abhd17b (abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759)


Basic Information

Item Value
gene id abhd17b
gene name abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3552519 ~ 3568775 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940108.2
GTCAATCAGGTGACGCAGACATCCGGTATTTCTGAAGAAAATAAGAAACAGGAGCGAGCGGGAGCGGAGCGGTGTCTCTGCGGTCGGTGCTGGAGCTTCTCTCGGTCGCTCAGTGGACGGAAAACCGcgcagttttttgttttttatttacactgggCTGCTTTTCAGGTTTATAAGCTTATCCACTCGGACCACATGTTGAGGATATCTGTGCAGCTCGGCAGGGCGGAGGAAGGTCTGGAAAGGTTACCgaggcggcggcggcggcgcaTCTCCGTGTCCGGAGCGGAGGAGTGAAGAACCGGAGAGAACCTCGCGATACGGTACCCCGCGATACGGTACCCCGCGATACGATACCCGCCTCACGATATCCTTAATATCGATAAATCACTCCATAAACCAGTGCCATCAGAGGGAGATTTTCACTCATAGCAGGAAGAGGAATATTTTGTGGGCAGAATGAATCACCTGTCGCTAAGCGAGCTGTGCTGCCTGTTCTGCTGCCCGCCGTGCCCAAGCAGGATCGCGTCGAAGCTGGCGTTCCTGCCTCCGGAGCCGACGTACACGCTGCTGAGCGACGAAAGCGGCACCCGCTGGACCCTGCACCTGTCCGAGCGCGCCGACTGGCAGTACTCGTCGCGCGAGAAGGACTCCATCGAGTGCTTCATGACGCGCACGGTGCGTGGCAACCGCATCGCCTGCATGTTCGTCCGCTGCTCGCCGAGCGCCCGCTACACGCTGCTGTTCTCGCACGGGAACGCCGTCGACCTCGGACAGATGAGCAGCTTCTACGTGGGGCTCGGCTCGCGCATCAACTGCAACATCTTCTCCTACGACTACTCGGGCTACGGCGCCAGCTCGGGAAAGCCGTCCGAGAAGAACCTGTACGCTGACGTTGACGCAGCATGGCATGCCCTCCGAACCAGGTACGGTATAAGACCAGAGAACGTGATCGTGTACGGACAGAGTATTGGGACGGTGCCGTCTGTGGATCTGGCCGCCCGTTACGAGAGCGCCGCCGTCATCCTGCACTCTCCGCTCACCTCGGGCATGCGCGTGGCCTTCCCCGACACCAAGAAGACGTACTGCTTCGACGCCTTCCCCAACATTGACAAGATCTCGAAAGTGACGTCGCCGGTGCTGGTGATCCACGGCACGGAGGACGAGGTGATCGACTTCTCGCACGGCCTGGCTCTGTACGAGCGCTGTCAGAGGCCCGTGGAGCCGCTGTGGGTGGAGGGCGCCGGGCACAACGACGTCGAGCTCTACGGCCAGTACCTCGAGAGACTCAAGCAGTTCGTCAGCCACGAGCTCGTCAACTTGTAGGACGATGACGAGCAAAcggacaggaaaaaaaaaaaa

Function

symbol description
abhd17b Predicted to enable palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation and regulation of postsynapse organization. Predicted to be active in endosome membrane and plasma membrane. Orthologous to human ABHD17B (abhydrolase domain containing 17B, depalmitoylase).

NR:

description
protein ABHD17B-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01076 ABHD17; abhydrolase domain-containing protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940108.2 True 1362 mRNA 0.59 4 3552519 3568775

Neighbor

gene id symbol gene type direction distance location
cemip2 tmem2 coding downstream 6039 3511115 ~ 3546480 (-)
klf9 klf9 coding downstream 239663 3307168 ~ 3312856 (-)
araf araf,LOC108255753 coding downstream 309678 3229104 ~ 3242841 (-)
tbx3b tbx2a,LOC108255409 coding downstream 352461 3168278 ~ 3200058 (-)
hdr NA coding downstream 750965 2793455 ~ 2801554 (-)
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding upstream 96197 3664972 ~ 3673856 (-)
wu:fa19b12 NA coding upstream 306107 3874882 ~ 3879761 (-)
LOC113542542 LOC108255316,LOC108255814,LOC108255815,LOC108262011 coding upstream 422132 3990907 ~ 3993684 (-)
LOC113542541 LOC108255813,LOC108255349 coding upstream 424971 3993746 ~ 3997416 (-)
LOC113542443 NA coding upstream 461658 4030433 ~ 4032187 (-)
G348906 NA non-coding downstream 847 3550577 ~ 3551672 (-)
G348695 NA non-coding downstream 236575 3315374 ~ 3315944 (-)
G348681 NA non-coding downstream 287697 3262269 ~ 3264822 (-)
G348678 NA non-coding downstream 293467 3256110 ~ 3259052 (-)
G348669 NA non-coding downstream 329020 3223300 ~ 3223499 (-)
G348909 NA non-coding upstream 46296 3615071 ~ 3616581 (-)
LOC117595902 LOC108255364 non-coding upstream 113805 3682580 ~ 3685306 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding upstream 126703 3695478 ~ 3697524 (-)
G349333 NA non-coding upstream 149464 3718239 ~ 3722019 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding upstream 895399 4464174 ~ 4512012 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 164789 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 386265 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 587630 2811544 ~ 2964889 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other downstream 720840 2773722 ~ 2831679 (-)
trpm6 LOC108255945,LOC108438703 other upstream 263310 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 313241 3882016 ~ 4204104 (-)
G349584 ung other upstream 970508 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 1679873 5248648 ~ 5327552 (-)
G349951 NA other upstream 1752738 5321513 ~ 5364282 (-)

Expression


Co-expression Network