sftpbb (LOC108255529)


Basic Information

Item Value
gene id sftpbb
gene name LOC108255529
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 4807450 ~ 4815249 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939878.2
ATGAGCTCTTCTCAGCAGTGCGCGTGTTGTGCGGAGTGCAGGCCCTACACGGAGCTTTTAAAGGGTCCAGGTGCAGCTCTTCTGCAGCTCTGCACAGCTCTCATTCCCTCTCACACTGCTCTCATTCCCTCTCACACTGCTCTCATCCTCACACTGCTCTCATCCTCACACTGCTCTCATCCTCCCAGCCCGGACTGCATGATGTCTGCAGCACCTGCTGTCTGCCTCTGCATCCTCGCCTGCGTCCTGGCCTCCGGACATGCAGGAATCATCGGGCCTTACCCTCCACCCCTGAAGACCTCCAGCCTTTCAATGACCAAAAACATGTGCTCTGACTGTACCAGGATCATAGAGCTTTTTTCAGATATGCTCTCCCATCCAGAAACACAGGACCTGATCCAAGAGACTCTCAATGAGCTTTGTCATCGTCTTCCAAGTGGCCCGGTTATTAACGAGTGTTTGGATTTTGTGAAAAAGTATCTGCCAATAGTCATACAAGGATTCACTGCATTCACTGCACATAAGGAGGGAGAGATATGCATGGTGCTCGGACTGTGTGCTGTTCAGCCAGAACAAAAAGCTCCAGAGTTGCTCAATGTTGGTTTGCAGGAAGCTGGATTAGTCCGAGTGCAGCCTTCGACAGGAACCGGTCACGAGTTACAAGTCAGCCCGCAGTGCACCTTCTGCCTTTTCCTCATCAAAAAACTGGAAGACATGTTGCCAAAAGAGAGAACCGAAGAGACTGTGGTGAAGCTTCTGGAGAAAATCTGTGACCACTTGCCTGATCACTACAAAGAGGAGTGCGACAATTTCCTGGAAAAGTACGGCAAGCAGGTCATTGACTTCCTGCTCAGTTCTGCCACTCCGCACACTATATGCACGCTGCTGCATTTGTGTCTCGGACAGGACACACCTGCTATGGTGCCGTCTCTGCCATCAGACTGTAAAACCTGTAAAATCCTGATGATCCTGACTCAGGTTCATCTGGGCCAGAATGCTACTGAGACTCAGATGACCTCGTTGCTCTGGAAGACATGCCACTTTCACCCAAATGCCCTTCCAGGGTGTGAGCCGTTTATCCAGAGTCATGTCACGGCACTAGTGAACATTCTGAGCAAACGAGAAGAAGCTGTAAACGCATGCCAGACATTCTTCTGTGTGGGACATGAATAACACGATGGACCTTCAAGCAAAGAACCAGTAGATTTTTTATTTGCTCCTCTATTTGCTATCTTGTGATTTACGATATTAAACTCAATTAGGCTAAAGTGAATATTAGCCTAACAAGA

Function

NR:

description
prosaposin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939878.2 True 1289 mRNA 0.49 11 4807450 4815249

Neighbor

gene id symbol gene type direction distance location
c24h2orf68 c22h2orf68,cunh2orf68 coding downstream 10455 4789868 ~ 4796995 (-)
selenom selenom,LOC103043669,LOC108438490 coding downstream 78357 4713147 ~ 4729093 (-)
alkbh2 alkbh2,LOC107552593,LOC107746816 coding downstream 271971 4530121 ~ 4535479 (-)
eif2b1 eif2b1,LOC107728130 coding downstream 332568 4467458 ~ 4474882 (-)
LOC113542247 lrrc43 coding downstream 377679 4402268 ~ 4429771 (-)
ank1a LOC108255531,LOC108438466,LOC107722748,LOC107702961 coding upstream 10714 4825963 ~ 4930853 (-)
ebf2 LOC108255422,LOC108438472,LOC105027009,LOC100704273,LOC102791852 coding upstream 132703 4947952 ~ 4974098 (-)
dguok LOC108256054,LOC108438482 coding upstream 184774 5000023 ~ 5004375 (-)
mob1a LOC108255806,LOC107087288,LOC107739988,LOC101073635,LOC102234237,LOC107675956,LOC101160416,LOC107702973,LOC103470272 coding upstream 191953 5007202 ~ 5016415 (-)
kmt5ab LOC108256031 coding upstream 268808 5084057 ~ 5101494 (-)
G349642 NA non-coding downstream 21426 4777030 ~ 4786024 (-)
G349655 NA non-coding downstream 103284 4703393 ~ 4704166 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding downstream 295438 4464174 ~ 4512012 (-)
G349333 NA non-coding downstream 1085431 3718239 ~ 3722019 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding downstream 1109926 3695478 ~ 3697524 (-)
G349805 NA non-coding upstream 191027 5006276 ~ 5006649 (-)
G349812 NA non-coding upstream 202857 5018106 ~ 5018675 (-)
LOC117595908 NA non-coding upstream 240093 5055342 ~ 5060388 (-)
G349823 NA non-coding upstream 250528 5065777 ~ 5066161 (-)
G349830 NA non-coding upstream 287479 5102728 ~ 5102953 (-)
G349584 ung other downstream 267619 4539283 ~ 4539831 (-)
carnmt1 carnmt1 other downstream 603346 3882016 ~ 4204104 (-)
trpm6 LOC108255945,LOC108438703 other downstream 927502 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 1419720 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 1641196 3156042 ~ 3166254 (-)
hip1rb hip1r,LOC108255864 other upstream 433399 5248648 ~ 5327552 (-)
G349951 NA other upstream 506264 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 547033 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 760539 5575788 ~ 5578981 (-)
pappab LOC108255326,LOC108423596 other upstream 1241732 6056981 ~ 6120959 (-)

Expression


Co-expression Network