LOC113542514


Basic Information

Item Value
gene id LOC113542514
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2169335 ~ 2178059 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940098.2
TCAGAGGACTGGGAGAGAGTACAGAGAGAAGAGCTTAAGGCAAAGAAAGGACAGAAATCCGGATCAGAGCTGCTGGCTGTCTTTCAGACATCCTTTAGAAGAACCTGTCAAgacaagaacacaaacacagagacaaacaaGGACAAAGTAACATGgagaaaggagaaagcCGGGTGCAGCAGCTTCAGGAGGATGTGGAGGAGGTTCGGGTCATCATGCAGGACAACATCGAAAAGGCCAGAGAGCGCGAGGGAAAACTAGAGGAATTGGACGAGAGAGCTGAATCGATGCTTAAGAGTaGCACACAGTTTCGGAAGTCAAcaaaaagagtgagaaaaactGTGGAAATTGAGAATACATTGTTGCCGTGTAAGAACAGGAAGGTGATCGCGGCCATCGCTGGAGTAGTTGTTCTggtcatcatcgtcatcatcgtcatcatcgtcgCATCACAAGGCCAGAGTCAGAACTGAGAGAATAGAGACTCTGGTTAAAAAGCCAGAGAAGAAGAAGTGATGGGCGTAACAACTATTTATGCTACTCAggagtgggttttttttttgttctgtgttaAAATTTGTATTCAGATGGTACATGTAAACACTTTCTGCTGCTTCAGTCtccattttttatattgtttgtaaggctttgatgtgtttatacttttatataaagatgtgtgtatctgttgaggtgaactgcacaaactgtaacTACATACTGGGGTAAGAATGAAATTTTTTTGGACATCTACAGACCATGTAAATGTCTGTTTTGCCTTAATACAGGATATTTAATACTTACAGAATACAATAATGTGGATAAATTGACTATAGGTGCATGGTCAAGGAAAATGGAGGAATATGGATCTTGtgtggaaaaggaaaaatatgttaaatattacCTCTGATTTGCCTCTGGAGTCATTAGAGATTTCAGTATTCAGTGCCtacttctgcacttgtgacgCACACTCCttgctgtttgtgtttactCTTCTATATCTACAAGAGTACTGGTAATTTTTTGAGTCTGCTTCCTCTCGAGGTTTTTTCCCTCATgtcgtctcggggagtttttcctcacctatgtcacctctggcttgtgcaTTACGGATTTACATTTGGATTACTGTTTtgtgattatactgtatattgttacacaaatacaaataaaattgatatatatatgtaaaaaaaactaaacattaaCAGCAGAACCATGGCTGAAGGACACCAGGGGTTTCTCTGGGTTCAGGGTTCTCACTCATGAACTTCCAGtcatccggagtctatcccgggaacactgcaCATGAGGTAGGAATACGTAccgaatgggatgccagtccatgcacacacactcatactcacacactcatccacacctAGAGGTGATTCATCATAGTCAATCCACCTCCTGGCCTGTTTCTGAGAAGTGAAAGGAAAACTGAGAACCTGGTGGAAACCCCTGCAgatacagggagaacatgcacacacacacacacacacacacacacacacagtaacctgagatCGACCCCGGAACCCTGGAGACCTGAGGAGGAAATGTAGCCTTGTTATGTTTGGTGCTGATGGGACTCTATGATTGTGGTCAAACCAGCCGCAGTAGAAAATACAGACTTTTTACAGTAAACTCCAGGTGTTTGGGGAAAGAAGCTGCTGCACATCTGTTTTAGTCACTTAAAAAATGTTACTTCCTCACTTTCtta
>XM_026940204.2
GAGAATACGACAGCACAGGATtaggaaagagaaggaaaaaaatcaaaaccaatTCGATTATGCTAAGGGCCTGCTGGTGGAGAAGGAAAGTAGCAAGTGACTGTGACTTTTCAGGTGAAGGCCACTTCAAGGCAGTCGGATGATGAGTTGCATCGGGTTTACTACCTACGCTCTGTCAACCTGTGACGTACACAGGCACGCAACCACGATGTAAAAAAAAACGGTTAatttaaagaacaaacaaagCTCTGAGCTCAGAGGACTGGGAGAGAGTACAGAGAGAAGAGCTTAAGGGAAACAAAGGACAGAAATCAAGATCAGAGCTGCTGGCTGTCTTTCAGACATCCTTTAGAAGAACCTGTCAAgacaagaacacaaacacagagacaaacaaGGATCGATATGgagaaaggagaaagcCGGGTGCAGCAGCTTCAGGAGGGTGTGGAGGAGGTTCGGGTCATCATGGAGGACAACATCACCCAGGCCAGAGAGCGCGAGGGCAAACTAGAGGAATTGGATGAGAGAGCTGGATTGCTGTCTAAGAGCAGCCAACGGTTTCAAAGGTCAACAGGAAGAGTGAGACAACAGATGGAAACTGAGAACGCAAGGGTGCCATTTAATAATTGGAAGAGGTTCGCGACCATCATTGGAGTAGTTCTGACCGTCATTGTCATCGTCGGCGTCATCATATGGTATAGACTGCGTTAGAACAGCTAGTATAAAGACTCTGGTTAAATAGCCAAAAAgccagagaagaagaagaaaaagaagaagaaaaagaggatgTGATGGGTGGCAGCTATTTAAGCCACtcaggagtgtttttttttgttctgtgttaaaatttgcatttat
>XM_034298933.1
CTCTGAGCTCAGAGGACTGGGAGAGAGTACAGAGAGAAGAGCTTAAGGGAAACAAAGGACAGAAATCAAGATCAGAGCTGCTGGCTGTCTTTCAGACATCCTTTAGAAGAACCTGTCAAgacaagaacacaaacacagagacaaacaaGGATCGATATGgagaaaggagaaagcCGGGTGCAGCAGCTTCAGGAGGATGTGGAGGAGGTTCGGGTCATCATGCAGGACAACATCGAAAAGGCCAGAGAGCGCGAGGGAAAACTAGAGGAATTGGACGAGAGAGCTGAATCGATGCTTAAGAGTaGCACACAGTTTCGGAAGTCAAcaaaaagagtgagaaaaactGTGGAAATTGAGAATACATTGTTGCCGTGTAAGAACAGGAAGGTGATCGCGGCCATCGCTGGAGTAGTTGTTCTggtcatcatcgtcatcatcgtcatcatcgtcgCATCACAAGGCCAGAGTCAGAACTGAGAGAATAGAGACTCTGGTTAAAAAGCCAGAGAAGAAGAAGTGATGGGCGTAACAACTATTTATGCTACTCAggagtgggttttttttttgttctgtgttaAAATTTGTATTCAGATGGTACATGTAAACACTTTCTGCTGCTTCAGTCtccattttttatattgtttgtaaggctttgatgtgtttatacttttatataaagatgtgtgtatctgttgaggtgaactgcacaaactgtaacTACATACTGGGGTAAGAATGAAATTTTTTTGGACATCTACAGACCATGTAAATGTCTGTTTTGCCTTAATACAGGATATTTAATACTTACAGAATACAATAATGTGGATAAATTGACTATAGGTGCATGGTCAAGGAAAATGGAGGAATATGGATCTTGtgtggaaaaggaaaaatatgttaaatattacCTCTGATTTGCCTCTGGAGTCATTAGAGATTTCAGTATTCAGTGCCtacttctgcacttgtgacgCACACTCCttgctgtttgtgtttactCTTCTATATCTACAAGAGTACTGGTAATTTTTTGAGTCTGCTTCCTCTCGAGGTTTTTTCCCTCATgtcgtctcggggagtttttcctcacctatgtcacctctggcttgtgcaTTACGGATTTACATTTGGATTACTGTTTtgtgattatactgtatattgttacacaaatacaaataaaattgatatatatatgtaaaaaaaactaaacattaaCAGCAGAACCATGGCTGAAGGACACCAGGGGTTTCTCTGGGTTCAGGGTTCTCACTCATGAACTTCCAGtcatccggagtctatcccgggaacactgcaCATGAGGTAGGAATACGTAccgaatgggatgccagtccatgcacacacactcatactcacacactcatccacacctAGAGGTGATTCATCATAGTCAATCCACCTCCTGGCCTGTTTCTGAGAAGTGAAAGGAAAACTGAGAACCTGGTGGAAACCCCTGCAgatacagggagaacatgcacacacacacacacacacacacacacacacagtaacctgagatCGACCCCGGAACCCTGGAGACCTGAGGAGGAAATGTAGCCTTGTTATGTTTGGTGCTGATGGGACTCTATGATTGTGGTCAAACCAGCCGCAGTAGAAAATACAGACTTTTTACAGTAAACTCCAGGTGTTTGGGGAAAGAAGCTGCTGCACATCTGTTTTAGTCACTTAAAAAATGTTACTTCCTCACTTTCtta

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940098.2 False 1729 mRNA 0.42 3 2169335 2172941
XM_026940204.2 False 858 mRNA 0.45 3 2175537 2178059
XM_034298933.1 True 1733 mRNA 0.42 3 2169335 2177813

Neighbor

gene id symbol gene type direction distance location
LOC113542577 NA coding downstream 2953 2164473 ~ 2166382 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding downstream 5415 2156986 ~ 2163920 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding downstream 201196 1951629 ~ 1968139 (-)
rad17 rad17 coding downstream 261762 1901159 ~ 1907573 (-)
ccdc125 ccdc125 coding downstream 269271 1892268 ~ 1900064 (-)
vamp8 vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711 coding upstream 13526 2191585 ~ 2199551 (-)
ncaph ncaph,LOC107709847 coding upstream 23657 2201716 ~ 2209741 (-)
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding upstream 74922 2252981 ~ 2282993 (-)
ogfod2 ogfod2 coding upstream 179212 2357271 ~ 2363155 (-)
LOC113542614 LOC108255713 coding upstream 257265 2435324 ~ 2458405 (-)
G348200 NA non-coding downstream 27233 2141616 ~ 2142102 (-)
G348147 NA non-coding downstream 135471 2033557 ~ 2033864 (-)
G348143 NA non-coding downstream 182288 1986183 ~ 1987047 (-)
G348103 NA non-coding downstream 226624 1805996 ~ 1942711 (-)
G348094 NA non-coding downstream 293579 1794830 ~ 1875756 (-)
LOC117595926 NA non-coding upstream 64149 2242208 ~ 2242816 (-)
G348233 NA non-coding upstream 128066 2306125 ~ 2308604 (-)
G348264 NA non-coding upstream 222798 2400857 ~ 2401493 (-)
G348283 NA non-coding upstream 245656 2423715 ~ 2424331 (-)
G348309 NA non-coding upstream 367356 2545415 ~ 2546515 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 41690 1982054 ~ 2127645 (-)
G348145 NA other downstream 170865 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 340690 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 458427 1450335 ~ 1710908 (-)
LOC113542373 NA other downstream 638941 1505639 ~ 1530394 (-)
LOC113542580 NA other upstream 1480 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 423475 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 595663 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 606618 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 633485 2811544 ~ 2964889 (-)

Expression


Co-expression Network