pole (pole,LOC107668756)


Basic Information

Item Value
gene id pole
gene name pole,LOC107668756
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 15192658 ~ 15225173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931595.2
TTGTAGTGTATAGTGGGCGGGGTTATACAGTCGGAAGTTGAGGAGGTGCTTGCAGAACGCGCCAAATTCTGTCTGCATGTTAGAGGCAGGGatgattaaaaacagaaacttAGCCATATATTAATGTTAGatgataaaataaacagattgcCCGAGCTACGTGTATGGATTCAGGTTATTAAATTAGAGTAAGGAAAGTAATAGAAGGAaagtaaatactgtataaacGCAAAGACAGTGCACTGGGTAGGTAAGCTAGGAAGAACGGCGGTTAGCTGGAAATCTGTAGCTATTATTggacaaaaaaacatcattagCAATAACATCCTGAGGAAATAACCGGCTTGTGTTGGAGAAAATCTGCAATGGTTTTACAGAACAGTGGGAGATATAAAGCAGACCGGGGTGGAGGAGCTGATCAGGACAAACAGCAGGATGACGTGTCCAGCTTGTCCGCCGTCAAGCGGCTTGAGCGCAGTCAGTTCACAGATGAAATGGACGCCCGCTACGGCTTCGAGCGCATGAAGGAGCCGGGAGAAAAAACCGGCTGGTTGATCAACATGCATCCGACGGAGATTCTGGATGATGATAAGCGGATGATCAGCGCAGTGGATTATTATTTCATTCAGGAGGATGGCAGCAGGTTTAAGGTCGCACTGCCATATAAGCCGTACTTCTACATAGCGACTaaaaagaacTGTGAGAGAGAAGTCATCTCCTTTTTATCAAAAAAGTTCCAAGGAAAGATCGCAAAGTTAGAGACCATCCCCAAGGAGGATCTCGACCTGcataacCACCTGGTGGGACTGAAGAGGAACTACATTAAACTGTCCTTTAACACAGTGGACGATCTCATCAAGGTGAAGCGGGAGATCATGCCTGCTGTgaggaagaacagagagagggagaaatcCAACGATGCCTACACTAGCATGCTGTCCAGcgcaCTTGTAGGTGGAAGCGTGACGACGGCCGACGAAGATGGCACGTCTAAGAAAATGGCCGACCAGCTGGACAACATTGTGGATATGAGGGAGTACGACGTGCCTTACCATGTTAGACTGTCCATCGACCTCAAGATCCACGTGGCTCACTGGTATAACGTGCGGTACAGAGGAAGTGCTTATCCTCCGGAGATCGTGCGTCGGGATGACCTTGTGGAAAGACCAgatcCTGTCGTCTTGGCGTTTGATATCGAGACCACCAAGCTCCCTCTGAAGTTCCCCGACGCAGAAACTGACCAGATCATGATGATCTCATACATGATTGATGGGCAGGGTTTCCTCATTACCAACAGAGAGATCGTCTCCGAGGACATCGAGGATTTTGAGTTCACGCCTAAGCCGGAGTACGAGGGCCCTTTCACTGTGTTTAACGAACCTGACGAGGCTGCTCTTATTCAGCGCTGGTTCGAGCACATCCATGAGACCAAACCCAACATTTTTGTCACCTATAACGGAGACTTCTTCGACTGGCCGTTTGTAGAGGCGCGCGCAGCTCACCACAACCTCAACATGTATCAGGAGATCGGTTTTCAGAAGGACAGCCAGGGCGAGTACAAGGCCAGCCAGTCTATTCACATGGACTGCCTCAGGTGGGTAAAGAGAGACAGTTACCTGCCTGTCGGAAGCCACAACCTGAAAGCAGCGGCGAAGGCCAAGCTGGGTTACGACCCTGTGGAGTTGGACCCTGAAGAGATGTGCCGCATGGCCACTGAGGAGCCGCAGACTTTGGCCACCTACTCAGTGTCAGATGCTGTGGCTACCTACTATCTCTACATGAAATATGTTCATCCCTTCATCTTCGCCCTGTGCACCATCATTCCCATGGAGCCTGACGAGgttttgCGTAAAGGTTCAGGTACACTGTGCGAGGCGTTGTTGATGGTGCAGGCTTTCCACGTCAACATCATTTTCCCGAACAAGCAGGAGCAGGTGTTCAATAAGCTCACAGACGACGGCCATGTCCTGGACTCGGAGACCTACGTGGGCGGCCATGTCGAGGCTCTGGAGTCTGGAGTATTCCGCAGTGACATCCCGTGCCGCTTCAAAATGAATCCGGCAGCATTCGACTTCCTGCTTCAGAGGGTGGAGCGGACTCTGCGGCATGCTGttgaagaagaggagaagatcCCGCTGGAGCAAGTCACAAACTTTAATGAGGTTTGTGATGACATCAAGAAGAAGCTGATCTCTTTGAAAGAAGTGCCTAACAGGATCGAGTGTCCTCTTATTTACCATCTCGACGTAGGGGCCATGTACCCCAACATCATCCTTACCAACAGATTGCAGCCGTCTGCCATGGTCGATGAGGCGACCTGTGCTGCATGCGATTTTAATAAACCTGGAGCTACCTGCCAGAGGAGGATGGCCTGGCAGTGGAGAGGAGAGATCATGCCAGCCAGTCGTAGTGAGTTCCACCGTATTCAGCAGCAGTTGGAGTCTGAGAAGTTCCCTCCTCTGTTTCCTAACGGAAAACCACGTGCCTTCCACGAGCTTAACAGAGAGGAACAGGCTCGGCACGAAAAGAAACGTCTGGGAGACTATTGTCGGAAGGCCTATAAGAAGGTGCACTTGACGAGGCTGGAAGAGAGAGTCACTACAATATGTCAGAGAGAGAATTCCTTCTACGTGGACACGGTTCGAGCTTTCCGAGATCGCCGCTATGAGTTTAAAGGACTGCATAAGGTGTGGAAGAAGAAGCTGTCTGCGGCTCAGGAGAGCGGCGATGCAGCAGAAGTGAAGCGCTGTAAAAATATGGAGATTCTTTATGATTCTCTGCAGCTTGCCCATAAATGCATCCTCAATTCCTTCTACGGATACGTCATGAGAAAAGGAGCGAGATGGTATTCCATGGAAATGGCCGGCATTGTGTGTCACACAGGAGCCAACATCATCACACAGGCCAGAGAGCTAATCGAACAAATTGGGAGGCCTTTAGAGCTGGACACTGATGGTATCTGGTGTGTCCTGCCTAACTCCTTCCCTGAGAACTTTGTCATCAAGTCCAGCAACGAGAAGAAGCCCAAAGTGACCATAAGTTACCCCGGGGCCATGCTGAACATCATGGTCAAGGAAGGCTTTACCAACGATCAGTACCAGGAGCTGGTGGACCCGGCCTCGCTCACGTACGAGACGAGGTCAGAGAACAGCATCttctttgaggtggatggaccGTACCTGGCCATGATCCTGCCTGCGTCTAAAGAGGAGGGCAAGAAGCTGAAGAAGAGATATGCTGTGTTTAACGAGGACGGCTCTCTGGCCGAGCTGAAGGGTTTCGAGgtaaagaggagaggagagctCCAGCTCATTAAGATCTTCCAGTCGTCCGTGTTCGAGGCTTTCCTCAAAGGCACCACTCTGGAGGAAGTCTACGCCTCGGTCGCCAAAGTGGCCGACTACTGGCTGGATGTGCTCTACAGCAAGgcaGCTAACATGCCAGACGCAGAGCTCTTCGAGTTGATTTCGGAAAATCGCTCCATGTCCCGGAAACTGGAAGACTACGGCGAGCAGAAGTCCACTTCCATCAGTACAGCCAAACGTCTGGCCGAGTTTCTCGGAGATCAGATGGTGAAGGATGCAGGTCTGAGCTGTCGCTACGTCATCTCTCGCAAACCTGAAGGCTCTCCTGTTACTGAGAGGGCGATTCCTCTGGCCATATTCCAGGCTGAAGCTAGCGTTAAGAAGCACTTCCTGCGCAAATGGCTGAAGATGCCCAGCCTCCATGACATGGACATCAGATCAATCCTGGACTGGGGTTACTACATTGAGAGATTGGGCAGTGCCATACAGAAGATCATCACCATTCCAGCAGCACTACAGCAGgtGAAAAACCCAGTGCCGCGAGTGCGCCATCCAGACTGGCTGCATAAGAAGCTTCTAGAAAAGAACGACATCTACAAACAGAAGAAAATCAGCGAGATGTTCACAAATGAAGGAAAGAGACAGGTGGCCAATCAGACAGAGCCAGGCAAGACTCCTGATATGGAGGATTTCGGGGCTCCACAGCGCCCCCTACAGCCTGCCATCCTCATTAGTACTAAGAGGAAGCGAGCGTCTCAGGGTGAGGACAGCCAGACTCAGGAGTCTCAGGAGCTGGAGCTCACACAGTCCTGGAGAGAGATACTGGGTCCTCCGCCACCTATGGGTACAACACAGGAGGAGAGGCTGGTGTGGCTGCGTTACCATAAGAAGAAGTGGGAGCTGCAGATCCGGCAGAGGAAAGAGCGCAGGAAGAGACGACGCATGCTTGATGGAGAGGCTCAGCCAACCGGAGGCGGCGTGATCAGGGACGGACCAACCACAGGACTAGGGAGCTTCCTCCGCAGGACAGCACGGAGCATTCTGGACATGCCCTGGCAAATAGTACAGATTGCAGAAACCAGTCAGCCAGGCCTGTATAAGCTGTGGGCGGTGATCGGCACTGACCTGCACTGCATGAAACTTAATATCCCACGAGTGTTTTATGTCAATCAAAGAGTGCCCAAGCAGGAAGAGGGAGCCACGTACAAAAAGGTGAACCGGATTTTGCCGCGCTCCAACGTGGTGTATTACCTGTACCAGTACTCTGTGCCTGAAGACATGTATCAGGAGCACATCAATGAGATCAATGCAGACCTTTCTGCCCCAGACATAGAGGGCGTCTACGAAACACAGGTGCCGCTGCTATTCCGGGCGCTGGTGCAGCTcggctgtgtgtgtatggtcaATAAGCAGGTGGTGAGGGCGCTGGCTGGCCGAGAGGCTGACACCTTCGAGCTGGAGCACCTGGAGATGAGATCGCTTGCTCAGTTCAGCTACCTGGAGCCAGGCAGCGTGAGACACATCTACCTGTACCATCACAGTCAGGGCCACAAGGCTCTTTTCGGCCTCTTCATCCCCTCTCAGCGCAAAGCCAGCGTCTTCGTCCTCGATACGGTTCGGAGTAACCAGATGCCGAACCTGAGTACGCTGTATGGAGCGGAGCGCACTGCGCTGTTAGAGAAGACCTCAGAGGAGCTGCTGCCTCCAGAGAAGCACCTGTTTGAAGTGCGTGCTGAGAACGACGTGAAGGCCATTTACCGCGCAGTGCAGCGCATTCTGCTCAGCTATAAGgaggagCGTCGTGGTCCCACTCTCATCGCTGTGCAGTCTAACTGGGAGCTGCGGCGTCTGGTGGCCGGCATGACCGTGCTGGAGGAGTTCCCCGTGGTTCCCGTGCACGTGACAGACGACATCAGCTACAGCGTGCTGGACTGGCAGCGGCACGGCGCACGCCGCATGATCAAACACTACTTAAACCTGGACAGCTGTCTTTCACAGGCCTTCGACATGGCCAGGTATTACCACTTGCCTGTAGGGAACCTGCCTGAGGACATCTCTATTTTTGGCTCGGACCTCTTTCTGGCACGTCACTTGCGGAAGCACAACCACCTGCTGTGGCTTTCACCCACAGCCAGACCCGACCTCGGGGGCAAGGAGGCCGACGACAGCCGCCTGGTGATGGAGAGCGACGAGCGGGGCTCCATGGAGATCAACGCTCCGGGATGCTTCTCCACAGtgtgtgtggagttggACATTCAGAGCTTGGCGGTGAACACCATCCTCCAGTCGCAGCACGTAAATGACATGGAGGGCGGGGCCAGCATGGGCGTGAGTTTTGATGTCATTCAGCACGCATCACTGGAAGACATGATGTCAGGAAACCAGGGAGCGACCGCTGTGGCTAGTTATGATGAGACTGCACTCTGCTCCAACacattcaggatCCTGAAGAGCATGGTGGTTGGCTGGGTGCGGGAGATCACACAGTACCATAACGTGTACGCAGATAATCAGGTGATGCACTTCTACCGCTGGCTGCGCTCCCCCAGCTCGCTCCTGTACGACCCGGCGCTGCACCGCACGCTGCTCAACATGATGAAGAAGATCTTCCTCCAGCTGGTTGCTGAGTTTAAGCGGCTCGGTTCCTCTGTGGTCTATGGGAACTTCAACCGCATCATCCTCAGTACCAAGAAACGGCGCATTGATGACGCCATCACCTACGTGGAGTACATCACCAACAGCATCCATTCACGGGAGATCTTCCACTCTCTGTCCATCACCTTCTCTCGATGCTGGGAGTTCCTGCTGTGGATGGATCCAGCTAACTACGGAGGAGTGAAAGGAAAAGTGCCCTCCAGCATCATGTACGGAGAGACTGGCAcagacaagaaaaagaaaggaaagcaggaaggagaggatgagggcagtgaggacgaggaggaggaggatgatgaacCAGAGGAAGAGCAAGATAGAGAGGAGGATGAGGTGGAGGACCTGATTGAGAGCAGCTGGAACATCATGCAGTACCTTCCTCAGGCTGCTTCCTGTCAGAAGTATTTCCTTATGATCATCTCAGCGTACATTGCCGCTGTGTATCACAGCATGAGGGAGGAGCTCAGACGAAATGCTCCTGGAGCCACGCCCATAAAGAGGCGGGGCGGAAGCCAAGCGTCCCAACAGCCTGCCGGTGACATCAGTGCACTTCCTGGCATGATCACGTTCTCTCAGGAGTACGTGTCGAGCGAGCTCACGCAGAACATCTTCACCATCACACAGAAGATCCAGAAAAAGGTGTGTGGGACACGCAGTGTGACTCAACCGTCTGAAATGTTCCCCGTGCTGCCAGGATCACATCTGCCCCTCAACAACCCCGCTCTGGAGTTCATCAAATACGTCTgtcagGTTCTCTCGCTGGACGCTAACATAGTGAACCAGGTGAATAAGCTGAAGCGGGATCTCCTGCGCTTGGTGAACGTTGGGGAGTTCTCCGAGGAGGCTCAGTTCCGTGACCCCTGCAACTCCTACGTCCTGCCAGAGGTCATCTGCCACCAGTGCAACTATTGCCGTGACCTTGACCTCTGCAAGGACCCTTCCATAGCCCAGGACGGCTCAGTCCTGCCGCAGTGGTTCTGCTCCAACTGCCAGGCGCAGTACGACACCGACTCCATCGAGATGGCTCTAGTGGAGGCTCTGCAGAAAAAGCTGATGAGTTACACTCTGCAGGACCTGGAGTGTGCTAAATGCAGAGGGGTGAAAGAAGCCAACATGCCTCTGTACTGCAGCTGCGCAGGAGACTTCAATCTCACCTTCAGCACAAAGAGCTTCACAGAGCAGGTCGATGTGTTCAGAAGCATCGCTGCCCATTACAACATGAACTTCCTGCTGGAGACCATCGACTGGATCCTGAGGATGAACAGttagagtgcgtgtgtgtgcgcgtgtgtgtgcgtgtgtgtgcgtgtgtgtgcgcgtgtgtgcgtgtg

Function

symbol description
pole Predicted to enable DNA binding activity; DNA-directed DNA polymerase activity; and single-stranded DNA 3'-5' exodeoxyribonuclease activity. Predicted to be involved in DNA metabolic process and mitotic cell cycle. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of epsilon DNA polymerase complex. Is expressed in proliferative region. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human POLE (DNA polymerase epsilon, catalytic subunit).

NR:

description
DNA polymerase epsilon catalytic subunit A

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K02324 POLE; DNA polymerase epsilon subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931595.2 True 7291 mRNA 0.53 49 15192658 15225173

Neighbor

gene id symbol gene type direction distance location
pes pes1 coding downstream 15286 15162023 ~ 15177372 (-)
gal3st1a gal3st1,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding downstream 34640 15144185 ~ 15158018 (-)
ppil2 ppil2 coding downstream 51443 15098554 ~ 15141215 (-)
ydjc ydjc coding downstream 254886 14931813 ~ 14937772 (-)
ccl19a.1 NA coding downstream 286658 14904207 ~ 14906000 (-)
si:dkey-98f17.5 si:dkey-98f17.5,LOC108255717,LOC108431725,LOC107755832,LOC107668759,LOC107599615,LOC106580116 coding upstream 65826 15290999 ~ 15311616 (-)
rfc5 rfc5,LOC107668751,LOC107716544,LOC107704514 coding upstream 112311 15337484 ~ 15345795 (-)
tesca tesc coding upstream 419421 15644594 ~ 15652663 (-)
fbxo21 fbxo21,LOC107726726,LOC102799747 coding upstream 431483 15656656 ~ 15668318 (-)
zgc:112294 LOC108255850 coding upstream 604134 15829307 ~ 15832933 (-)
G355726 NA non-coding downstream 118465 15042305 ~ 15074193 (-)
G355728 NA non-coding downstream 136872 15049450 ~ 15055786 (-)
G355732 NA non-coding downstream 166342 14949535 ~ 15026316 (-)
LOC117595933 NA non-coding downstream 221441 14969358 ~ 14971217 (-)
G355725 NA non-coding downstream 237844 14953216 ~ 14954814 (-)
G355848 NA non-coding upstream 99314 15324487 ~ 15380675 (-)
G355916 NA non-coding upstream 294902 15520075 ~ 15523463 (-)
G356143 NA non-coding upstream 574376 15799549 ~ 15800119 (-)
G356142 NA non-coding upstream 576612 15801785 ~ 15801940 (-)
G356211 NA non-coding upstream 688692 15913865 ~ 15914335 (-)
ccl19a.2 NA other downstream 267999 14908796 ~ 14924659 (-)
mrpl41 mrpl41 other downstream 1467800 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4443820 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4675453 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4780972 10370162 ~ 10411686 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 355297 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 607880 15833053 ~ 15841684 (-)
G356331 NA other upstream 914616 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1189516 16414689 ~ 16442957 (-)
si:ch211-102c2.8 LOC108255971 other upstream 1239254 16464427 ~ 16478840 (-)

Expression


Co-expression Network