vamp8 (vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711)


Basic Information

Item Value
gene id vamp8
gene name vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2191585 ~ 2199551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939754.2
CCGTTTAGCGGAGGAATTCAGGCGGACGAGGAAGAGAAAACGCGGAGAAACCAGGAAGTTCGCGACGCGCTCTGGGTTTTTTGAGAAAGTGCTAAAAGTTTGACGGTTTGTAAACATTTAGCCGGTGGGAATCCGGTGTTTAATGTCGTGTTTTGCTGCAGTTTACTGAATCAGTCGTGGTGTTTGGTTTAGAAGATGGGAGTTGGAGATCCAAACAGTATGGAGCAGGGGGCGTCGGCTTCGGCGGAGGAAGTGGACCGGGTGAAGTCGCTGCAGTCTCAGGTGGATGGCGTGAAAGACATCATGACCCAGAACGTGGACCGAATCCTGGCACGCGGAGAACGACTCGATGATCTGATGGACAAATCTGAGGACCTGCAGGCCGGGGCGCAGAACTTCAAGCACACGTCGCAGAAGGTGGCACGCGCCTACTGGTGGAAGAACGTGAAGCTGATCATGGTGATAGTCGTGATTGTTGTCGTCATCCTGCTCATCATCGTGCTGTTGGCTACAGGAGTGATCCCGACTAGTGCCTCAGCGCCGCTGCCCCCGACAAGCAAACCACCAAATTAACACCTAGGAAATTAACAccttcacactcactcactcacacagacCTACTTTATACCGAAACCTGAAGGCACACACACTTACGTTAGTTCTTAAAAAAGTCCCATTCGGACACACCGCAGGATTTCATGCTGGTCCTGAACCAAAATATTCGCCGTGTCTACAATTTGGCGAAACAAAAGCGCAAACCTTGGTCCGAACTGGATATTGAGACACATTTATATCTCATACAGCTGTGAAATATCGTAGATCTGTCAGATCAGGGTTCGAACGAAATCCTGCAGGAGTGATTCTGCTTCGTAATTTTGATTTTACGCAGAAAACGAAGACGATGCGTCTTTTCTTTACACATTTAGCTCAATCAAAAACATCCGCCGTGATCACGCTTCACACGAAACTCCCAATGCTGCTTACGATGAAGCTCGTTAACATGCGCTTGTTTCCTACCCGCTTTTATTCGTTCACAACATTCGTTCGTTTCCTACAAAACAGCAATATTTCTTTACTTGAATAATCAAACACGAATCCATAGTGTTAGCACACAgtactgtctgtttttcttacaGAATTTCTTGAAACATTCCTAGAATTTATAGGAATATCTAGAAATGAAATCTGAATGCTGGAACTTCAACAGATTTATAAGATGTTACACACTGAAATATCTGGAATTTCACACAGATCACTGGAATTTAAGAAACTCACAAATTTGCATGTTGAAAATATCTGGAAACCTTAAATTAAAGATATTTATAAGTTACATAttgaaaatgttcagaaaattaACCATATTGTTACCAAGATGTTACCATATTTGCTCGAAGCTGTATAGCAAACATACCTGAAAAACCTAAATAATAGCTGGagattaaagatattttatattGAATTAACCCCAAATTAAGAGATTTTAATGTTTAGATGTGGAATTGAACAAATCCAGAAATTTGCCCTGAAATTATGCGATTTAAGGATATTTATTAGaagatatatattaaaaaatatccagAAATTCTAAGAAGATAAATGAAAATTGATtgaatttaaatactttttaactAAATTTGACTGATTAAAATCCAGAAATTAACCACTAATGTCGGAACTTGAAGTTATAATTAAgttgaaaataaattagtaataagttgaataataaaacacttaaaatttgaaattgaaaatatctgaaaatggatcttttttttttttttttttttatataagaaGTATACAATGAAAATATCTGACCTAATGAAGGACAATCTAATATTTACTGTTACAAATATCTGGAAATTAAGCCTGAGAGCTAGAAAGaagttattaaaatgaattcttATTAAAAATAGAGAGGAACTTACATATTGAAAATATCACTTAATGCTGGAAGGTAAGATACCTACAAGATGgtacatgttaataataattataaaataaccCTTAATTCTGAAATGTGTACGTTTTAAACATCGGAAGGATTTCATTTCATCTCTTTGCTGGAaattttcttggtgtttggtcacaacgCGATactttccacacacacttctcagacAACACAATTTTCTCTATATACTAGTgatacagtgagtgtgtgaaatttcCGGACGGGTTTGcccaagtgtttgtgtgtgtccgtgtgtgtgtttgtgtttttacatgatgaaaatgtttttttcgtAACTGTTTCTTTAAAGTTTGAAGGCCGAGTTATAGTTAAAATCAATACGAACAATAGCGCAAATGCACTTTGCTTCAATGTAGGTCTAAGATTTTGCTTTAACATTCCAGTCACTGCTGTAAAAGTCAATATTTCTCTGATTTTCACTGTTACGAAAGAAAAAAACCCGACTCTTTACAGTTCTTTAGTGGCCAGTTTTGAttccaaccttttttttttt

Function

symbol description
vamp8 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in SNARE complex assembly and mucus secretion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in mucin granule and plasma membrane. Is expressed in otic vesicle; periderm; pharynx; pronephric duct; and sensory system. Orthologous to human VAMP8 (vesicle associated membrane protein 8).

NR:

description
vesicle-associated membrane protein 8-like isoform X1

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006897 endocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08512 VAMP8; vesicle-associated membrane protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939754.2 True 2468 mRNA 0.37 3 2191585 2199551

Neighbor

gene id symbol gene type direction distance location
LOC113542514 NA coding downstream 13526 2169335 ~ 2178059 (-)
LOC113542577 NA coding downstream 25203 2164473 ~ 2166382 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding downstream 27665 2156986 ~ 2163920 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding downstream 223446 1951629 ~ 1968139 (-)
rad17 rad17 coding downstream 284012 1901159 ~ 1907573 (-)
ncaph ncaph,LOC107709847 coding upstream 2165 2201716 ~ 2209741 (-)
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding upstream 53430 2252981 ~ 2282993 (-)
ogfod2 ogfod2 coding upstream 157720 2357271 ~ 2363155 (-)
LOC113542614 LOC108255713 coding upstream 235773 2435324 ~ 2458405 (-)
LOC113542490 NA coding upstream 266021 2465572 ~ 2482183 (-)
G348180 NA non-coding downstream 9725 2111663 ~ 2181860 (-)
G348200 NA non-coding downstream 49483 2141616 ~ 2142102 (-)
G348147 NA non-coding downstream 157721 2033557 ~ 2033864 (-)
G348143 NA non-coding downstream 204538 1986183 ~ 1987047 (-)
G348103 NA non-coding downstream 248874 1805996 ~ 1942711 (-)
LOC117595926 NA non-coding upstream 42657 2242208 ~ 2242816 (-)
G348233 NA non-coding upstream 106574 2306125 ~ 2308604 (-)
G348264 NA non-coding upstream 201306 2400857 ~ 2401493 (-)
G348283 NA non-coding upstream 224164 2423715 ~ 2424331 (-)
G348309 NA non-coding upstream 345864 2545415 ~ 2546515 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 63940 1982054 ~ 2127645 (-)
G348145 NA other downstream 193115 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 362940 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 480677 1450335 ~ 1710908 (-)
LOC113542373 NA other downstream 661191 1505639 ~ 1530394 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 401983 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 574171 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 585126 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 611993 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 956491 3156042 ~ 3166254 (-)

Expression


Co-expression Network