c5 (c5)


Basic Information

Item Value
gene id c5
gene name c5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5840501 ~ 5865005 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940113.2
CTTTCACTAAGTGGATCTAAGACAGCACTATGACGGGCATTTTATTTCTGCTCTGCATTATACATGTGCTATCAGTGACTGAAGCTCAGGAGAGAACGTACCTCATCACGGCACCCAGACTTCTGCGAGTTGATGCGTCAGAGACTGTAGTGGTGCAGTTGTTTGACTATGACCAAGAAACCACAGTGAATCTTTACCTTAAAGACAATCTGGCCTCTGAAGGCAGAACTTATGCATCTCAGACTCTCAACCTCAACGCCAAAAATAATTACCAAGCTGCAGCTACTCTACGGATTTTCTCAAACATTGAAAAAGAGGTCACTCATCTCCACCTGCAGGCCATATCTAGTTCCTTCACCAAGGACGTAAGAATCCCAGTCTTTCGTGACAATGGTTTTCTCTTTATCCAGACTGATAAACCACTATACACACCCGAGCAGCAAGTTGAGGTGCGAGTGTACTCTTTGAACGAGGAGCTGAGAAAGACAAGTAGACCTGTTTTTCTCACATTCAAGGACCCAGATGGCATCAAAGTGGAAGTTATTGAGATGAATGACATCATTGGTGTGAAACCATTGCTTCCACCATTCAAAATACCCTTGAAACCTAAGTTTGGGGTCTGGAAAATCGAGGCAACTTATGCTACTAACTTCACTACAactgctgtggctgaattcgaGGTCAAAGAATATGTATTACCCAGCATCTCAGTCCGCATCCAGCCTGAAGCAAACTATGTCAGCACAGCAAACTTTGAAGCCTTCAAACTGAAGATATTGGCCAAATATGTCAGTGGGAAACCAGTCAGCTCATCAGATGTCTACATAAGGTTCGGATACATCGAAAATCATGATGTGGTCATGATTCCATCAACATTAAGATATTATAAGATGTATGATGGTGAAGTGGAGGTTGTGTTAAACATCAAGCGGGCTCTGTCCAGGCTAGATTCTGGGCCTCAGGATCTGTGGGAAATGAACAACCATTTCCTCCGTGTGGCTGTTTTGCTAAAAGAGTCTACTGGTGGTATCTCCCAGGAGGCAGTTATATCCAATGTGAAGTTTGTTCATTCTCCGTTTACCCTGAGTCTGATTGCGACTCCTCCTTACATCAAGCCATCTTTACCATACAACATCAGAgTTTTGGTGAAGGATCCACTGGGTGAATCAGTGAGAGGTGTGCCAGTAAAAGCAAGAGCAATAGtaactaacaataataatgaacagGAAGAGCTCAAATTTCAGGGACATCAAAATGAAATCACACAGACATCCAAAAATGATGGTGTTGCATATTTTGTTTGCAATATTCCACATAATGCTGAAAGAGCTGAATTTACTTTTGAGACAGATGATCATAAATATCCATCAGTGAGCCAGGCTCAACTTAAACTCAGCACCGTGACCTACAAGTCTCTCAATCACCGCTATCTGTATATCAATTTACCTTCCCATGCCTCAGATTTTGAGGTAGACGACTATGCCAATATCAACATCAACTTTTACTATCGTGACTATCTTCCACTGAAGACCTTCAGTTACCAGATCATTTCAAAGGGGAAAGTGGTAAAGTTTGCCACAGTGCAGCGGGTAACTGATAATGTCCAGAGCATCAACTTTAAGGTGACGTCTAACATGGTGCCATCTGCCCGCCTGCTAGTCTATTACATCCTTTCTGGAGAGCAGAGAGCTGAATTGGTTGCAGACTCTGTGTGGTTCAGTGTCAAGGCCAAATGTGTCAATAATTTAGAGGTGAACCTGGCAGCTCGAGGTAGGGACTACAAACCTAAAGACAAGCTTACAATGTCAGTAAAGACTAAGAGTGCAAATGAAAAGTCCCTGGTGGCACTGTCAGCTGTAGACACGGCCCTGTACAACCTCAGAGCCAATGATAAAGACCCACTAAACAAGGTACTGCAGCAATTTGAGCACAGTGACCTGGgctgtggaggaggaggaggccgAAATAATGCTGACGTCTTCAGCCGTACTGGACTGACATTTCTTACAAATGCAAATGTTGAGGCCTTCGATACAGATGATACCTGCACAGCTGTGGTCAGACCCAAACGCTCCACTCTTTCAGTCACGGAGATGCAAGAATATGccaataaatacaattattataAACCATGCTGCCTGAAGGGAATGAACACCAGCCTGGCTCTAGACACCTGCCTGTCTGCAACCAAGAAACTTTCAACTCAACACAAACAGTGCAAGGCAGCTTTCTTAGACTGCTGTAAATTTGCTGAAAAGCATAACCAAGAAAATCGGGGTCCGGTCCTTCCTCATTATCCAGTCGAGAAGTTGCCTGCTGTCCAGACAGAGCGCTCcaatctctctctgaatgaAAGATTTGAGGAATATGCCAAAAAATATGATGAATATAAATCATGCTGCCTGCTGGGAACTAACAGTAGTGTGCGTCAGGAGAGCTGCTGGGATCGTAGCAGTAAATTACAAAACGATGATGAAATGTGTCAGATAGCTTTCCATGAATGCTGCATCTTTGCTGAAAATCATCGGAAAGAAGATGAGAGTATGGTCACTCTTGGTCATTCAGGGTTCCAAGTTGACACCCCTTTGACTGATGTCTGGAAAAAGCGCTCCGctctctctctgaatgaaaAGTTGGAGGAAAATGAGTTTGAATCTGACACGCCCTGGACTGCTGTCCGGAAAAAGCGCTCTGCTCTCCCTCTGAATGAATTGTTAGAGGAAAATGCTAAAAAATACGGACATTTTAAACCATGTTGCCTGGAAGGAACTGACAGTAGCCCAACTCTGGAGACCTGCGTGGATCGTGCCCGGAAATTACAAACCCCTCACAGACCCTGTAAGATAGCATTCCGTGAATGTTGCAGCTTTGCTGAAAAGCTTCGGAAAGAAAGTGTCGGTGTCACCCTTGCTCGTTCAGAAATAGAGTTTCTGCTTGATGTGAAGACAGAGCAGGTCCGCAGCTACTTTCCAGAGAGCTGGTTGTGGGAAGAACATGAAACTGAGAGGTCTGGATGGGTACAAGTCACTAAAGGTCTTCCTGATTCCCTGACTACATGGGAGGTCAGAGCTGTTGGGGTGTTCAACAATGGAATATGTGTCGCAGATCCCCTGCAAGTATCAGTTCAGCAGGCAGTGAGTGTAGATGTGCCGCTGCCTTACTCTATGGTGCGTGGGGAGCACATCGAGCTCAAGGGCTCCGTCTACAATGAGTATGATGCAGATACACCATACAGTGTAACTTTGTCGGCatcagagggtgtgtgtgtgtttggtggaaCTCTTCTGACAGATGAAGGTTACCGACAATTTAACAAAGGCACAATTGAGGGCCATTCTGTGGCACTTGTCCAGTTCTTCATCATGGCATTAGAAGTGGGGAGTCATAAACTCAGCTTCACTCTTACAACCAGGTGGGGAAGTGAGACGGTGATCAAGACACTAAGAGTAGTGccAGAGGGCATTAGGAAGGAAATATTTGTTGGAAACAGGATTGATCCAAATGGCATCTATGGCACACCTGTGACACGTATTGAGCTCAGAAACTCCCTTCCTCCAAAGATTGTGCCCAAGTCCACTGTGGAACGTCTGCTAACGGTAAACGGTGAGGTGCTGGGAGAGTTACTGTCTATCGTTATAAACCCGAAAGGGATCATGCAGTTGACTAGCCTGCCCAGAGGCTCTGGAGAGGTGGAGCTTATGGGTCTTCTTCCCATCTTCtttgtttatgattatattGAGCAGTCTGAACAGTGGGGAAAGATAAGCGAATTTGGAAACAGCATTCTTCTAAAGAGAAAGCTAAAAGAGGGTATCACCAGTGTTATGTCATTTAAGGCAAAGCTGGAGAACAGTTTCAGCATATGGAAGAACAAAGGACCGAGCACATGGCTGACTGCTCTGGTGGTGAAGACTCTGGCTTCTGTGGACAAATATGTCACAGTGGATCACGATGTGCTGTCCGGTACTGTCCGCTGGCTGATTACGAAGTGTCAGAACCCAGATGGCTCCTTTAGTGAGATATCCAGCTACAAGCCTATCAAGCTCATGGGTGCAGGAGCAGATGTCACTGAACAGTCTGTGTTTCTCACATCGTTTGTAGTAATTGGGATCAAAAATGCCTTGACAGTTCCCAAGTCCAACTTACAGACGTATGCACATGCTGTGGAGAAGGCGACACACTACTTGTCCTTACAAGCGACAAAGGTGAAAAGTTTATATGTGAGAGCCATAGCAGCGTACGCCCTGACGCTTGTTGACCTCAACAGCCGACATGCAGTCGCACTCTATAATCAGCTTAAAAAAGAGTCAAAAATTAAAGgaAACCCAGTAACTGTCCGCTTTTGGGAGGAGAACGAGGCCCCTCGGGACCCACTAAAGCCAAACAGGGCCTCTGCACTGTCAGTGGAGACCACTGTCTATATGCTGCTCAACACTTTACTCAGAGGAGACACAACATATGCCAAGCCGATCATCCAGTGGCTCACTGATGATCAGCGATACGGAGGAGGTTTCCACTCAACTCAGGACTCTCTTCTAACACTGGAGGCCTTGACCAAGTACAGTATCTTAGCTCGTAGAGCCACTTTACAAATGGAGGTTGACGTGACATACCGGAAGAAAGGCAGTATCGGCCGTGTTATTCTGATGCAGAGTAACCCTGTGGGCAAACCCCTTAAGGTAGAAcatgctgatgatgtcatactGAAAACAGGATACAGCACAGGGGTGTCATTTGCTAATTTGAGAACAGTGTATTAtgaaacaacagaaaacaacGATAATTGCAACTTTGACATAGCAATAGATGTTCATCCCCGAAACCCAAATTCAAGAGATCCTATTCTTCTCTCACCGCGGATAGTTGCCTGTGCCAAatATAAGCCACATAAAAATGAGGTTGAGACTGAGGCAGGTCACACAGTCATGGAAATTAATCTGCCCACTGGTGTGAGCCCAATCCAAGAGGACCTAAAAAGGTTTAGGGATGGACTCGAGAGTCGTATTTCTGACTATGAAATAACAGACAACCAAGTGATTCTCCAGATAGATTCCATACCCTCAGAGGAGTTCTTCTGTGTGGGCTTCCGTATTCAGGAGGTGTTTAGAACTGGCATGAACAGTGCTTCTGTCTTCAAAGTGTATGAGTATCATGATCCAGACAGTCAGTGTACAAGGTTCTACTACAGTCAGAGCCGCAGGCTTCTCCGTCTCTGTGATGGAGATCAGTGTCAGTGCATGGCAGCTGAATGTTGCAACGTCAAGGCCAGCATTGACCCTACTCTTACTGTTGAACAGAAAATACGTGACGTGTGCAAAGGCAACATCAAATATGttttaaaagtgaaaataacATCAGCTGAAGCAGAAGGTGATTTTCTGACATACAACGCAAATGTGGAATCCGTCATTGAAAAAGGGTCATTAGACATTACGAGGTCAGGTGCATCTGAGGTCAGCTTTGTAAAGAAGGCAACTTGCACCTCATCAAATCTGGAAATTGGCAAGCAGTACCTGATTATGGGCGCAGAGATCATGCAGCTTCGAGTAAACCGAAGTTACAGGTACAAGTTTCCACTGGACTCTCAAGCTTCTGTGGAGTGGTGGCCCTCGGATTCCGACTGCCAAACTAGCTCTTGCAAACAATATACCaatgttttaagtaattttgaaTTTGATTATCTTACTAGCGGCTGCCTTTAGAGTGGCTgctctacatttataacatctgtattttcatttattctggAACACTGTGGAATTTGTTTAAGATATGTATATTTCCATATACAACCTCTCATAACAATGCCTGTAAGGGCTATTgaaattatattacatataatttaTGCATAATTTGCACATTACATATAAAATCTAATCTATAAGATCTACACAGTTATTGGAACAACATTAACATCATAAACAAGACCAGGGCATATCATTGtgaagctagctaacattttaatgcaaatttgACTTAACTAGCCCTTTTAACCTGTTGGAGCACCATAAACCTAATTCATCAGAACATGACAGAAAATATCACACAGATTTTCTTGTCGTTTCTCTTGTAAGCCAGTTATGTCAGGCTTTTGACTTCAAGTCTTTTCAAGTGTTATGACAGATACCTGCATACTGCCTGTCAAGCGAAATCAGGTGTATACTGTTCCTACTTGTTATTTCTGACCTCCACAAATTTGGTCCACAAGTGACTGAATTTGAAAAATTGCTTGAACAACTATACAGGCTAACTAAGAAAACACATCAGGTTTTGTGATTATTCCACATACACAAAGgtggaaacacacaattttataggatgtctttgtatgctgtagcattaagatttcctttcactggtactaaggggcccaaacctgttccagcaagacaatccccctgtgcacaaagcaagctccataaagGCATGGTTTACCAAACTTacaaatttgtatattttaaaagttcAAGGTACAAATTTATTCCTGACCTGCACTGTACTTtccaatattttcatttttgtgtcttgttttttCCTGGTCCAATTAGGCCACCAGCCCTTTCAGTCCAATGTCCATAcaacttaaaatgtaaaaatacacagtgaCAACACCTGCCACTATTATCAGCCAGGCTAAGAGTCTAACACTACTCattcatattttgccattatACCATaggcactgttgaattctcaattctgattattcagatcacagctttatattaatgtatctGTTCCAATATGTTaacatttctgta

Function

symbol description
c5 Predicted to enable endopeptidase inhibitor activity. Predicted to be located in extracellular space. Human ortholog(s) of this gene implicated in several diseases, including complement component 5 deficiency; liver cirrhosis; neutropenia; paroxysmal nocturnal hemoglobinuria; and pneumonia. Orthologous to human C5 (complement C5).

NR:

description
complement C5

GO: NA

KEGG:

id description
K03994 C5; complement component 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940113.2 True 6761 mRNA 0.43 46 5840501 5865005

Neighbor

gene id symbol gene type direction distance location
cntrl cntrl coding downstream 1967 5791410 ~ 5838534 (-)
LOC113542489 LOC108255707 coding downstream 308186 5524146 ~ 5532315 (-)
LOC117595987 NA coding downstream 606684 5232083 ~ 5233817 (-)
kmt5ab LOC108256031 coding downstream 739007 5084057 ~ 5101494 (-)
mob1a LOC108255806,LOC107087288,LOC107739988,LOC101073635,LOC102234237,LOC107675956,LOC101160416,LOC107702973,LOC103470272 coding downstream 824086 5007202 ~ 5016415 (-)
prdm12b prdm12b,prdm12,LOC108255448,LOC108423597,LOC103042983,LOC107688643,LOC107731029,LOC107665021 coding upstream 833 5865838 ~ 5870388 (-)
surf4l surf4l,LOC100304967,LOC108423697,LOC107595501,LOC107740812,LOC107688631,LOC103043297,LOC107665048 coding upstream 64146 5929151 ~ 5938345 (-)
ciz1b LOC108256061 coding upstream 78297 5943302 ~ 5953387 (-)
cmlc1 cmlc1,LOC107374630,LOC108230875,LOC103473836 coding upstream 295867 6160872 ~ 6161633 (-)
ak5l ak5l,LOC108255392,LOC108423692,LOC107595531,LOC107731024,LOC107665022,LOC107740835 coding upstream 299762 6164767 ~ 6172156 (-)
G350114 NA non-coding downstream 109781 5730462 ~ 5730720 (-)
LOC117595899 NA non-coding downstream 130027 5707923 ~ 5710474 (-)
G350090 NA non-coding downstream 149732 5690361 ~ 5690769 (-)
G350061 NA non-coding downstream 180186 5660100 ~ 5660315 (-)
G350058 NA non-coding downstream 195429 5642441 ~ 5645072 (-)
LOC117595975 NA non-coding upstream 73461 5938466 ~ 5941832 (-)
G350513 NA non-coding upstream 444127 6309132 ~ 6310450 (-)
LOC117595904 NA non-coding upstream 518099 6383104 ~ 6388571 (-)
G350664 NA non-coding upstream 829850 6694855 ~ 6695063 (-)
G350714 NA non-coding upstream 877388 6742393 ~ 6742602 (-)
LOC117595919 NA other downstream 261520 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 317220 5362282 ~ 5523281 (-)
G349951 NA other downstream 476219 5321513 ~ 5364282 (-)
hip1rb hip1r,LOC108255864 other downstream 512949 5248648 ~ 5327552 (-)
G349584 ung other downstream 1300670 4539283 ~ 4539831 (-)
pappab LOC108255326,LOC108423596 other upstream 191976 6056981 ~ 6120959 (-)
LOC113542569 NA other upstream 481658 6346663 ~ 6352372 (-)
G350867 NA other upstream 899909 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 1720467 7585472 ~ 7597962 (-)
card9 card9 other upstream 1737902 7602907 ~ 7607466 (-)

Expression


Co-expression Network