slc6a4b (slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447)


Basic Information

Item Value
gene id slc6a4b
gene name slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1535595 ~ 1558524 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939849.2
CGTTCATGAACTACAGAGAGGTTTATCGAGCTGAAcctttaccatgattgttcatttcatgctcccagctgtctgtgcacttgaccttttatggagtttttgtgggtgtcactatgCAAATGAGCTTTGAATGGgtgatcaacacacacacacacacacCAGCATGCACCATCACGAGTTGGCGGCGAGCGCGAACCCCGGTCTGGTTCCGGTTCCGGTGATCCTGCAGACGGAGTCGCGCGACAAATGGGGCAAAAAAGTCGACTTCCTGCTGTCGGTGATCGGCTTTGCTGTGGATCTGGGGAACGTGTGGCGATTTCCTTACATCTGCTACCAAAACGGCGGAGgAGCCTTCCTCATCCCCTACACCCTCATGGCTATATTTGGGGGTGTACCACTCTTCTACATGGAGCTGGCTCTGGGTCAGTTCCACCGCACAGGTGCCATCTCCATATGGAAACACATTTGCCCAATATTCAAAGGCATCGGTTTCGCCATCTGCATCATCGCGCTGTACGTCTCGTTCTACTACAACACCATCATTGCGTGGGCGCTGTTCTACTTCTACTCATCGTTCAGCAGCACTCTGCCATGGACGAACTGCGACAATGCATGGAACACGGAAAACTGCACCAACTACTTTGGCAAGGACAATGTGACGTGGACTAACTACTCACGTTCACCAGCCGAGGAGTTTTACACGAGGAACGTGTTGGAGCTGCACGAGTCAGAGGGTTTGGAGAACGTGGGTGTGATCCGCTGGCAGCTGATGCTGTGTCTGTTCCTGATCTTCACCATCGTCTACTTCAGCCTATGGAAAGGAGTCAAAACATCGggcaaggtggttTGGGTCACAGCCACTCTTCCCTACGTGGTGTTACTGATTTTGTTAATTCGAGGTGCAACGTTACCTGGAGCGTGGAGGGGCGTTGTCTTCTACCTGCAGCCCAAATGGGAGAAACTTAAGGATACAactgttTGGGTGGACGCAGCAgctcagatcttcttctcccTCGGCCCGGGGTTTGGCGTTCTGCTTGCTCTATCCAGCTACAACCCGTTCAACAACAACTGCTACAGAGACGCCATTGTGACGAGTTTGGTAAACTGCCTGACCAGCTTCATGTctggttttgtgatttttaccgTTCTGGGCTACATGGCTGAGCAGAGACATGTTAACGTGGAAGATGTAGCCAGAAACAAGGGCCCAAGTCTTCTGTTCATCACTTACCCAGAAGCCATTGCCAACATGATGGGCTCCACGTTTTTCGCCATCATCTTCTTTGCGATGATGATCACACTGGGATTGGACAGCACGtttGGAGGGCTGGAAGCCATCATCACTGCCATCATGGATGAGTACCCAGACTTTCTGTCCCACAGGAGAGAGGTATTCGTGCTGGGCCTCGTGGCTGTGTGCTTTTTGGGCTCTCTGAGCACTCTTACTAAAgGTGGTGCGTATGTCGTTAAACTACTGGAAGAGTTTGGAGTCGGATCCTCCATAATAGCCATCGTGTTTTTGGAAGCCACTGCAGTCTCCTGGTTTTATGGCATCAACAGATTCAGCAACGACGTCAAAGCCATGTTGGGATACACACCCGGAATCTTCTGGAGGTTTTGTTGGGTAGCCATCAGCCCGACTTTTCTAGCgTACATCATCATCAGCTCTCTGCTGAATCCGGCCCCGCTGATGATGTTCGATTACAAGTTCCCCGACTGGAGCATCACGGTGGGTTACATCATTGGATTCTCGTCTTTCATCTGGATCCCCGTCTACATGGTGTATAAGCTGGTGTGGACGCCCGGCTCGCTCAAACAGCGTCTGGCTGTTTGCCTGCGGCCCGAACGAACTCTGCCTGACATCCACACAGACACGCTGGGTTTGACTCCGGTACCTTAAAACGGCCCGAAACACACACCAGACACCAAACagagtcaaaacacacacactcactgggacaaacacacatacactgacacactcacacacacacatgattaaaGAAGCAATAAGTAGCATCTTTTGGTCCACTTTCCAGGTGCAATACTCGCCATGCTGCTCACACTCAGACACGACAATTACGACATTACAGTATCGTTCaatttaaaattctgttttttcctctagATTATAATACATTACACCACTATTCAGCAGATTTCTTGATTACAGTTAGATATGCGATGATATTAACTGCCTAATTCATCAGGGTATgtaattatcacaatattgtttttttttagaaatagaaAGGCAGCAAACTAAATTTTCAGATTGGCctctttgaaaagaaaaaaaggatattTCTGATGCTACTTTCAAATCTGTCCAAATTTAAAGGTTGCGGGATAAACAGCAATGcttttgaattctggattctgattggtcagaaggagaaggtgttgattcattttctatcaatataatttctatagtaacagt

Function

symbol description
slc6a4b Predicted to enable serotonin binding activity and serotonin:sodium symporter activity. Predicted to be involved in serotonin uptake and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in several diseases, including alcohol use disorder; alexithymia; anxiety disorder (multiple); heart disease (multiple); and mental depression (multiple). Orthologous to human SLC6A4 (solute carrier family 6 member 4).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0006837 serotonin transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05037 SLC6A4, SERT; solute carrier family 6 (neurotransmitter transporter, serotonin) member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939849.2 True 2446 mRNA 0.48 15 1535595 1558524

Neighbor

gene id symbol gene type direction distance location
LOC113528310 NA coding downstream 93403 1433006 ~ 1442192 (-)
LOC113524989 NA coding downstream 104114 1425099 ~ 1431481 (-)
LOC113524983 NA coding downstream 114889 1350316 ~ 1420706 (-)
LOC113528146 NA coding downstream 219208 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 237787 1293874 ~ 1297808 (-)
fam151b fam151b coding upstream 328128 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 333744 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 342635 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 393105 1951629 ~ 1968139 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding upstream 598462 2156986 ~ 2163920 (-)
G347916 LOC108255589,LOC108255412 non-coding downstream 38724 1496410 ~ 1496871 (-)
G347959 NA non-coding downstream 71114 1069718 ~ 1464481 (-)
G348012 NA non-coding downstream 71963 1408961 ~ 1463632 (-)
G348011 NA non-coding downstream 132764 1401856 ~ 1402831 (-)
LOC113524984 NA non-coding downstream 195754 1338808 ~ 1339841 (-)
LOC117595968 NA non-coding upstream 24196 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 39946 1598470 ~ 1598542 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding upstream 73667 1632191 ~ 1638134 (-)
G348067 NA non-coding upstream 134619 1693143 ~ 1795534 (-)
G348079 NA non-coding upstream 175382 1733906 ~ 1859612 (-)
LOC113542373 NA other downstream 5201 1505639 ~ 1530394 (-)
LOC113524988 NA other downstream 166133 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 256728 1268309 ~ 1278867 (-)
G347960 NA other downstream 456456 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 610928 856780 ~ 924667 (-)
G348096 LOC108255538 other upstream 269374 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 423530 1982054 ~ 2127645 (-)
G348145 NA other upstream 437378 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 621015 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 1043010 2601534 ~ 2664482 (-)

Expression


Co-expression Network