rad17 (rad17)


Basic Information

Item Value
gene id rad17
gene name rad17
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1901159 ~ 1907573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939931.2
GACTTGCAGTGAAAAAAGTACCTGCGGAGAGGCGGACCGTTGGAACTTTAAAGGGATACAGAGCTCTTAGCTATATTTCAGCTAATGTCCTACATGAGCGTAAAAGCATTAGGGCTTTTATATAGCGTCAGAAATGACTGAGtgtcaGACTGATTAATCCGGCTGTGTGAATGGGAAGAGCTGATAATGTCAAAACTTTCTCTAGGAGGAAAGACGTCCTCTGGTAAATTAAGCAGCTGGGTACAACCatcctttgttgattttttcGGCGGCTCGGGGTTGAACACCCTCCCCTCGACAAAGGGACTTTCCGGAGAAAGCAAGTCCAAAGCACGATCCTCGAGTGCGATGTCGGCTGGAAAGAAGCCGaagaagagaaagggagagCCTCAGATTTCTAAACTCGAGCCTGCTGTCTTCTCGAGCAGACGAGGATCAGAGGAGAACCAGGATGAACCCTGGGTGGATGTTCATGCACCTCAGACACAAgCCGAGCTGGCAGTCCACAAGAAGAAAGTTGAGGAAGTCGAGAGTTGGCTGAGGGTTCATTTGGACTTAAAGAGCACTAATAAGGCGGCGCTTGTTCTGTTAATGACCGGCCCGTCCGGCTGCGGAAAGACAGCCACCGTTCACGTCCTGGCTAAAGATGCGTGCTGTCACATCCAGGAGTGGACGAACCCGACCACCGCGGAGTACAGGACGGACGACTCCTTCAGGGAGAGCTTCGATCCAGCCTCCAGGTTTAACAGTTtccacagcagctcacagacggCAGCTTTCCAGGAGTTTCTGCTCCGAGCGAACAAATACAACCGGCTGCAGATGAGCGGAGACGACGGGGCTCAGGAAAGGAAGATCATCCTCGTAGAGGATTTTCCAAATCAGTTCTACAGACAGCCAGGATGCTTGCATGACATCCTCAGgCGTTTCGTGCGGACAGGGAGGTTCCCGCTGGTCTTTATCGTGTCTGACAGCCTGAGCGGAGACACCAGTTCCAGACTCCTCTTTCCTAAAGACATACAGGAGGAGCTGAGCATCCACAACGTCAGTTTTAACCCCGTAGCCCCTACCAGCATGATGAAGGTGCTGAATAGGATTGCGACTGTCGAAGCGAGCAAGAGTGCTGGGAGGATCTCCGTGCCTGATAAGGCAGCACTGGAGCAGCTGTGCTCCGGAAGTTCAGGTGACATTCGGAGTGCCATCAACAGCCTGCAGTTCTCCTCTTTCACTGACTTCTCTCTGGAAAAAAGCCTCTGGGCTTCTAAGAAGGGAAAATCATCCACATCTGCAGCAAAACCCTCAGCGAGACCCAAAGGCAGGGGTCGGTCCACTAAATCCACCGAGGTGCTGGAGGAGAGTCCTGCTATTGGAGGAAAAGACGCATCCCTCTTCCTCTTCAGAGCGCTCGGAAAAATCCTCTACTGCAAGCGAGAAAGCTATGAAGCTGGTGATATTCCTAAGCTACCAGCGCATCTTTCAGAGCATCAGAGGGATAAACTGCTGGTTGACCCcgagCTTGTTATTGAGCGCTCTCACATGTCAGGCGAGTTCTTTAACCTCTACCTGCACCAGAACTACATGGACTTTTTCTCAGACGTGGAGGACGTGGCGCGGGCCAGCGAGTACCTCTCAGACGCTGACTTCCTGACAGCTGAATGGACTTCCAGGTCCACCATGTTGGAGTATGGATCTTCAGTAGCCACTAGAGGGCTCATCCACTCTAACAGCGCCCGCGCTCAGGCTGCTCACCAGTCGTCAGTCGGCTTTAAGCCACTTCACAAGCCCCACTGGCTGCATATTAACAAGACGTACCGAGAGAATTATCTGACGGCTCAGTCGCTCTTCATCAGCTTCTGTCTGACACCTGTAAGCCTTGTGACTGAGCTAGTGCCTTACCTGGCCAAGCTCAGCAACCCTATGAGGAatcaagCTCAGATAACCTTCATCCAAGATATCGGCCATCTGTCGCTCAGGAGATTTCCTGGCAGATTAAAACTTGAAGCACTTGGTGATAAAGACCCTGGCCTGCTGGACCTGGACAGTGATCATGAAGAGACAGGAACCCAGAGCACTGAGCCTGGCACTCAGACCACTCTGCCAGGAGATACCACTGCTGTGCCCACCCTCCCAAACAGCCAGGAGCCAGGGGGAGACCTCCCCGCTAGCCAGCCTCAGCCAACCACTGCCGAGGCCTTGCTGGACGAGGAGGACCTTCTAATTGAGGAGTATGACAGTGACTGACAAATCACACGCTCCTGTTTCCTATATATCCTATGCCATTGTTGCCTTGAGGAGACCCGGTTCTTACGTTAATGTTTCTGCATCACTGTGTTTTTGCATATGGTTTTATAATGTGAATAATGAGCAGGTTTAATATTTATTCGGTTCAACACAAACAGTAGACTGTCtttgtgtcgtgtgtgtgtacatgttggTGTTATGGTGTTCCTATCGGACTCGGTCATAGGGACCTACAGAATGTGAGTGTTTATAtatgatctttaaaaaaaaaaaaaaaaagtgtttggaCATTT

Function

symbol description
rad17 Predicted to enable chromatin binding activity. Predicted to be involved in DNA damage checkpoint signaling; DNA repair; and mitotic DNA replication checkpoint signaling. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of Rad17 RFC-like complex. Orthologous to human RAD17 (RAD17 checkpoint clamp loader component).

NR:

description
cell cycle checkpoint protein RAD17

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K06662 HRAD17, RAD24; cell cycle checkpoint protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939931.2 True 2534 mRNA 0.51 18 1901159 1907573

Neighbor

gene id symbol gene type direction distance location
ccdc125 ccdc125 coding downstream 1095 1892268 ~ 1900064 (-)
fam151b fam151b coding downstream 9033 1886652 ~ 1892126 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding downstream 342635 1535595 ~ 1558524 (-)
LOC113528310 NA coding downstream 458967 1433006 ~ 1442192 (-)
LOC113524989 NA coding downstream 469678 1425099 ~ 1431481 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 44056 1951629 ~ 1968139 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding upstream 249413 2156986 ~ 2163920 (-)
LOC113542577 NA coding upstream 256900 2164473 ~ 2166382 (-)
LOC113542514 NA coding upstream 261762 2169335 ~ 2178059 (-)
vamp8 vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711 coding upstream 284012 2191585 ~ 2199551 (-)
G348094 NA non-coding downstream 25403 1794830 ~ 1875756 (-)
G348092 NA non-coding downstream 30013 1790117 ~ 1871146 (-)
G348088 LOC108255559 non-coding downstream 35085 1785025 ~ 1866074 (-)
G347905 LOC108255614,LOC108255436,LOC108255578,LOC108255576,LOC108255573 non-coding downstream 134230 1763211 ~ 1766929 (-)
G347900 LOC108255575,LOC108255576,LOC108255573,LOC108255614 non-coding downstream 158859 1734913 ~ 1742300 (-)
G348143 NA non-coding upstream 78610 1986183 ~ 1987047 (-)
G348147 NA non-coding upstream 125984 2033557 ~ 2033864 (-)
G348180 NA non-coding upstream 204090 2111663 ~ 2181860 (-)
G348200 NA non-coding upstream 234043 2141616 ~ 2142102 (-)
LOC117595926 NA non-coding upstream 334635 2242208 ~ 2242816 (-)
G348096 LOC108255538 other downstream 72514 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 190251 1450335 ~ 1710908 (-)
LOC113542373 NA other downstream 370765 1505639 ~ 1530394 (-)
LOC113524988 NA other downstream 531697 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 622292 1268309 ~ 1278867 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 74481 1982054 ~ 2127645 (-)
G348145 NA other upstream 88329 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 271966 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 693961 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 866149 2773722 ~ 2831679 (-)

Expression


Co-expression Network