fam78aa (fam78aa,LOC108255801,LOC108423592,LOC107740833,LOC107731022,LOC107552624)


Basic Information

Item Value
gene id fam78aa
gene name fam78aa,LOC108255801,LOC108423592,LOC107740833,LOC107731022,LOC107552624
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6236120 ~ 6239812 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939676.2
agagagagaaataaagccTGACAGCTGAAGGGTTTCGTTACACGCCAGGGAACGTGCCGAGCCTTTAATAGCACAAGCGCGAAATGAAGTAGCGCGACTTGCAGTTTAACTCCCTCAGCCATCCCGAGGGAAACAGCAGAACATCTATTCACTGCCACTTCAGAAAGTGTCACTTTAACTTACAGCCCTGATGTCGAGCTCGGGCTCGAGCTGAACTGAGTGCATGGAGATTTGATTTCTTCTCGCCATCCCGTGGTGGAGGTTATTAAGGTGGAGAGCAGCGGAGTTCAGCGCCTCGTTCAGCACAGCacactgctgctactgctattaGTGCAACTGCTCTTCATGCATTGCTTGAGGACTCCGTGTAGCAGACTGATGGATGCTAATAGACCTGACCGTCACCACCATGGGGTGCATGCAGAGTGCGGGCACACATTTTTACGAAAACATCAGAGTCCTCGAACTGAACACCTCTATCGATTCTAATCCTACTGTCATTGACGAATCATCCAATGTAGTACTGAGGTACCGTACACCCTACTTTAGAGCTGCTGCCCGTGTGCAGGTGCCACCAGTGGTCCGTAAAGAAATTTGGACTGTGGGCTGGATCCAGGCATGCAACCAAATGGATTTCTTCAATTACTATGGAGAAGAAGGAATATCGAGCTGGGAGCTCCCTGAGCTGAGAGATGGACGCATCAAGGCCATCAGTGATTCAGATGGAGTGAACTACCCATGGTATGGCTGTACCACTGAGATGTACACCATCGTAGGACCCACCAAGAGGAGCACCACCCTCACTGTGAGCATGAACGACAACTTCTGCCCCAGTGTGACATGGAGCATCCCCACAGGCACCACCAGTGTCCCGCCACTTTTGAGCTCCATCCAGAGAGACCAGCGCTTCACCACCTGGCTGGTGGCCATGAACGAGGCCTCAGCTGAGATGGTACTGCTCAGGACCATTCGCTGGAGGATGCAGCTCGCTATTGAGGTGGATCCCAAGAAGCCCCTGGGACAGAGAGCTCGCCTCATGGATCATCTTGCTCAGGAACAGCCAGAGATCTTGGCTACAAATGAACCCATCCCACCCAATGCCTTGGTGAAACCCAATGCCAATGATGCTCAGGTGCTAATTTGGAGACCTAAAAGGGGGGAGTCGGTTGTGGTCATCCCCCCTAAGTATTGAATTGAGTGAAAAAAGCAAACACTTGAATGTTTTAGACTTGAATATTTTACCTCCTTCCTCTCTCACTGAACCTCAAgcagtacattttttatttattgatttattgatctTTTGTTGGATGTTCAGAAATGAAAGCATGGCCTCAGATTAACAGCATTCTGCATTAATGTTATGCCATATGTTGAATTATTTCAGGAATGTTCAGAATTTTGCATGCATGCAGTTCTGTGAACAGGAATGAGTAGCCATGTCCACTTTATGTTAAATTTACAGAGATGAGTacgaaaaaaatatttgtaatattttattagtgAGATGTGGCCTAAGATTTTAAAGCAGATGCATTATAGAAGATGCTGCCTTTGGACTTTAATTCATATAGTATGGAACAATGTTGAATTTATGAGCTGATGTGAAAAGCATCTGTGCAGTGGTGGGCAACTCACAGATCATACTCAGGTTAGTGCTGAATGGCATTTCAGGTTTTCAACAATGTTCATCTGTTTTTCTACCCAACTAGGATTTTGTTGTTTCACACATTGTCACAGATGTATAACAATGAGCATGCAAAAATgtaagtgtgatttttttggtCAATATCAAAAtctgtgggaaaaaaattctcaaaGACTCTTGATTGTCTGCATCACCTTCTATGTAAGATTTTTCTATACACATGATTCACTCTGTAGAGTTGTTGTTGTAGACAACAACATCTATAGAACAAAAATTCTTGATAATATAATGGCATCAACTTGTAAAAGGTTACCTCCAATTTCCAAAATCTAATTCTGAAAAACTTTTGATCATCTGCATCATATCCAATGTAAAATTAATATTCACAAGAATCACTCTGTGGCTATAGTTGTAGCATAGGAGACTCATCTCAGTGGGGACTGTGTGCCCTGATTCCAAACTGCTCATAGCTGCCCCAATTTTTACTCATGAACCATCTGCACAGATGTTAGAAAGCTGATAATCTTTGTTTGCCCTTTCCTTTTCATTTGTTctatgacatacagtatgtgtgtgctcAGTACAGCAGGGAGGGAACTCACTACTAAGAATATAGAAATCATTTCACAGTGAAAACCGGttaatgtcatactttttaagtaaacaattaaaaatatataatataagagAGGAATTGCGGAATTGGAAAAGTCTGTCTGGATATTGCAAATTCTAGGTGTTTTAGACGTGTTGTGGTCTCTTAGAGGTGGCCTCAAGGGACAGGAGCACCTCCACCTTTGGCTTCCATAAATTGTAAGTGGAGCAGCATTTCAGTTCTAGAGTTTATTTGAAAATGGACACAGTGCGATAATACT
>XM_026939677.2
agagagagaaataaagccTGACAGCTGAAGGGTTTCGTTACACGCCAGGGAACGTGCCGAGCCTTTAATAGCACAAGCGCGAAATGAAGTAGCGCGACTTGCAGTTTAACTCCCTCAGCCATCCCGAGGGAAACAGCAGAACATCTATTCACTGCCACTTCAGAAAGTGTCACTTTAACTTACAGCCCTGATGTCGAGCTCGGGCTCGAGCTGAACTGAGTGCATGGAGATTTGATTTCTTCTCGCCATCCCGTGGTGGAGGTTATTAAGGTGGAGAGCAGCGGAGTTCAGCGCCTCGTTCAGCACAGCacactgctgctactgctattaGTGCAACTGCTCTTCATGCATTGCTTGAGGACTCCGTGTAGCAGAGCTGCTGCCCGTGTGCAGGTGCCACCAGTGGTCCGTAAAGAAATTTGGACTGTGGGCTGGATCCAGGCATGCAACCAAATGGATTTCTTCAATTACTATGGAGAAGAAGGAATATCGAGCTGGGAGCTCCCTGAGCTGAGAGATGGACGCATCAAGGCCATCAGTGATTCAGATGGAGTGAACTACCCATGGTATGGCTGTACCACTGAGATGTACACCATCGTAGGACCCACCAAGAGGAGCACCACCCTCACTGTGAGCATGAACGACAACTTCTGCCCCAGTGTGACATGGAGCATCCCCACAGGCACCACCAGTGTCCCGCCACTTTTGAGCTCCATCCAGAGAGACCAGCGCTTCACCACCTGGCTGGTGGCCATGAACGAGGCCTCAGCTGAGATGGTACTGCTCAGGACCATTCGCTGGAGGATGCAGCTCGCTATTGAGGTGGATCCCAAGAAGCCCCTGGGACAGAGAGCTCGCCTCATGGATCATCTTGCTCAGGAACAGCCAGAGATCTTGGCTACAAATGAACCCATCCCACCCAATGCCTTGGTGAAACCCAATGCCAATGATGCTCAGGTGCTAATTTGGAGACCTAAAAGGGGGGAGTCGGTTGTGGTCATCCCCCCTAAGTATTGAATTGAGTGAAAAAAGCAAACACTTGAATGTTTTAGACTTGAATATTTTACCTCCTTCCTCTCTCACTGAACCTCAAgcagtacattttttatttattgatttattgatctTTTGTTGGATGTTCAGAAATGAAAGCATGGCCTCAGATTAACAGCATTCTGCATTAATGTTATGCCATATGTTGAATTATTTCAGGAATGTTCAGAATTTTGCATGCATGCAGTTCTGTGAACAGGAATGAGTAGCCATGTCCACTTTATGTTAAATTTACAGAGATGAGTacgaaaaaaatatttgtaatattttattagtgAGATGTGGCCTAAGATTTTAAAGCAGATGCATTATAGAAGATGCTGCCTTTGGACTTTAATTCATATAGTATGGAACAATGTTGAATTTATGAGCTGATGTGAAAAGCATCTGTGCAGTGGTGGGCAACTCACAGATCATACTCAGGTTAGTGCTGAATGGCATTTCAGGTTTTCAACAATGTTCATCTGTTTTTCTACCCAACTAGGATTTTGTTGTTTCACACATTGTCACAGATGTATAACAATGAGCATGCAAAAATgtaagtgtgatttttttggtCAATATCAAAAtctgtgggaaaaaaattctcaaaGACTCTTGATTGTCTGCATCACCTTCTATGTAAGATTTTTCTATACACATGATTCACTCTGTAGAGTTGTTGTTGTAGACAACAACATCTATAGAACAAAAATTCTTGATAATATAATGGCATCAACTTGTAAAAGGTTACCTCCAATTTCCAAAATCTAATTCTGAAAAACTTTTGATCATCTGCATCATATCCAATGTAAAATTAATATTCACAAGAATCACTCTGTGGCTATAGTTGTAGCATAGGAGACTCATCTCAGTGGGGACTGTGTGCCCTGATTCCAAACTGCTCATAGCTGCCCCAATTTTTACTCATGAACCATCTGCACAGATGTTAGAAAGCTGATAATCTTTGTTTGCCCTTTCCTTTTCATTTGTTctatgacatacagtatgtgtgtgctcAGTACAGCAGGGAGGGAACTCACTACTAAGAATATAGAAATCATTTCACAGTGAAAACCGGttaatgtcatactttttaagtaaacaattaaaaatatataatataagagAGGAATTGCGGAATTGGAAAAGTCTGTCTGGATATTGCAAATTCTAGGTGTTTTAGACGTGTTGTGGTCTCTTAGAGGTGGCCTCAAGGGACAGGAGCACCTCCACCTTTGGCTTCCATAAATTGTAAGTGGAGCAGCATTTCAGTTCTAGAGTTTATTTGAAAATGGACACAGTGCGATAATACT

Function

symbol description
fam78aa Orthologous to human FAM78A (family with sequence similarity 78 member A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939676.2 True 2523 mRNA 0.43 3 6236120 6239812
XM_026939677.2 False 2348 mRNA 0.43 3 6236120 6239812

Neighbor

gene id symbol gene type direction distance location
LOC113542600 LOC108255798 coding downstream 5837 6218805 ~ 6230283 (-)
gpsm1a LOC108255912,LOC108423595,LOC107595532,LOC107665019 coding downstream 60485 6172304 ~ 6175635 (-)
ak5l ak5l,LOC108255392,LOC108423692,LOC107595531,LOC107731024,LOC107665022,LOC107740835 coding downstream 63964 6164767 ~ 6172156 (-)
cmlc1 cmlc1,LOC107374630,LOC108230875,LOC103473836 coding downstream 74487 6160872 ~ 6161633 (-)
ciz1b LOC108256061 coding downstream 282733 5943302 ~ 5953387 (-)
brd3b LOC108255802,LOC107665032,LOC107740804 coding upstream 11119 6250931 ~ 6267587 (-)
rxrab LOC108255946,LOC108423686,LOC103046247,LOC107660328,LOC107672569,LOC107552637,LOC107740802,LOC107731035 coding upstream 41882 6281694 ~ 6327828 (-)
lix1 lix1 coding upstream 203892 6443704 ~ 6452129 (-)
zbtb26 zbtb26,LOC103133383,LOC106934410,LOC106934416,LOC106930504,LOC103152387 coding upstream 236557 6476369 ~ 6479116 (-)
krt1-c5 LOC108255341,LOC108423676,LOC107740828,LOC106585415,LOC105014123 coding upstream 248675 6488487 ~ 6492858 (-)
LOC117595975 NA non-coding downstream 294288 5938466 ~ 5941832 (-)
G350114 NA non-coding downstream 505400 5730462 ~ 5730720 (-)
LOC117595899 NA non-coding downstream 525646 5707923 ~ 5710474 (-)
G350090 NA non-coding downstream 545351 5690361 ~ 5690769 (-)
G350061 NA non-coding downstream 575805 5660100 ~ 5660315 (-)
G350513 NA non-coding upstream 69320 6309132 ~ 6310450 (-)
LOC117595904 NA non-coding upstream 143292 6383104 ~ 6388571 (-)
G350664 NA non-coding upstream 455043 6694855 ~ 6695063 (-)
G350714 NA non-coding upstream 502581 6742393 ~ 6742602 (-)
LOC113537000 NA non-coding upstream 662481 6902293 ~ 6914343 (-)
pappab LOC108255326,LOC108423596 other downstream 115161 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 657139 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 712839 5362282 ~ 5523281 (-)
G349951 NA other downstream 871838 5321513 ~ 5364282 (-)
hip1rb hip1r,LOC108255864 other downstream 908568 5248648 ~ 5327552 (-)
LOC113542569 NA other upstream 106851 6346663 ~ 6352372 (-)
G350867 NA other upstream 525102 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 1345660 7585472 ~ 7597962 (-)
card9 card9 other upstream 1363095 7602907 ~ 7607466 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 2313835 8553647 ~ 8556676 (-)

Expression


Co-expression Network