coding downstream 258749 14888382 ~ 14903274 (-)
pole pole,LOC107668756 coding upstream 15286 15192658 ~ 15225173 (-)
si:dkey-98f17.5 si:dkey-98f17.5,LOC108255717,LOC108431725,LOC107755832,LOC107668759,LOC107599615,LOC106580116 coding upstream 113627 15290999 ~ 15311616 (-)
rfc5 rfc5,LOC107668751,LOC107716544,LOC107704514 coding upstream 160112 15337484 ~ 15345795 (-)
tesca tesc coding upstream 467222 15644594 ~ 15652663 (-)
fbxo21 fbxo21,LOC107726726,LOC102799747 coding upstream 479284 15656656 ~ 15668318 (-)
G355726 NA non-coding downstream 87830 15042305 ~ 15074193 (-)
G355728 NA non-coding downstream 106237 15049450 ~ 15055786 (-)
G355732 NA non-coding downstream 135707 14949535 ~ 15026316 (-)
LOC117595933 NA non-coding downstream 190806 14969358 ~ 14971217 (-)
G355725 NA non-coding downstream 207209 14953216 ~ 14954814 (-)
G355848 NA non-coding upstream 147115 15324487 ~ 15380675 (-)
G355916 NA non-coding upstream 342703 15520075 ~ 15523463 (-)
G356143 NA non-coding upstream 622177 15799549 ~ 15800119 (-)
G356142 NA non-coding upstream 624413 15801785 ~ 15801940 (-)
G356211 NA non-coding upstream 736493 15913865 ~ 15914335 (-)
ccl19a.2 NA other downstream 237364 14908796 ~ 14924659 (-)
mrpl41 mrpl41 other downstream 1437165 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4413185 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4644818 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4750337 10370162 ~ 10411686 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 403098 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 655681 15833053 ~ 15841684 (-)
G356331 NA other upstream 962417 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1237317 16414689 ~ 16442957 (-)
si:ch211-102c2.8 LOC108255971 other upstream 1287055 16464427 ~ 16478840 (-)

Expression


Co-expression Network