LOC113542230 (LOC108255680)


Basic Information

Item Value
gene id LOC113542230
gene name LOC108255680
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2786249 ~ 2791574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939601.2
CCGAGGAAAAGCGGAAGTAAACAATGGCAGCTCCGCTAAGCTAGGAGAGTCCAAAGGCGGTTCCAGTGATGAAGGCGACCGTATCCTTTTACACAGCCTACCTGCTGTGTTTGGTGCTCAGcctggtgtgtgtggtgctggtcgTCCACTGGAACGCCTCCTACCGCGGCGGCTTCTCCTGGGACGGGAAGGTCACGCAGTTCAACTGGCATCCCGTGCTCATGGTGGTCGGCCTGGTTGTGCTGTACGGAAACGCCGCTGTATTGTATCGTGTCCCGCTGACCTGGACTCAGGACAAACTGCCATGGAAGATTCTTCATGCCTGCCTCCTCCTGCTTGCTCTGATCTTCACCATCGTGGGCTTGTGTGCCGTGTTCAACTACCACAACGCCAATAATATACCGAACCTTTACTCGCTGCACAGCTGGGTGGGAATCCTCACCAGCGCCTTGTTCGCCGCTCAGtgggttGCTGGATTCGGAGCGTTCCtcctcccgtgctcccccgtGCCTCTGCGAGTGTTCGTCAAACCCACTCACGTGTGGATGGGAGCCATTCTCCTGGTCCTCAGTGTCGTGTCCTGCATCTCAGGCATCAACGAGAAGCTGTTTTCTGTATTaaaaaagggaaCCAATGAGACGCTGCCGTACAACCAGCTGCCACCGGAGGCGGTACTCGGCAATTCACTTGGCGTCGTCATCGTGGCTTTGGCGCTGGTCGTCCTGAAAATCCTGTCCAATCAGACTTGGCAACGTCCCGAGCCAAGGAACGAGGAGGCGGGCTACAGgcAACTGCCAGGAGACAACAGCTGAAGTCTCACAGCCTTTTCCTTTAGCTTTCTTGATGGTGTCTGCGTCGGATTACCGTCTGGATCAGTTTAATGCACAGATACGGAGGTTTATATGATGGGAGTGATGATTTATTCACTTCTAGTTACAccacttgtttgtgtttggacaTTTCATTTCCGTTTTGTAAGTGTGCattgcatcaaaaaaaaaaaaaaaattaaataaaaaaaagctaagcatcaaaaaagtgtgttagtatgataaattaattaaataaataaataaatatgtttagagATTTGTGCTACATTATATGATATATG
>XM_026939602.2
TTTGGTGTGATGTCACCAAAAGCAGGAAACTTTCAGACTTTCAGACTCAGAGCACACATTACGCTGGCACTTGTGTGATTTCGACATTTCAAAGGCTACTCACTTTTATATGCTTTATACCCATTTGGTGGgGCGGTTCCAGTGATGAAGGCGACCGTATCCTTTTACACAGCCTACCTGCTGTGTTTGGTGCTCAGcctggtgtgtgtggtgctggtcgTCCACTGGAACGCCTCCTACCGCGGCGGCTTCTCCTGGGACGGGAAGGTCACGCAGTTCAACTGGCATCCCGTGCTCATGGTGGTCGGCCTGGTTGTGCTGTACGGAAACGCCGCTGTATTGTATCGTGTCCCGCTGACCTGGACTCAGGACAAACTGCCATGGAAGATTCTTCATGCCTGCCTCCTCCTGCTTGCTCTGATCTTCACCATCGTGGGCTTGTGTGCCGTGTTCAACTACCACAACGCCAATAATATACCGAACCTTTACTCGCTGCACAGCTGGGTGGGAATCCTCACCAGCGCCTTGTTCGCCGCTCAGtgggttGCTGGATTCGGAGCGTTCCtcctcccgtgctcccccgtGCCTCTGCGAGTGTTCGTCAAACCCACTCACGTGTGGATGGGAGCCATTCTCCTGGTCCTCAGTGTCGTGTCCTGCATCTCAGGCATCAACGAGAAGCTGTTTTCTGTATTaaaaaagggaaCCAATGAGACGCTGCCGTACAACCAGCTGCCACCGGAGGCGGTACTCGGCAATTCACTTGGCGTCGTCATCGTGGCTTTGGCGCTGGTCGTCCTGAAAATCCTGTCCAATCAGACTTGGCAACGTCCCGAGCCAAGGAACGAGGAGGCGGGCTACAGgcAACTGCCAGGAGACAACAGCTGAAGTCTCACAGCCTTTTCCTTTAGCTTTCTTGATGGTGTCTGCGTCGGATTACCGTCTGGATCAGTTTAATGCACAGATACGGAGGTTTATATGATGGGAGTGATGATTTATTCACTTCTAGTTACAccacttgtttgtgtttggacaTTTCATTTCCGTTTTGTAAGTGTGCattgcatcaaaaaaaaaaaaaaaattaaataaaaaaaagctaagcatcaaaaaagtgtgttagtatgataaattaattaaataaataaataaatatgtttagagATTTGTGCTACATTATATGATATATG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K16295 CYB561A3, CYBASC3; lysosomal membrane ascorbate-dependent ferrireductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939601.2 False 1114 mRNA 0.50 6 2786249 2791574
XM_026939602.2 True 1190 mRNA 0.49 6 2786249 2790896

Neighbor

gene id symbol gene type direction distance location
LOC113542232 LOC108255682,LOC108434266,LOC108417841,LOC108415785,LOC107715185,LOC107581013,LOC107745493 coding downstream 312 2785439 ~ 2785937 (-)
zgc:153409 LOC106958509,LOC106963510,LOC107723971,LOC107690788,LOC107671222 coding downstream 1175 2784561 ~ 2785074 (-)
loxl2b loxl2b,LOC108255679,LOC108434263,LOC107673422,LOC107721556 coding downstream 12846 2746147 ~ 2773403 (-)
sfrp1a sfrp1 coding downstream 73863 2700997 ~ 2712386 (-)
LOC113542490 NA coding downstream 304066 2465572 ~ 2482183 (-)
hdr NA coding upstream 1881 2793455 ~ 2801554 (-)
tbx3b tbx2a,LOC108255409 coding upstream 376704 3168278 ~ 3200058 (-)
araf araf,LOC108255753 coding upstream 437530 3229104 ~ 3242841 (-)
klf9 klf9 coding upstream 515594 3307168 ~ 3312856 (-)
cemip2 tmem2 coding upstream 719541 3511115 ~ 3546480 (-)
G348296 NA non-coding downstream 191926 2549097 ~ 2594323 (-)
G348311 NA non-coding downstream 237239 2548123 ~ 2549010 (-)
G348310 NA non-coding downstream 238209 2546572 ~ 2548040 (-)
G348309 NA non-coding downstream 239734 2545415 ~ 2546515 (-)
G348283 NA non-coding downstream 361918 2423715 ~ 2424331 (-)
G348640 NA non-coding upstream 358427 3150001 ~ 3150416 (-)
G348661 NA non-coding upstream 407108 3198682 ~ 3198896 (-)
G348663 NA non-coding upstream 412517 3204091 ~ 3205284 (-)
G348662 NA non-coding upstream 413931 3205505 ~ 3207834 (-)
G348669 NA non-coding upstream 431726 3223300 ~ 3223499 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other downstream 353 2784677 ~ 2785896 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other downstream 121767 2601534 ~ 2664482 (-)
LOC113542580 NA other downstream 554682 2179539 ~ 2231567 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 658604 1982054 ~ 2127645 (-)
G348145 NA other downstream 787779 1995902 ~ 1998470 (-)
unc5db unc5d,LOC108434269 other upstream 19970 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 364468 3156042 ~ 3166254 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other upstream 528211 3319785 ~ 3387730 (-)
trpm6 LOC108255945,LOC108438703 other upstream 1040511 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 1090442 3882016 ~ 4204104 (-)

Expression


Co-expression Network