sart3 (sart3)


Basic Information

Item Value
gene id sart3
gene name sart3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 4064265 ~ 4084764 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939800.2
TTGGGTTCGACTCCCGGCGCTGTTTTAACCGCCGCTCCACTGAGTTGAGTTATCACATCAGTGTTAACACTTTCTCTGGCAGAATGTTAGTGATTAATGACTATCCTACAGTATTCTCCCGTTCATAAAGAAGACATTTCATGACATAGgctcagaaaaaaacaagcgcaggtctgtttttttttatctgtagcTCATTGGATCAGGCTGTAGCTCGGGCACGCGCATCCTGTTACCAGGCAGATCCTCGCAAACATGGCGGCGACTGGGAACGAAGCTGAGACGCTGTTAGCTGATAtcaaggaggaggaggaggaagccgaggagatggagagagaaatggagtCGGGAGAGGAAGAGGCAATGGGCGTCGAGAATTCCGAAGATGAAGAGGACGACGACACGTCGGAGGACGAGCGGGAAAATGAAGCAGAAATCCAGCGCTTGGAGGAGCAGCTGTCGATCAATGCATTTGATTATAATTGCCATGTGGACCTGATCAAGCTGCTGAGGCAGGAAGGGAAGCTGTACAGACTGCGCAAGGCCAGGCAGAAGATGAGCGAACTCTTCCCTCTCACTGAAGAGATCTGGCTGGACTGGCTGAAGGACGAAATCGGCCTGATGGAGGGTGACGAGGCCGAGCGTGAGAAGATCTATGAGCTCTTTGAGAAAGCTGTAAAAGACTACATCTGTCCTGATATCTGGTTGGAGTATGCACAGTACTCTATAGGTGGCATGGGCGCTGAGGGAGGCATCGACCGCGTGCGCACCATCTTCGAGAGGGCTCTGACTGCTGTGGGTTTGCACATGACCAAAGGAGCTGCGCTCTGGGAGGCCTTCCGGGAGTTTGAGATCGCCATCCTCTCCACCCTGCAGCCTCCCCCTGGCAGTATCTCGAGTCCTGAgcaacaggagcagctgaacgTGCAGCTCGACAGAATCCACACTCTCTTCAGAAGGCAGCTTGCCATACCTCTAATGGATATGGAAAGCACATACACTGAGTACTCGGATTGGACGGACGAGGGGGTGCCGGAGACAGTCACGCAGCACTACAAGCGAGCTCTGCTGCAGCTGGAGAGTCGCAGGTCTTATGAGGAGGCTCTGTTGGTGTCGGAGCCGCCGAAGCTGGCGGAGTATCAGAGTTACATAGAGTACGAGATGAAGGAGGGAGACCCTGCTCGAGTTCAGATCATATTTGAGAGAGCGCTGGGGGAGAATTGTTTAGTTCCAGACCTTTGGGCCAAATACACTACCTATCTGGATCGCCAGTTGAAGATCAAAGAGCTGGTGTTGTCCTGTCATGAACGGGCAGTCCGGAACTGCCCCTGGACCATGGGCTTGTGGAAGAGCTACCTGTTGGCTCTGGAGAGACACCACGCAGAGCATCACATAATCTCTGATGTGTTCGAAAAGGCGCTGAATGCTGGCTTCATACAGGCCACCGATTATGTAGAGATCTGGCAGTCGTACCTGGATTACCTGAGGAGACGTGTCGATTTTAGCAAAGAGGGGAGCAGAGAGCTAGAGGAGCTGCGGGCAGCTTTCACACGCGCTCTCGACTACCTGAAGCAAGACGTGGAGGAACGGTTTACTGAGAGTGGTGATCTGTCCTGTACAATAATGCAAATCTGGGCCAGAATAGAGGCTTTGCACTGTAAGAATATGCAGAAAGCACGAGAACTGTGGGATAGCATCATGACAAAAGGGAATGCTAAGTACGCCAACATGTGGCTCGAGTACTACAATCTGGAGAGGTCGTACGGAGATGCTGCACATTGTAGGAAAGCTCTTCACCGAGCAGTGCAGTGCACGTCAGATTATCCAGAGCACGTGTGTGAAGTTCTTCTCACATTTGAGAGGGTTGAGGGTTCCCTGGAGGACTGGGATGCTGCTGTACAGAAGACCGAGTCTAGACTGAATCGAGTGAACGAGCAGAGAGCGAAGGCAGCAGAGAAAGAGGCCCTGCTAGTCCGGCAAGAAGAAGAGCGAGCCGAACAGCGTCGCAAAGCCAAGGCCgaaaagaaagcacagaaaaagagccagaaaacaaacagaacaggAGACAAGAGGAAGGCAGAAGACGTGGGTGAAGATGAATGGGGAGAGGAGACTGAGCGCAAGAGGCACAGAGGTGAGGAGGACGTCTCAGAGGAGCAGATGGAGACGGAAAGCGGGCTGCACGGGCGCCGTGCTCCTCCGCAACACAAAACAGAGACCCCAGCTGCCCGCAAAAACCAGCAGGTGGTGACAGAAGTAAAAAATACCCCGGCCAGAATGCCAGATGAACGCAGTGACTCAAACAGCGTGTTCGTCAGTAATTTAGCCTTCAATCTGGAAGACCCCGAGGGAAAAATGAAGGCTGCGTTTGGGAGCTGCGGCACCATCGTGCAGGTGCGACCAGTGTTTACTGCAAAGGGCGCCTTCAGAGGATACTGCTACGTGCAGTTTGAGGATGAGCTGGCCGCTCGGGAGGCACTGAAGCTGGACAGACAGGAAGTGGCTGGGCGGCCTATGTTTGTGTCTCCCTGCGTAGATAAGAGCAAAAACCCAGACTTTAAGGTCTTCAAGTACAACACATCGTTGGAGAAGCACAAAATATTCATCTCGGGGCTGCCTTTCACCTGCACTACAGACAAGCTGGAGGAGCTGTGTAAGGAGCACGGCACGGTCAAAGCCGTCCGCCTCGTCACCAACCGCTCCGGCAAACCCAAGggCCTGGCCTACGTGGAGTTTGAGAACGAGGCGCAGGCGTCTCAGGCCGTGTTAAAGATGGACAGGACGAAGCTGGAGAATCACATGCTCTCTGTGGCCATTAGTAATCCTCCAGCCAGGAAGACAGAATTCACACCAGCTCTGGGCGGCATGATGCCTCGCCAGGTTCAGGGCAGTCGTGGAAAAGGACGCACGCAGGTGTCTTTACTCCCTCGCTCTCTGCACCGTCAAAACACACCACAGGCGAAAACGGAGAACGGCACCGCAGCCAAACAGCAGGATGGCATGAGCGATGGAGTGCAAGCCGAAAACCCCGGAACAAAGCCCCTGTCCAACGAGGATTTTGCAAAGATGCTCCTGAaaaagtgaggggaaaaaaaaccgaACACAACCTGTTAACTTGCCTTGTGTCAGAAGCCATTCTGTGTCCTTAATGCGATAGAGAGGAAGAAAAGCAGTGCTTTACGTTCTTTTTCCTGTAAATACATGAACCCACCCAtgttctattaaaaaaaaaaaaaaggttttaacaGTATGTCCTT

Function

symbol description
sart3 Predicted to enable U6 snRNA binding activity and histone binding activity. Involved in spliceosomal snRNP assembly. Acts upstream of or within exocrine pancreas development; hematopoietic or lymphoid organ development; and spliceosomal complex assembly. Predicted to be located in Cajal body. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human SART3 (spliceosome associated factor 3, U4/U6 recycling protein).

NR:

description
PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0048538 thymus development biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K22611 SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939800.2 True 3257 mRNA 0.52 19 4064265 4084764

Neighbor

gene id symbol gene type direction distance location
LOC113542443 NA coding downstream 32078 4030433 ~ 4032187 (-)
LOC113542541 LOC108255813,LOC108255349 coding downstream 66849 3993746 ~ 3997416 (-)
LOC113542542 LOC108255316,LOC108255814,LOC108255815,LOC108262011 coding downstream 70581 3990907 ~ 3993684 (-)
wu:fa19b12 NA coding downstream 184504 3874882 ~ 3879761 (-)
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding downstream 390409 3664972 ~ 3673856 (-)
tmem119a tmem119 coding upstream 9716 4094480 ~ 4100412 (-)
selplg NA coding upstream 17212 4101976 ~ 4107185 (-)
coro1ca coro1c,LOC106584990,LOC106937262 coding upstream 22589 4107353 ~ 4154563 (-)
ssh1a ssh1,ssh1a,LOC102780175 coding upstream 77644 4162408 ~ 4221742 (-)
svopa svop,svopa,LOC107696058 coding upstream 162795 4247559 ~ 4277617 (-)
G349333 NA non-coding downstream 342246 3718239 ~ 3722019 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding downstream 366741 3695478 ~ 3697524 (-)
LOC117595902 LOC108255364 non-coding downstream 378959 3682580 ~ 3685306 (-)
G348909 NA non-coding downstream 447684 3615071 ~ 3616581 (-)
LOC117595903 NA non-coding downstream 456889 3561666 ~ 3607376 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding upstream 379410 4464174 ~ 4512012 (-)
G349655 NA non-coding upstream 618629 4703393 ~ 4704166 (-)
G349642 NA non-coding upstream 692266 4777030 ~ 4786024 (-)
G349805 NA non-coding upstream 921512 5006276 ~ 5006649 (-)
G349812 NA non-coding upstream 933342 5018106 ~ 5018675 (-)
trpm6 LOC108255945,LOC108438703 other downstream 184317 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 676535 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 898011 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 1099376 2811544 ~ 2964889 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other downstream 1278369 2784677 ~ 2785896 (-)
G349584 ung other upstream 454519 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 1163884 5248648 ~ 5327552 (-)
G349951 NA other upstream 1236749 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 1277518 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 1491024 5575788 ~ 5578981 (-)

Expression


Co-expression Network