zgc:153409 (LOC106958509,LOC106963510,LOC107723971,LOC107690788,LOC107671222)


Basic Information

Item Value
gene id zgc:153409
gene name LOC106958509,LOC106963510,LOC107723971,LOC107690788,LOC107671222
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2784561 ~ 2785074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939605.1
CACAGCGCGAACAGGAAAGGCAGAATACAGCAGGATGTCTGGGCGAGGAAAAGGCGGAAAGGGACTCGGGAAAGGCGGCGCCAAGCGGCATCGTAAAGTTTTGCGAGATAACATCCAGGGTATCACCAAACCCGCCATCAGGCGTCTGGCTCGCCGCGGCGGCGTGAAGCGTATTTCCGGTCTGATCTACGAGGAGACTCGCGGGGTGCTGAAGGTCTTTCTGGAGAACGTGATCCGCGATGCCGTGACTTACACCGAGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGGACGCACCCTGTACGGCTTCGGCGGCTGAACGCGCACTTCCGGACTTCACGctctgaacaaacaaaaactcctAAAGGCTCTTTTAAGGGCCGCCCAGTTATTCTCTCAGAGAGCAAACTCCAAACTCTGCCTGTTCACTTTCACTGGGATTGTTGTGagatttatttctgtacaaTAAACATGTTTCTTATTCTaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC105896809

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11254 H4; histone H4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939605.1 True 514 mRNA 0.54 1 2784561 2785074

Neighbor

gene id symbol gene type direction distance location
loxl2b loxl2b,LOC108255679,LOC108434263,LOC107673422,LOC107721556 coding downstream 11158 2746147 ~ 2773403 (-)
sfrp1a sfrp1 coding downstream 72175 2700997 ~ 2712386 (-)
LOC113542490 NA coding downstream 302378 2465572 ~ 2482183 (-)
LOC113542614 LOC108255713 coding downstream 326156 2435324 ~ 2458405 (-)
ogfod2 ogfod2 coding downstream 421406 2357271 ~ 2363155 (-)
LOC113542232 LOC108255682,LOC108434266,LOC108417841,LOC108415785,LOC107715185,LOC107581013,LOC107745493 coding upstream 365 2785439 ~ 2785937 (-)
LOC113542230 LOC108255680 coding upstream 1175 2786249 ~ 2791574 (-)
hdr NA coding upstream 8381 2793455 ~ 2801554 (-)
tbx3b tbx2a,LOC108255409 coding upstream 383204 3168278 ~ 3200058 (-)
araf araf,LOC108255753 coding upstream 444030 3229104 ~ 3242841 (-)
G348296 NA non-coding downstream 190238 2549097 ~ 2594323 (-)
G348311 NA non-coding downstream 235551 2548123 ~ 2549010 (-)
G348310 NA non-coding downstream 236521 2546572 ~ 2548040 (-)
G348309 NA non-coding downstream 238046 2545415 ~ 2546515 (-)
G348283 NA non-coding downstream 360230 2423715 ~ 2424331 (-)
G348640 NA non-coding upstream 364927 3150001 ~ 3150416 (-)
G348661 NA non-coding upstream 413608 3198682 ~ 3198896 (-)
G348663 NA non-coding upstream 419017 3204091 ~ 3205284 (-)
G348662 NA non-coding upstream 420431 3205505 ~ 3207834 (-)
G348669 NA non-coding upstream 438226 3223300 ~ 3223499 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other downstream 120079 2601534 ~ 2664482 (-)
LOC113542580 NA other downstream 552994 2179539 ~ 2231567 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 656916 1982054 ~ 2127645 (-)
G348145 NA other downstream 786091 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 955916 1827898 ~ 1828645 (-)
unc5db unc5d,LOC108434269 other upstream 26470 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 370968 3156042 ~ 3166254 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other upstream 534711 3319785 ~ 3387730 (-)
trpm6 LOC108255945,LOC108438703 other upstream 1047011 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 1096942 3882016 ~ 4204104 (-)

Expression


Co-expression Network