LOC113542443


Basic Information

Item Value
gene id LOC113542443
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 4030433 ~ 4032187 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939996.2
AATTCCTTTAAAGGGGAGTGGAAGAGCGGAATCTGCACTATCCTTTCTGCAAACTCTTTAGCAGTTCACTTTCAATTTTGGAGGCTTATTAAGTACTTCTCAAGGACTGGCTATATTTGTCTGAGACTTGCCAAGATGTCCTTCAATACTACAGACTTTGACTACAATGCTCTGTTGCTTGACCAGAAAAACCAGAATAAGTACTTAAATGCAATCAGAATGCTATACATCAGTGGATATCTCATCATCTGCACCCTTGGCCTGGTTCTCAACCTTTTAGTCATTATAGCAGGCAGCTCTTTCCACCGCAATTCTGACACTGCTAAGTGGGTACTGGCATTAGCCGTGACCCATCTGATCTGCTCAGCATTCCTGCCATTGCAGATCCTCTACAGCTGGTACCACTTCAACTGGCACTATGGAACACCTCTGTGCAAGCTCTCGTCCACCGTATTTTATGCCAGCTTGTTCTCCACAGCAGGTATACTGACTCTCTGGAGTATCACTGACAGGACTGGGAGAAACAAATGCAAAGGAAGGCATTGCACTACATTCCAGCATTCATCAGTAGTCCTGATCATGATTCTGTGCTCCTGGACATTTGCAGTGGTCCTAAGCATCCCATCTTTGTACTCCCGAGAGCTACGATTCACAGCCCTGGGGGAACAGTGCATTGATGACTATGATTTTAGTGATGAGATAATgacaaaagaaggaaaaagaaacctAACCATTGTAGTTAGTTACAGGTTCCTACTTGGGATTTTGATCCCTGGATTTCTGATGGGTATCTGTCGCAGCTGTCAGCATTATGACGCGGAAAGGAACTTGAAGCGAATCACATGTTTGATAAAAGTGGCTTACTTTGTTTGCTGGACTCCACTGCTGATCATGGGGTTCCTACAGGCCGTCACAAACAGTTTTGATGATTCCTCATATGGATTACCTGTAGCTACTGTGCTGGCTGCAGCTCACTGCTGTGTCAACCCAGTGATCTATCTTTTGGTGagtcacaacattaaaatgcagTGGATGAAACAAGCACAAGAATTGGACCAATCAACCAACAGTTATACTTAATGCCTAGAGGACTACCGACACTATATGCTTTcagttattttctgttattcgatattcatttattctctaTTCATGTTTATGCATAcacagtaaaaaatatatacagtatataccttATTTGTTTTATCAGTATGAACCTTATAATGAGGAAGGTTTactatttaattcattattttatcatgAATGAAGCTGACATGAATGTAGCTTTGGATGGTAAACATGTCGGActgactttaaataaaatgtaatcatgtatcattttacacttttatatcattttgcactttcttttatgtatgtattttttttaaaataatacatt

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939996.2 True 1402 mRNA 0.40 2 4030433 4032187

Neighbor

gene id symbol gene type direction distance location
LOC113542541 LOC108255813,LOC108255349 coding downstream 33017 3993746 ~ 3997416 (-)
LOC113542542 LOC108255316,LOC108255814,LOC108255815,LOC108262011 coding downstream 36749 3990907 ~ 3993684 (-)
wu:fa19b12 NA coding downstream 150672 3874882 ~ 3879761 (-)
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding downstream 356577 3664972 ~ 3673856 (-)
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding downstream 461658 3552519 ~ 3568775 (-)
sart3 sart3 coding upstream 32078 4064265 ~ 4084764 (-)
tmem119a tmem119 coding upstream 62293 4094480 ~ 4100412 (-)
selplg NA coding upstream 69789 4101976 ~ 4107185 (-)
coro1ca coro1c,LOC106584990,LOC106937262 coding upstream 75166 4107353 ~ 4154563 (-)
ssh1a ssh1,ssh1a,LOC102780175 coding upstream 130221 4162408 ~ 4221742 (-)
G349333 NA non-coding downstream 308414 3718239 ~ 3722019 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding downstream 332909 3695478 ~ 3697524 (-)
LOC117595902 LOC108255364 non-coding downstream 345127 3682580 ~ 3685306 (-)
G348909 NA non-coding downstream 413852 3615071 ~ 3616581 (-)
LOC117595903 NA non-coding downstream 423057 3561666 ~ 3607376 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding upstream 431987 4464174 ~ 4512012 (-)
G349655 NA non-coding upstream 671206 4703393 ~ 4704166 (-)
G349642 NA non-coding upstream 744843 4777030 ~ 4786024 (-)
G349805 NA non-coding upstream 974089 5006276 ~ 5006649 (-)
G349812 NA non-coding upstream 985919 5018106 ~ 5018675 (-)
trpm6 LOC108255945,LOC108438703 other downstream 150485 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 642703 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 864179 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 1065544 2811544 ~ 2964889 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other downstream 1244537 2784677 ~ 2785896 (-)
G349584 ung other upstream 507096 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 1216461 5248648 ~ 5327552 (-)
G349951 NA other upstream 1289326 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 1330095 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 1543601 5575788 ~ 5578981 (-)

Expression


Co-expression Network