ccdc125 (ccdc125)


Basic Information

Item Value
gene id ccdc125
gene name ccdc125
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1892268 ~ 1900064 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939612.2
TACAGTTTTTGTagtgatagtttttttttgtgatggtGATAGCGTCTGGAGTTGTTTGAATCTTCAGGAACATGGATATCTTACACAAAAGCACCAGAATAGTGTTATTACACTTTACTCGGTGTAGGTCGTGTATCCTCTGAGGAGAAAATGTTGTAATCCCCCTTTAAAACACATGCAGGAAGGAAAAACCCTGCAGCTCCATTAGATCCGCTTTAGAAGTCGGGCTGGAAGTGTGTGACACACCCGTGTGTGCTGTGTGATCGCCGTGCTGTGGATATGTACAGCCTGTAACCTTCCCAGAATAACAACTTAATCCTTCTGATAGATGCTTTATTTCCGCCATCGTTCCTTTTGCTCTGCTGCTCAGACAGGTGCTCAGGTTACAGGTCAAGCTGGAAATGATGCACGCAGGCCGAGAACAAGCGAGTACCACGGATCAGCCCTCAGAAGATGACATGGCGGAGGGAGATCTCGGGGACGGCACCCGGTCCGTAGGAGGGACCCGTCGGTCACGGAACAGGAGCAAAGGGGACTATTTGGATCTGCTGCCGCAGGCGAAACCCTCCAAATGGGGCAGTGAGGATGGGGGTGGATCTTTCTCCTGGACATCATGCAGTGCAATGTACACCGCTTTTAGAAAGGAGCTGGAGGCAGAGAGGATCTCTCAGTGGAGGATCAGAGACTCAGAGAGCAGCGCCGGTGAGTCCAGTGAGGCATTGCAGAGGAGACTGCAGGAAGTAACAGAGGAAGTGGCGCTGCTGAGGACAGAACTGGAAGTGACGCATCGACATCTTGAAGGCAAACATGAAGCTCTGAGAATCCTGCAAGGCCAAGCCATATTAGATAAAGCCACCAGTCACACCAAGATCTTGCTGCAGAAGAGTGAAGAGCGGACCAAAGCTCTGGAAAAGGAAGTGAACGCTTTGCAGTGGGAGATCACCTTTAACCAGGTGCAGTTTAAGAACATAGAGCACGCGTGGGAGCTGAAATACGACAGAGTGTGTGCAGAGAACCAGGCCTTGAGCAAAGCTCTTGATGAGAGACTGGAACAGTTCCAGGAGCTGCGCAGAGAGAACACGTcATTGAGTCAGCAGTGTCTGGAGCTCCTGGGCTTACTGAGCGCTCGGGAGAGAAGAGACTTCCAGAAGACCCAGCCACCATGCAGTCAAAGCAGAGAGGGATCTGCACTGGAGCTGGCTGTGTATGGGGCATGTAAGTGCAGCTCCAACGCAGGAGAGCCGTGTTCCTGTGCGAAGAGCGCAGCTGCAAGCCGCAAACAAGTCCTTCAGCTTAAACAAGAGctggagctgcagaggaggaggaaggacgAAGCGTACGTGATGGTGGATGCGTTCCGGATCGCATTCGAGCAGCAGCTGAGGAGAGGGAGCGAGAAAGTGCTGCAGCTGGCAgaaagcgacacacacacagcagacagaGGGAAGCAGGGCTCTGCTGGTGTGACTCAGACGCTGAAGAGATTTCTGCCGTCTCTCAGAGAAGGAAAAGTCCCGAGCAACCCGAAAGAAACCCTGCAGCTGCTGCTCGATCTGTTGAGCGATAAAGAGGAGGCCTTGGCCCATCAGAGGAAGGTCAGCTACATGTTAGCACGGAGCTATGAGGACCTGGAGAAACGTCTTCAGGCACAGCTCAAGGAGCTGGACATCTCACACAATGGGGCTGAATTTAAACAGGAAGCGGACAGATCCAAATGCATAGTGGACTCTAAAGCTGATCATCCGTCACGTTCACGTGAAAATACACCGGTGGTCATGGACGACCATGAAGAGAAGACGAGAATGGTGGGTTCACAAAATGAGGGCGAGGGGTAAACAGGAGGAGTAACGAGATCTTGAGACCTTAAGAAAAGAGTGTAATGAACATTCTGAATGTTGAAATGTTATAAGACAATCACAGGACTGATATTtgagttattatgtaataaatgcCTACTACTGTTTACAAGGCGTTGTAGATGATTTAGATATGGTTTGTTTTGCACATTTGTTCATCTTTATTTCAAATCTGCTTAagttgaaatgatttttttgtgtcaAATAAGCCTGCTGACAGGGGGTggaaaagtactgagaaattatacttgaAAGTATAAATCTTACTAAACTAAAAGTATCCAAccaaaaatatacttttaaatgtaatcatGTATTAACAAGtaatatggaaatgtttttaacagATGATTGGATGGTTttaaactaaaatgtaaatcaaatacaaataaaatgtatctgTTCtgatgtatagtgtatagtcaATTACTAGATGAGAAGTGAAGAGATCTTTGAGATTTTATATGAGAACTTTGTAGGTCTAAATAATGTAAagagtaaatatatatttgtccCCCTTGGAATATAGATAGGTAAGAgtattcaatttaattaaaaaatactcaGGGAAATTATAAATAACCCAAAACTAATACTTAATTATATTAGCAatgtacaattactcaagtataaTTCCACTCCTGTCTGCTGAACCATGAAGCACAGAATTGAAATCTgcctttttaatcattttatgtaCTTtgatacacaaaataaaattttt
>XM_034299260.1
ATCTCGGGGACGGCACCCGGTCCGTAGGAGGGACCCGTCGGTCACGGAACAGGAGCAAAGGGGACTATTTGGATCTGCTGCCGCAGGCGAAACCCTCCAAATGGGGCAGTGAGGATGGGGGTGGATCTTTCTCCTGGACATCATGCAGTGCAATGTACACCGCTTTTAGAAAGGAGCTGGAGGCAGAGAGGATCTCTCAGTGGAGGATCAGAGACTCAGGAAGTGGCGCTGCTGAGGACAGAACTGGAAGTGACGCATCGACATCTTGAAGGCAAACATGAAGCTCTGAGAATCCTGCAAGGCCAAGCCATATTAGATAAAGCCACCAGTCACACCAAGATCTTGCTGCAGAAGAGTGAAGAGCGGACCAAAGCTCTGGAAAAGGAAGTGAACGCTTTGCAGTGGGAGATCACCTTTAACCAGGTGCAGTTTAAGAACATAGAGCACGCGTGGGAGCTGAAATACGACAGAGTGTGTGCAGAGAACCAGGCCTTGAGCAAAGCTCTTGATGAGAGACTGGAACAGTTCCAGGAGCTGCGCAGAGAGAACACGTcATTGAGTCAGCAGTGTCTGGAGCTCCTGGGCTTACTGAGCGCTCGGGAGAGAAGAGACTTCCAGAAGACCCAGCCACCATGCAGTCAAAGCAGAGAGGGATCTGCACTGGAGCTGGCTGTGTATGGGGCATGTAAGTGCAGCTCCAACGCAGGAGAGCCGTGTTCCTGTGCGAAGAGCGCAGCTGCAAGCCGCAAACAAGTCCTTCAGCTTAAACAAGAGctggagctgcagaggaggaggaaggacgAAGCGTACGTGATGGTGGATGCGTTCCGGATCGCATTCGAGCAGCAGCTGAGGAGAGGGAGCGAGAAAGTGCTGCAGCTGGCAgaaagcgacacacacacagcagacagaGGGAAGCAGGGCTCTGCTGGTGTGACTCAGACGCTGAAGAGATTTCTGCCGTCTCTCAGAGAAGGAAAAGTCCCGAGCAACCCGAAAGAAACCCTGCAGCTGCTGCTCGATCTGTTGAGCGATAAAGAGGAGGCCTTGGCCCATCAGAGGAAGGTCAGCTACATGTTAGCACGGAGCTATGAGGACCTGGAGAAACGTCTTCAGGCACAGCTCAAGGAGCTGGACATCTCACACAATGGGGCTGAATTTAAACAGGAAGCGGACAGATCCAAATGCATAGTGGACTCTAAAGCTGATCATCCGTCACGTTCACGTGAAAATACACCGGTGGTCATGGACGACCATGAAGAGAAGACGAGAATGGTGGGTTCACAAAATGAGGGCGAGGGGTAAACAGGAGGAGTAACGAGATCTTGAGACCTTAAGAAAAGAGTGTAATGAACATTCTGAATGTTGAAATGTTATAAGACAATCACAGGACTGATATTtgagttattatgtaataaatgcCTACTACTGTTTACAAGGCGTTGTAGATGATTTAGATATGGTTTGTTTTGCACATTTGTTCATCTTTATTTCAAATCTGCTTAagttgaaatgatttttttgtgtcaAATAAGCCTGCTGACAGGGGGTggaaaagtactgagaaattatacttgaAAGTATAAATCTTACTAAACTAAAAGTATCCAAccaaaaatatacttttaaatgtaatcatGTATTAACAAGtaatatggaaatgtttttaacagATGATTGGATGGTTttaaactaaaatgtaaatcaaatacaaataaaatgtatctgTTCtgatgtatagtgtatagtcaATTACTAGATGAGAAGTGAAGAGATCTTTGAGATTTTATATGAGAACTTTGTAGGTCTAAATAATGTAAagagtaaatatatatttgtccCCCTTGGAATATAGATAGGTAAGAgtattcaatttaattaaaaaatactcaGGGAAATTATAAATAACCCAAAACTAATACTTAATTATATTAGCAatgtacaattactcaagtataaTTCCACTCCTGTCTGCTGAACCATGAAGCACAGAATTGAAATCTgcctttttaatcattttatgtaCTTtgatacacaaaataaaatttttt

Function

symbol description
ccdc125 Predicted to act upstream of or within regulation of cell motility. Orthologous to human CCDC125 (coiled-coil domain containing 125).

NR:

description
coiled-coil domain-containing protein 125

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939612.2 True 2580 mRNA 0.45 12 1892269 1900064
XM_034299260.1 False 2051 mRNA 0.44 10 1892268 1898413

Neighbor

gene id symbol gene type direction distance location
fam151b fam151b coding downstream 142 1886652 ~ 1892126 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding downstream 333744 1535595 ~ 1558524 (-)
LOC113528310 NA coding downstream 450076 1433006 ~ 1442192 (-)
LOC113524989 NA coding downstream 460787 1425099 ~ 1431481 (-)
LOC113524983 NA coding downstream 471562 1350316 ~ 1420706 (-)
rad17 rad17 coding upstream 1095 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 51565 1951629 ~ 1968139 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding upstream 256922 2156986 ~ 2163920 (-)
LOC113542577 NA coding upstream 264409 2164473 ~ 2166382 (-)
LOC113542514 NA coding upstream 269271 2169335 ~ 2178059 (-)
G348094 NA non-coding downstream 16512 1794830 ~ 1875756 (-)
G348092 NA non-coding downstream 21122 1790117 ~ 1871146 (-)
G348088 LOC108255559 non-coding downstream 26194 1785025 ~ 1866074 (-)
G347905 LOC108255614,LOC108255436,LOC108255578,LOC108255576,LOC108255573 non-coding downstream 125339 1763211 ~ 1766929 (-)
G347900 LOC108255575,LOC108255576,LOC108255573,LOC108255614 non-coding downstream 149968 1734913 ~ 1742300 (-)
G348143 NA non-coding upstream 86119 1986183 ~ 1987047 (-)
G348147 NA non-coding upstream 133493 2033557 ~ 2033864 (-)
G348180 NA non-coding upstream 211599 2111663 ~ 2181860 (-)
G348200 NA non-coding upstream 241552 2141616 ~ 2142102 (-)
LOC117595926 NA non-coding upstream 342144 2242208 ~ 2242816 (-)
G348096 LOC108255538 other downstream 63623 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 181360 1450335 ~ 1710908 (-)
LOC113542373 NA other downstream 361874 1505639 ~ 1530394 (-)
LOC113524988 NA other downstream 522806 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 613401 1268309 ~ 1278867 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 81990 1982054 ~ 2127645 (-)
G348145 NA other upstream 95838 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 279475 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 701470 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 873658 2773722 ~ 2831679 (-)

Expression


Co-expression Network