lix1 (lix1)


Basic Information

Item Value
gene id lix1
gene name lix1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6443704 ~ 6452129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939687.2
GCTAATTAGTTCAGCTCTTGACAAAGGTGGGCCAGCCACAGAAGAGGAGCTGTAGTGAGAGCTTAACAGGGCTCCACACACGGCTCTCAAGCCTGcagcagagaggaggagaagggtTCCCCTCACACTTTCCCAATCAGAGCTGGGGTTTGTAGAGAACCGTTGTTCCTTACCCCAGAGCATATGAGAGGGCTCACAGGCATAGCAAGAGTTACTGCTGGACATTTGGGACATGAGAGATGACTTCCACACCAGATTCAGATGATGACAGAGCCTTTAAAGACTCTCTCACACTGCTGTTGAGATAAGTGACAGGCCTAAGCTGGAGGTAAATCTTTTCTGTTTGAGCCATGACATCAGCTCTCTGTGGCACATCTCAAGTGGAGAGATTTACCAGAGGTCTGAAACCACAtaataaaaaagTGAATGTTGTTGGAATGCTGCATCAGTTCTGGGAGCAAAAACAGGTGAACGATGGCACAATCGAGACAGAGAACCTAGTAGTTTATGAATCCGTTCCCTCACCAGGACCTCCATTTATCTGCTATGTCACCTTACCAGGAGGGAGCTGCTTTGGCAACTACAAGTATTGCTACACAAAGGCAGAAGCCAGACGTGACGCAGCTCGTATTGCTCTGATGAACTCAACATTCAATGATTTGCCCTGTCGTCGTATCACTCCAGAATTCATAACCCGCAGCATAGAGGAGGCTGTCGCCACTACCAGTGGTAACATGGAGGATGCCTCAGACCCGAGCACCAGTTTAGGAGCTTATTATCTCATGCTGAAATCCAACACAGGAAAAACCATGCTGGAATTTCAGgaattaATGACAGTGTTTCAGCTGTTGCACTGGAACGGGACACTGAAGGCTTTTAGGGAGAGGAGATGTAGTCGTCAGgagGTGATCAGCTACTACTCTGAGAAACGGCTGGATGAGTGTATGCGTAGTCACATGGCTCTGGACTGGCTgcagagggagaggaagaggccAGGGCTGCTCTCACGGGAGCTGCAGCTGTCTCTCAGAGAGTTGGCCCATGCTCGGCAGGCTGGCCGTGAGCTCCGCTTCTACAAGGAAAAGAAGGAGATCCTCAGCCTGGCGCTCAGTCAGGCCTCCACTGAGGAACTGCAGGCCTACTGTGCGGAGGAAGAAAAAGAGTGCTGGAGGAAAGAAGAAGCTGCATTGGAGTATCTCACGTGTGGGGGCCACTGTGTGGAGGGTAGCATGGTGGACTCGTTAGAACATTGTGAGTTTTATTACCTGGAGAGTGAGAGTGACAAAGAGTCACTgggctgaagtgtgtgtgtgtttgtgtgtgtggggtgagtTTTGGGTGAAGGGAAGGTCCTTAGATTCACATTGAAGAAAAGAGCCTGTATGTTGTATATTTTCTACTCCTATGTAGAGTTCTTTTTCAGTGTACTGTAATGTGTCTGCAGCTAAATGAGCTCCTGTGTAAATCGGATTTATTTAGTAGTAAATGTGTTAGTAGTACATGTAGGATTTGAACTTCTGGAGAGCAGCTCCAGCTCTCTTATTGTTTGGACTGAGAATTTGGCTTGCATTGAGCAAAAATCATTTTGTATTGCCTTGGGATTTAGAAGGGAATGTAAATAAAGGCTGATACTTTTTGCTTCGGCCACAGGGTGCCGCCATATCCTGTGAATGGCTGGTCCCCAGAACTAGGGTATAAGATGTTTCTTCCCCAGATCTGTACAGGCCATTTTCCCAATAAactgaatgggaaaaaaaacagtaataatcaTGAAAGTTTTAAGTTAAACTCCTCTCTTTAATAGTGTTTTAACTGTATTCTGTCACTGTGTACTCTTAGATCTTTTGATAGTTAAGATTTCTTAGATTAATAAAGTGGTTCTACTTGAACCCTTTTCAGTAGGTA
>XM_026939688.2
AATTAGTTCAGCTCTTGACAAAGGTGGGCCAGCCACAGAAGAGGAGCTGTAGTGAGAGCTTAACAGGGCTCCACACACGGCTCTCAAGCCTGcagcagagaggaggagaagggtTCCCCTCACACTTTCCCAATCAGAGCTGGGGTTTGTAGAGAACCGTTGTTCCTTACCCCAGAGCATATGAGAGGGCTCACAGGCATAGCAAGAGTTACTGCTGGACATTTGGGACATGAGAGATGACTTCCACACCAGATTCAGATGATGACAGAGCCTTTAAAGACTTGAATGTTGTTGGAATGCTGCATCAGTTCTGGGAGCAAAAACAGGTGAACGATGGCACAATCGAGACAGAGAACCTAGTAGTTTATGAATCCGTTCCCTCACCAGGACCTCCATTTATCTGCTATGTCACCTTACCAGGAGGGAGCTGCTTTGGCAACTACAAGTATTGCTACACAAAGGCAGAAGCCAGACGTGACGCAGCTCGTATTGCTCTGATGAACTCAACATTCAATGATTTGCCCTGTCGTCGTATCACTCCAGAATTCATAACCCGCAGCATAGAGGAGGCTGTCGCCACTACCAGTGGTAACATGGAGGATGCCTCAGACCCGAGCACCAGTTTAGGAGCTTATTATCTCATGCTGAAATCCAACACAGGAAAAACCATGCTGGAATTTCAGgaattaATGACAGTGTTTCAGCTGTTGCACTGGAACGGGACACTGAAGGCTTTTAGGGAGAGGAGATGTAGTCGTCAGgagGTGATCAGCTACTACTCTGAGAAACGGCTGGATGAGTGTATGCGTAGTCACATGGCTCTGGACTGGCTgcagagggagaggaagaggccAGGGCTGCTCTCACGGGAGCTGCAGCTGTCTCTCAGAGAGTTGGCCCATGCTCGGCAGGCTGGCCGTGAGCTCCGCTTCTACAAGGAAAAGAAGGAGATCCTCAGCCTGGCGCTCAGTCAGGCCTCCACTGAGGAACTGCAGGCCTACTGTGCGGAGGAAGAAAAAGAGTGCTGGAGGAAAGAAGAAGCTGCATTGGAGTATCTCACGTGTGGGGGCCACTGTGTGGAGGGTAGCATGGTGGACTCGTTAGAACATTGTGAGTTTTATTACCTGGAGAGTGAGAGTGACAAAGAGTCACTgggctgaagtgtgtgtgtgtttgtgtgtgtggggtgagtTTTGGGTGAAGGGAAGGTCCTTAGATTCACATTGAAGAAAAGAGCCTGTATGTTGTATATTTTCTACTCCTATGTAGAGTTCTTTTTCAGTGTACTGTAATGTGTCTGCAGCTAAATGAGCTCCTGTGTAAATCGGATTTATTTAGTAGTAAATGTGTTAGTAGTACATGTAGGATTTGAACTTCTGGAGAGCAGCTCCAGCTCTCTTATTGTTTGGACTGAGAATTTGGCTTGCATTGAGCAAAAATCATTTTGTATTGCCTTGGGATTTAGAAGGGAATGTAAATAAAGGCTGATACTTTTTGCTTCGGCCACAGGGTGCCGCCATATCCTGTGAATGGCTGGTCCCCAGAACTAGGGTATAAGATGTTTCTTCCCCAGATCTGTACAGGCCATTTTCCCAATAAactgaatgggaaaaaaaacagtaataatcaTGAAAGTTTTAAGTTAAACTCCTCTCTTTAATAGTGTTTTAACTGTATTCTGTCACTGTGTACTCTTAGATCTTTTGATAGTTAAGATTTCTTAGATTAATAAAGTGGTTCTACTTGAACCCTTTTCAGTAGGTA
>XM_034298906.1
ACAGCTAATTAGTTCAGCTCTTGACAAAGGTGGGCCAGCCACAGAAGAGGAGCTGTAGTGAGAGCTTAACAGGGCTCCACACACGGCTCTCAAGCCTGcagcagagaggaggagaagggtTCCCCTCACACTTTCCCAATCAGAGCTGGGGTTTGTAGAGAACCGTTGTTCCTTACCCCAGAGCATATGAGAGGGCTCACAGGCATAGCAAGAGTTACTGCTGGACATTTGGGACATGAGAGATGACTTCCACACCAGATTCAGATGATGACAGAGCCTTTAAAGACTCTCTCACACTGCTGTTGAGATAAGTGACAGGCCTAAGCTGGAGGTAAATCTTTTCTGTTTGAGCCATGACATCAGCTCTCTGTGGCACATCTCAAGTGGAGAGATTTACCAGAGGTCTGAAACCACAtaataaaaaagTGAATGTTGTTGGAATGCTGCATCAGTTCTGGGAGCAAAAACAGGTGAACGATGGCACAATCGAGACAGAGAACCTAGTAGTTTATGAATCCGTTCCCTCACCAGGACCTCCATTTATCTGCTATGTCACCTTACCAGGAGGGAGCTGCTTTGGCAACTACAAGTATTGCTACACAAAGGCAGAAGCCAGACGTGACGCAGCTCGTATTGCTCTGATGAACTCAACATTCAATGATTTGCCCTGTCGTCGTATCACTCCAGAATTCATAACCCGCAGCATAGAGGAGGCTGTCGCCACTACCAGTgagGTGATCAGCTACTACTCTGAGAAACGGCTGGATGAGTGTATGCGTAGTCACATGGCTCTGGACTGGCTgcagagggagaggaagaggccAGGGCTGCTCTCACGGGAGCTGCAGCTGTCTCTCAGAGAGTTGGCCCATGCTCGGCAGGCTGGCCGTGAGCTCCGCTTCTACAAGGAAAAGAAGGAGATCCTCAGCCTGGCGCTCAGTCAGGCCTCCACTGAGGAACTGCAGGCCTACTGTGCGGAGGAAGAAAAAGAGTGCTGGAGGAAAGAAGAAGCTGCATTGGAGTATCTCACGTGTGGGGGCCACTGTGTGGAGGGTAGCATGGTGGACTCGTTAGAACATTGTGAGTTTTATTACCTGGAGAGTGAGAGTGACAAAGAGTCACTgggctgaagtgtgtgtgtgtttgtgtgtgtggggtgagtTTTGGGTGAAGGGAAGGTCCTTAGATTCACATTGAAGAAAAGAGCCTGTATGTTGTATATTTTCTACTCCTATGTAGAGTTCTTTTTCAGTGTACTGTAATGTGTCTGCAGCTAAATGAGCTCCTGTGTAAATCGGATTTATTTAGTAGTAAATGTGTTAGTAGTACATGTAGGATTTGAACTTCTGGAGAGCAGCTCCAGCTCTCTTATTGTTTGGACTGAGAATTTGGCTTGCATTGAGCAAAAATCATTTTGTATTGCCTTGGGATTTAGAAGGGAATGTAAATAAAGGCTGATACTTTTTGCTTCGGCCACAGGGTGCCGCCATATCCTGTGAATGGCTGGTCCCCAGAACTAGGGTATAAGATGTTTCTTCCCCAGATCTGTACAGGCCATTTTCCCAATAAactgaatgggaaaaaaaacagtaataatcaTGAAAGTTTTAAGTTAAACTCCTCTCTTTAATAGTGTTTTAACTGTATTCTGTCACTGTGTACTCTTAGATCTTTTGATAGTTAAGATTTCTTAGATTAATAAAGTGGTTCTACTTGAACCCTTTTCAGTAGGTA

Function

symbol description
lix1 Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Orthologous to human LIX1 (limb and CNS expressed 1).

NR:

description
PREDICTED: protein limb expression 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939687.2 True 1905 mRNA 0.46 7 6443704 6452126
XM_026939688.2 False 1764 mRNA 0.46 6 6443704 6452123
XM_034298906.1 False 1734 mRNA 0.46 5 6443704 6452129

Neighbor

gene id symbol gene type direction distance location
rxrab LOC108255946,LOC108423686,LOC103046247,LOC107660328,LOC107672569,LOC107552637,LOC107740802,LOC107731035 coding downstream 115876 6281694 ~ 6327828 (-)
brd3b LOC108255802,LOC107665032,LOC107740804 coding downstream 176117 6250931 ~ 6267587 (-)
fam78aa fam78aa,LOC108255801,LOC108423592,LOC107740833,LOC107731022,LOC107552624 coding downstream 203892 6236120 ~ 6239812 (-)
LOC113542600 LOC108255798 coding downstream 213421 6218805 ~ 6230283 (-)
gpsm1a LOC108255912,LOC108423595,LOC107595532,LOC107665019 coding downstream 268069 6172304 ~ 6175635 (-)
zbtb26 zbtb26,LOC103133383,LOC106934410,LOC106934416,LOC106930504,LOC103152387 coding upstream 24240 6476369 ~ 6479116 (-)
krt1-c5 LOC108255341,LOC108423676,LOC107740828,LOC106585415,LOC105014123 coding upstream 36358 6488487 ~ 6492858 (-)
LOC113542264 LOC107549184 coding upstream 56301 6508430 ~ 6515609 (-)
LOC117595918 NA coding upstream 60305 6512434 ~ 6514926 (-)
LOC113537042 LOC108255977 coding upstream 82647 6534776 ~ 6537285 (-)
LOC117595904 NA non-coding downstream 55133 6383104 ~ 6388571 (-)
G350513 NA non-coding downstream 133254 6309132 ~ 6310450 (-)
LOC117595975 NA non-coding downstream 501872 5938466 ~ 5941832 (-)
G350114 NA non-coding downstream 712984 5730462 ~ 5730720 (-)
LOC117595899 NA non-coding downstream 733230 5707923 ~ 5710474 (-)
G350664 NA non-coding upstream 242726 6694855 ~ 6695063 (-)
G350714 NA non-coding upstream 290264 6742393 ~ 6742602 (-)
LOC113537000 NA non-coding upstream 450164 6902293 ~ 6914343 (-)
G350906 NA non-coding upstream 635585 7087714 ~ 7088036 (-)
G351033 NA non-coding upstream 748617 7200746 ~ 7201552 (-)
LOC113542569 NA other downstream 91332 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 322745 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 864723 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 920423 5362282 ~ 5523281 (-)
G349951 NA other downstream 1079422 5321513 ~ 5364282 (-)
G350867 NA other upstream 312785 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 1133343 7585472 ~ 7597962 (-)
card9 card9 other upstream 1150778 7602907 ~ 7607466 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 2101518 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 2118388 8570517 ~ 8586011 (-)

Expression


Co-expression Network