LOC113542489 (LOC108255707)


Basic Information

Item Value
gene id LOC113542489
gene name LOC108255707
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5524146 ~ 5532315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940063.2
ATTAGGCGGCTGTAGGAGTCGCATCGAGACGCGTTAGCGTTCACACTATGTAGTATGGCCACAGGCGTCCCAGATTACTTCTACACGGGTATTTTGCGCCGTCCGCTTGTGATCCGATTACCGGAGACAGATGTTAATAGCCTACCTTATCTGGAAAAAGCGGtccaattaattttatttttgtcacgCGATTATCTCTTGACCATGAGAACTGGGATTCGCCTTCAGTTGGCACATCTTATTGTGCTCTCTTCCAGGGCTCTAATTTCGGACACCAGGAACCACGAGATTTTTTGTTTTCGCACGAAGTCCGAACTTGGACGCACTCAGTGTAGTTTTCTTCGAAGACCATCTGCGGTAGCATCTGTTCTTCTTTACTGGACCATTTGGGCAGCAGAGCATCGTGTTGAAGAGTGTTCTATAAGCGCTGAGCCAGCTTTGATTCAAAACTATATGTCAGTATGTCATGAACGAGGCATCTGGGATCTACATAAAACATCATCTCTGCGCCTCAATATAACTCTGCTTTTGGAGCCTGACAGTCCATGTGACTTTCGACCAATTGCCCATGGCAACTTCAGGTGGCATAAGTACTTAGACACAGGCTATCAGGTGGGTTCTGAGACCAGAATACGCCAGAAGCGCGCTTGGATCTTACCCGGGACCCTGTGGTGCGGCCGCGGAAGCCGCGCTGGTGACTACGAGCAGCTGGGTATGTTTGAGCGTGTCGACAGATGCTGCCGAGAGCATGATCACTGCGACAGCATCATTCGCCCCTTCACTGTGAACTTCGGCGTGTTTAACCCAACTCTCTTCACCATTTCACACTGCGACTGTGACTACAGGTTTAAGCAGTGCCTTCTAGACATTAATGACACAGTCTCAAATATGGTGGGCTATACATTCTTCAATATCCTTAAACTCCACTGCTTTGAGCTTATCCAGAAGAGAAGGTGCACCAAGATCAACTGGATTGGAATGTGCACATCAGATAAGGTTGCCCCTTATGCAATCCTCAAACATCCAACAATATATAATGCCACGACTTCAAACGCTGGTATTCCTGAGCCACCAGTTTGTCAGGGAAAACCTTCAGCTAccaccaaacaaaaaaagatcaaaCTTAAACAAAGAAAGCAATCAACATCTCAAAAGAGCTATGTTCCAGGAGCTTCTGCAGCAGGGCATACATTTCTCTTGAGTGAAATTATTGGGCAGCCTTATAGTAAACCAAAGACAATTTCACCAACGTCTACCACAGGACAGCCAAATTGCCTGATGAACTTTAACACAACATTGTTCCATCAGAAATCTAAACTTATAAATCAAAGAACTCCATTCTCAACAGCAGCAAGTACTGTTCATGTGCACACAACAACATCTATAGCACCTACAAAACAAATGGCTACTCCATCAAAGAAAATTACaccaaacaaaagcaaaaacattacTCAATGGCCCATTACCACAGTACAAACCAAGCTCATCAAAAGATAtaaacctctaacatccaagcTGAATGTTGGCCCACATGGAGGTGATCATTTCCAGCCAAAACAACAAAGGGGAAAGGATGGCAAGCAGGACAGTGCATCTTTACATGGCACTGTATCTCCAAACTTCATAACATTATCTCTGGCTAGCAAACTTCCAAGGACTAACAAATTCTTTGAAAGCATGtcacaaacaaaaaaggagacAAATTTTCCAAGTAGAAAAAAGGCATCCAATGCAGTATCAAGCAGAAGTCACCAACTGAACACAAGCAAattagaaatgaaacaaaaaacagctgAAGTCAGCAAACTACCTAAGATTTCGAATAACACCAACTCTGCAACTTATAAATCAACAGCAATATGTGATGTAACCAGCCATTTGGATGACTGCAAATATAGGATCCATCCCATGGAGAAGTTATATGGACATCATAACACAGAGACAACTACAATCTACCATTGCGATTGCATACACAGGTTGACTGAACATTTAAAGCAACTGGAGAGCATTGCTTTACTGGAGAAACTTCTATGGAAATTTGTGTCCATGTCCTGCATTGAAATACCAAATACCAAGGAATGCAGCAATGATACAAGGTGTTCTACCATCCTATACACGGCAACAGAATTAGAATCTTCACTGATCAAACTGGAAGGTCAGGTTACagtaaaaaatagaaaaatacctACAAATAAAAGAGGCTCCAATCAACTTTACAAACGTTGTCTTAGGATTTTACGTCCTAGAAGCCCAAAACATGTAAAGCATGGTGCTTAACTAGTGCCAACTGGAAACGACTGAgtggaaatatttaaaatcagtattcttatgtgtaaatttctttttaatttcatattataCTCATCAGAGGAACCCAGGCTATTAAGCCTGGGTTCCTCTgatgaatataaatacaaatggaatattgtgtgaaaagatggatctcaaaatcatacagtcattgttggaaagggtt

Function

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940063.2 True 2476 mRNA 0.42 7 5524146 5532315

Neighbor

gene id symbol gene type direction distance location
LOC117595987 NA coding downstream 290329 5232083 ~ 5233817 (-)
kmt5ab LOC108256031 coding downstream 422652 5084057 ~ 5101494 (-)
mob1a LOC108255806,LOC107087288,LOC107739988,LOC101073635,LOC102234237,LOC107675956,LOC101160416,LOC107702973,LOC103470272 coding downstream 507731 5007202 ~ 5016415 (-)
dguok LOC108256054,LOC108438482 coding downstream 519771 5000023 ~ 5004375 (-)
ebf2 LOC108255422,LOC108438472,LOC105027009,LOC100704273,LOC102791852 coding downstream 550048 4947952 ~ 4974098 (-)
cntrl cntrl coding upstream 259095 5791410 ~ 5838534 (-)
c5 c5 coding upstream 308186 5840501 ~ 5865005 (-)
prdm12b prdm12b,prdm12,LOC108255448,LOC108423597,LOC103042983,LOC107688643,LOC107731029,LOC107665021 coding upstream 333523 5865838 ~ 5870388 (-)
surf4l surf4l,LOC100304967,LOC108423697,LOC107595501,LOC107740812,LOC107688631,LOC103043297,LOC107665048 coding upstream 396836 5929151 ~ 5938345 (-)
ciz1b LOC108256061 coding upstream 410987 5943302 ~ 5953387 (-)
G349960 NA non-coding downstream 5855 5517872 ~ 5518291 (-)
G349959 NA non-coding downstream 9337 5511680 ~ 5514809 (-)
G349949 NA non-coding downstream 249071 5264852 ~ 5275075 (-)
G349844 NA non-coding downstream 384320 5139594 ~ 5139826 (-)
G349843 NA non-coding downstream 384929 5138944 ~ 5139217 (-)
G350057 NA non-coding upstream 109570 5641885 ~ 5642417 (-)
G350058 NA non-coding upstream 110126 5642441 ~ 5645072 (-)
G350061 NA non-coding upstream 127785 5660100 ~ 5660315 (-)
G350090 NA non-coding upstream 158046 5690361 ~ 5690769 (-)
LOC117595899 NA non-coding upstream 175608 5707923 ~ 5710474 (-)
LOC113542328 hectd4 other downstream 865 5362282 ~ 5523281 (-)
G349951 NA other downstream 159864 5321513 ~ 5364282 (-)
hip1rb hip1r,LOC108255864 other downstream 196594 5248648 ~ 5327552 (-)
G349584 ung other downstream 984315 4539283 ~ 4539831 (-)
carnmt1 carnmt1 other downstream 1320042 3882016 ~ 4204104 (-)
LOC117595919 NA other upstream 43473 5575788 ~ 5578981 (-)
pappab LOC108255326,LOC108423596 other upstream 524666 6056981 ~ 6120959 (-)
LOC113542569 NA other upstream 814348 6346663 ~ 6352372 (-)
G350867 NA other upstream 1232599 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 2053157 7585472 ~ 7597962 (-)

Expression


Co-expression Network