tm2d2 (tm2d2)


Basic Information

Item Value
gene id tm2d2
gene name tm2d2
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3156042 ~ 3166254 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940048.2
AACTCAGGAGGCGGGACTTGTCGAAATACGGGTAGCGCTGCTGGGGCTTGCGCGGTTAGCATGAGAGCTAGCTTGCTGGAATGACGGATTTgtaaagagagacacagaaactTCGCCATGTCTCACATTTCTGTGAATTATGTGTTGTTAGGCGGACAGTTTTTCTTGCTCGTCTCGGTGCTGCTTTTGCAATGCCTGGAAGGGATTCACTCTGAAAACTCCACCACACCCGGAAGCAGagagacaacaacaacaacaacaacaaccacaacaacgacaacaacaacaacaactacaacaacaacaacaacagctgcATCTACTACAGTCACCGCTCTGTTCACACAGCCAGCTGAAGAAAATGTCACATACAATAACATCACGACAGCAGAGCCGTTAAATCACACGGAGCAGTATGAATACAGCCCTCCATCTCCAGTGGTCCTCTGTCGGTACCTTCCTGAGGAGTTTATATACTGCAGGGATCCTGTCGATCACGATGGAAACCTCACAGCCTTCCAGGAGCTGGGACACGGCTGCGTCAAGattGGAAATCAAGGTCAGGTGTACAAAGATGTGAATCACACACAAGTGCTGTGCACAGCGTTGGACGGCATCGAGTGTGCCGGGCCTCGAGAATTCCTCCGAGGGAACGAACCGTGCATCAAATACACGGGTCACTACTTCATCACCACGCTCCTGTACTCGTTCTTCCTGGGCTGCTTCGGCGTGGACCGCTTCTGTCTGGGCCACACAGGCACCGCCGTCGGAAAGCTCCTCACCCTCGGAGGCCTGGGAATCTGGTGGTTTGTGGATCTCATCCTCCTCATAACCGGAGGACTGACGCCCAGCGACGGCAGCAACTGGTGCACGTTCTACTGATCGCAGACGTTTCTACCCGCAAGCGCGCATCTGTTGATCCCTTTATCATGGTACTGTATTAAGAACGACATATAGGCACGTGTCGTAAATGCAGCCTAGTTTGTGGcgatattataaaatatatatatataataattattattataataattattataaatatataatgttggAATTACTGGCTGCAGTTCTAGAGGAATATGACagattcttttaaaatattcattaaatgtgCTGAATGAAATGTGTAAGATACTGCTTTgttttgtacagtgtaaagATTTGAAGTAGTTTTTTTGTTGTAGATAAAATGTCATTCACTGTGTACATGTTTGAATAAAGGCACAAACGTTAGTAcattacataagtattcacccctttgaACTTTCCCACATTTCCCACATACTTATATAAGTAAATGGGATTATATGTAATGAATcgaaagggggtgaatacttatgcaaggcaccgaaaaaaaaaaaaaaagttctgttcCGCATTTTGACCTTTACAACAAATTCATACATGTTCAATCAAGACAGTGCAGCTGTTTGGTCCATTTCAGTGCTTGGCCTTTGTAAAGAAATCATCTactcttctttttattttccttccacGTACAATCTGCCGTTGTCACACTTCATGTGAATTGTTTGATAAAATGCCAAGATTTGCATAGTAAAGCTTACAGCGATGAAAATGTCAGTCAAATCCGCTTTTATCATATTGCAGATCAAGTACCAACAAAGCACTGGAGATGCAGCGCACGAAAAACATTCGCTCATCCTTCCTGAGAAATACTCAAAAcatgcaatgaaaaaaaaaaatcacttcctTTCAACAAAAAccctttgattttatttcaatataatataatgttattttaatgggGATTTTTTGAAAGCTTGGCACTCCACGTCCCTGCTTTCTAGCATGTCAAGAGCCCAGTAATTCAATAAATTATAACTCTTTTGTTTA
>XR_003404311.2
AAACTCAGGAGGCGGGACTTGTCGAAATACGGGTAGCGCTGCTGGGGCTTGCGCGGTTAGCATGAGAGCTAGCTTGCTGGAATGACGGATTTgtaaagagagacacagaaactTCGCCATGTCTCACATTTCTGTGAATTATGTGTTGTTAGGCGGACAGTTTTTCTTGCTCGTCTCGGTGCTGCTTTTGCAATGCCTGGAAGGGATTCACTCTGAAAACTCCACCACACCCGGAAGCAGagagacaacaacaacaacaacaacaaccacaacaacgacaacaacaacaacaactacaacaacaacaacaacagctgcATCTACTACAGTCACCGCTCTGTTCACACAGCCAGCTGAAGAAAATGTCACATACAATAACATCACGACAGCAGAGCCGTTAAATCACACGGAGCAGTATGAATACAGCCCTCCATCTCCAGTGGTCCTCTGTCGGTACCTTCCTGAGGAGTTTATATACTGCAGGGATCCTGTCGATCACGATGGAAACCTCACAGCCTTCCAGGAGCTGGGACACGGCTGCGTCAAGattGGAAATCAAGGTCAGGTGTACAAAGATGTGAATCACACACAAGTGCTGTGCACAGCGTTGGACGGCATCGAGTGTGCCGGGCCTCGAGAATTCCTCCGAGGGAACGAACCGTGCATCAAATACACGGGTCACTACTTCATCACCACGCTCCTGTACTCGTTCTTCCTGGGCTGCTTCGGCGTGGACCGCTTCTGTCTGGGCCACACAGGCACCGCCGTCGGAAAGCTCCTCACCCTCGGAGGCCTGGGAATCTGGTGGTTTGTGGATCTCATCCTCCTCATAACCGGAGGACTGACGCCCAGCGACGGCAGCAACTGGTGCACGTTCTACTGATCGCAGACGTTTCTACCCGCAAGCGCGCATCTGTTGATCCCTTTATCATGGAGTCTGCGAGGAACTGCCGTATCCGGTCCGAGGGAATTGCAAATGATATTCCTGCCGTGaccttcagtgtgtttatgccGATGACGTCTCCATCCTTGAGACACAAAACGGACAGCATAATAGCCAAATAGCatcaaatgaatgaacaatCTGGCCTTGGGAAACATAAAGGCCGCCCTGGACCACATGTTTGAGAAGTGCAATCCAAATTACATTGCTACAGAAAGTTCTTTCCATTTTAatcagaaaagcagaaatagAACAACCCATTACCTTGAGCGAGAGCGTTTTAAATGGATGGACGCATCACCCGAAATGCAACAGTatgaaaaatgtgattcattaaTGTTGCATAATGATACAGTTGTTCTGGCCTTTGCCTGGTTTTTCAGACAGCCGTGTCATTTGAACTAACGTTCCACTGCTGCTTTATACTAATAAATTACTCCATGTGTGAGGACATTTTAAAGCC

Function

symbol description
tm2d2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TM2D2 (TM2 domain containing 2).

NR:

description
LOW QUALITY PROTEIN: TM2 domain-containing protein 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940048.2 True 1860 mRNA 0.42 4 3160110 3166253
XR_003404311.2 False 1406 misc_RNA 0.49 5 3156042 3166254

Neighbor

gene id symbol gene type direction distance location
hdr NA coding downstream 354488 2793455 ~ 2801554 (-)
LOC113542230 LOC108255680 coding downstream 364468 2786249 ~ 2791574 (-)
LOC113542232 LOC108255682,LOC108434266,LOC108417841,LOC108415785,LOC107715185,LOC107581013,LOC107745493 coding downstream 370105 2785439 ~ 2785937 (-)
zgc:153409 LOC106958509,LOC106963510,LOC107723971,LOC107690788,LOC107671222 coding downstream 370968 2784561 ~ 2785074 (-)
loxl2b loxl2b,LOC108255679,LOC108434263,LOC107673422,LOC107721556 coding downstream 382639 2746147 ~ 2773403 (-)
tbx3b tbx2a,LOC108255409 coding upstream 2024 3168278 ~ 3200058 (-)
araf araf,LOC108255753 coding upstream 62850 3229104 ~ 3242841 (-)
klf9 klf9 coding upstream 140914 3307168 ~ 3312856 (-)
cemip2 tmem2 coding upstream 344861 3511115 ~ 3546480 (-)
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding upstream 386265 3552519 ~ 3568775 (-)
G348640 NA non-coding downstream 5626 3150001 ~ 3150416 (-)
G348296 NA non-coding downstream 561719 2549097 ~ 2594323 (-)
G348311 NA non-coding downstream 607032 2548123 ~ 2549010 (-)
G348310 NA non-coding downstream 608002 2546572 ~ 2548040 (-)
G348309 NA non-coding downstream 609527 2545415 ~ 2546515 (-)
G348661 NA non-coding upstream 32428 3198682 ~ 3198896 (-)
G348663 NA non-coding upstream 37837 3204091 ~ 3205284 (-)
G348662 NA non-coding upstream 39251 3205505 ~ 3207834 (-)
G348669 NA non-coding upstream 57046 3223300 ~ 3223499 (-)
G348678 NA non-coding upstream 89856 3256110 ~ 3259052 (-)
unc5db unc5d,LOC108434269 other downstream 191153 2811544 ~ 2964889 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other downstream 324363 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other downstream 370146 2784677 ~ 2785896 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other downstream 491560 2601534 ~ 2664482 (-)
LOC113542580 NA other downstream 924475 2179539 ~ 2231567 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other upstream 153531 3319785 ~ 3387730 (-)
trpm6 LOC108255945,LOC108438703 other upstream 665831 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 715762 3882016 ~ 4204104 (-)
G349584 ung other upstream 1373029 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 2082394 5248648 ~ 5327552 (-)

Expression


Co-expression Network