LOC113542541 (LOC108255813,LOC108255349)


Basic Information

Item Value
gene id LOC113542541
gene name LOC108255813,LOC108255349
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3993746 ~ 3997416 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940140.2
CAGTTGACTCTTAAAGTCCATACAAACAGCCCACACATTACAGCTGTCAAAGACCGGCATGACATACACAGTCTGAGTTCCTTGTAGGGGGAGCTTATACAAACTTTACCATGGACCACACTGATTTCACTCTTGATTACATGTCTGTTGACTATTCAAACTACACGGAAGATAACCAGACGTACATGGATGAGTCTCACAGTGTACACCACATTTGCTCTGGAGAGATTCTGTGCATGTTGCTGCTGGTTGTGAATGTGATCATCATCATGCTGGGGGTTGTGGGAAATGGTGTGGTGATCTGGATCGCAGGTTTTAAGATGAAGAAGACTGTCAACACCACCTGGTACCTCAGCCTGGCCATTTCTGACTTCATATTTTGTGCCACCTTGCCCTTCAACACCTTTTACATAGCCACATCTGACTGGACCTTCGGACTTTTCATGTGCAGGTTCACCTCCTTTGTGATGTTCCTCAACATGTTCAGTAGCATCTTTCTTCTCGTCATCATCAGTGTGGATCGCTGTATGGCTGTCATGTTCCCTGTTTGGGCACAGAACCAGCGTACCATAAGGAAGGCTTCACTGATAGTCCTTCTTGCATGGGTTTTATCAGTCTCCTTGAGTATCCCTTCCACCATTTTCCGTGATGTTCAGCACCATCTAGGCAGAACCCGGTGCCACAATAATTACATTAGCCAGCACACCCACGAATCTATAGCCATCTGCCGGTTTATTTTTGGGTTTCTGATACCATTCCTGGTCATCATTGTCTGCTACTCAGTCATTATCTTCAAGCTGAGAAGGAACCAGATGGCAAAGTCCACAAAGCCATTCAAAATCATGACAGCTCTCATTGGGACTTTCTTTCTCTGCTGGCTGCCATACCACACCTTTGTGCTGGTTGAACTGAACCAGAGCCTCCCCAATGACATCATCGCCTTTGGGCTCAAGGTTGGAACCTCAGTCGCTTCAGCTAACAGCTTCCTCAACCCAATTCTCTATGTCTTCATGGGCAATGATTTCAGGCAGAAGTTTAAGAACTCCATCCTGTCTAAGATTGAAAATGCAATAGGAGAGGAAGGACGCACCATGAGCCGCTACTTATCCCGTTCCAGTTCTATGGACGCCAGAGCATCGACTCACATCTGATTTGGCCTGGAACTATAAAACCAATAGAAAATCAGGTCCTGATTCATTTGTACATAATGTATTTCAACAGGTCAAGTTCCAGCAGGAAATATACTATTTGAATAATCCTTTGGTCTCAATGTGattcaattaaattacattttaattgtacagcacttttaacaatatatattgtcacaaagcagctttacagaaatccagatgtagattttgaTCCCTAATGGACAAGCAAGAGGGGCTCCTCTGGGTGACTCACAACGGATAAAGGGATTATGAAGTGTAGCTATTTGGATTTGCACAAGTATTATGATGCAAAGTACTGGAAGTCAGTTTACTGAGCCGTCAAAAATTGGTTCATTGAAAGTATGCATTAGAATGTTTaagaaaatggacaaaaagacCTGCTATCAGGAAAAGAGAAAGCACTTGCCTTCTTTTGATAGATTTTAGGACATTTTAGGGTAAGAactatatgcagtatataattaaatatgaagCACTTTCTCTTGCTCTAGTATGTATTTTGAGGAGTATGTGTGAGGATATAATAACCTGTTAATCCTGCTAACcaattcaatttcaaaatcaatttcatttgtactgcatccttttttttaattgtccaATGGTCAGTGTATCATCTTACTGGTATGTTCTTAGTTGTGTCAATggcaaaatgtaataaaaacataGGTCATAAAAAGGAAATGGAATTTCGGGTGATATTTGAATGATTCAGTAGTTTTGACTCAGGCCATCTTCTTTGATCATAAAGGAATGGTAATTTATAGgaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940140.2 True 1946 mRNA 0.41 2 3993746 3997416

Neighbor

gene id symbol gene type direction distance location
LOC113542542 LOC108255316,LOC108255814,LOC108255815,LOC108262011 coding downstream 62 3990907 ~ 3993684 (-)
wu:fa19b12 NA coding downstream 113985 3874882 ~ 3879761 (-)
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding downstream 319890 3664972 ~ 3673856 (-)
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding downstream 424971 3552519 ~ 3568775 (-)
cemip2 tmem2 coding downstream 447266 3511115 ~ 3546480 (-)
LOC113542443 NA coding upstream 33017 4030433 ~ 4032187 (-)
sart3 sart3 coding upstream 66849 4064265 ~ 4084764 (-)
tmem119a tmem119 coding upstream 97064 4094480 ~ 4100412 (-)
selplg NA coding upstream 104560 4101976 ~ 4107185 (-)
coro1ca coro1c,LOC106584990,LOC106937262 coding upstream 109937 4107353 ~ 4154563 (-)
G349333 NA non-coding downstream 271727 3718239 ~ 3722019 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding downstream 296222 3695478 ~ 3697524 (-)
LOC117595902 LOC108255364 non-coding downstream 308440 3682580 ~ 3685306 (-)
G348909 NA non-coding downstream 377165 3615071 ~ 3616581 (-)
LOC117595903 NA non-coding downstream 386370 3561666 ~ 3607376 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding upstream 466758 4464174 ~ 4512012 (-)
G349655 NA non-coding upstream 705977 4703393 ~ 4704166 (-)
G349642 NA non-coding upstream 779614 4777030 ~ 4786024 (-)
G349805 NA non-coding upstream 1008860 5006276 ~ 5006649 (-)
G349812 NA non-coding upstream 1020690 5018106 ~ 5018675 (-)
trpm6 LOC108255945,LOC108438703 other downstream 113798 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 606016 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 827492 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 1028857 2811544 ~ 2964889 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other downstream 1207850 2784677 ~ 2785896 (-)
G349584 ung other upstream 541867 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 1251232 5248648 ~ 5327552 (-)
G349951 NA other upstream 1324097 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 1364866 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 1578372 5575788 ~ 5578981 (-)

Expression


Co-expression Network