LOC113542542 (LOC108255316,LOC108255814,LOC108255815,LOC108262011)


Basic Information

Item Value
gene id LOC113542542
gene name LOC108255316,LOC108255814,LOC108255815,LOC108262011
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3990907 ~ 3993684 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940141.2
ttatataccACCATTCTCAAACCCAAGGTTGCTTTACAATTTTAGAAATTTCAGTTATAAACAATAATTATGGGAATAGTTCTACAGAAGCCCCTCCAATGCTTGGGCGATCtcctgatggcaggtgtgtgtgcacaggtggGAGTGTAAATAAGAGAAGAATTGCTTGATTATAACACCTTGTTTCTCTCAGGGCAAAATGATAATTCTATAAAGCTCTAGCTACATGATAATATGCATTCAAAGAAGCATAAATGAGCTAGCAGGGCTTAGCAAAGGCTGCAgtctatcagtgacagtcatttTTCAACGTGCTTCACTGACACGTCAATGacacgtcatcagcagtgactgagaaggctCATAGAGTGGCAGGTTGTTATTTGGAGTTATTTGGTCTATCATCCTCATTTCCCCCCTAAAAATGCATTTGGACAAAAAAGCAAGTAAATAcataagtaaatacataaagCGCACATTGTCcagtcaaagtacaaattacacaaaaggtcAGACAGCAGAACTacaagttctgtgttttgtggtttgaaAGTGTGAACAACTTTTCTATGTGACCCCAGCAATACAACCACAGTCGTCTCTTGCTTAAGTGAGGGTGCAGGAGGGTGCGGAAACATAAAATGTGCAGTTATCAACTCACGTTTGTTTCCTTAGAACTGTGTCTGCCCTGAAAGGAGAACTGAAAGACAGAAATCGCCCAAAACGTTTGACCAGCACCATTAAGAGGAAAACACTTAGCGCTGAAATACTGTACTGAAGAAGTTGTCTGAAAGATTCAAACAGAATCATGGATTCAGCTGTAGATGGAGCAAGTAACTACAATGACTactatgattataataatacataccCTTTGACACCATCAGCGCCCACAGAAGTGTCTCCATCACATTGCACTGTGATGTGTGCTTTACTGGCAACAGCCAGTGTGATTATTATGGTTCTTGGTATTGCTGGAAATGGTTTGGTGATCTGGATTGCAGGGTTTAAGATTAAGAAAACAGTCAACACTGTCTGGTACCTCAGCCTTGCTGTGTCCGACTTCCTCTTCTGTGCCTTCCTGCCCTTGTCCATTGTCTATATTATTAAGGGTGATTGGGTCTTTGGTCGCTTCATGTGCAAGTTTACGTCCTTTATCTTGTTCCTCAACATGTTCAGCAGCATCTTCCTCCTTGTCATCATTAGCATAGATCGCTGTGTTGTGGTTATGTTTCCTGTATGGGCACAAAACAAGCGCAGTATACGCAGGGCCTGGGTGATGGTTCTACTAGCCTGGGTCCTCTCAGCATTGCTTAGCGTGCCAGCGGCCATTTTCCGACATACAGAAATTCACAACTCAAAACACGTCTGTTACTACAACTTCACACACGATGAAGAACATGTTGCTGTAGTGGTATGCCGATTCATTTTTGGATTTGTGATCCCCTTTCTGATCATCATTATCTGTTATGTCCTCATCATCCGAAAGCTGAAAAATAACCAGATGGCAAGGTCCAATAAGCCGTTTACTGTCATGACAGCACTGATAGCTGCTTTCTTCATTTGCTGGATGCCTTATCACTTTTTTAACTTATTGGAACTAAATCTAAAATATGCCAGTGTCATCCCGACCGGACAAATAATTGGAAGCACTCTTGCCAGCGCCAACAGCTTTATGAACCCAATACTTTATGCTTTCATGGGAAAGGACTTTAAGAGGAAGTGTTATGCACTTCTGTCTAAGATTGAGAGCACACTCGAGGAGGAAGCCCGGAGTACACTCCGAGGGACATCTATTACTTACTCAGGAGACGGCAAACTTTCAAGTACTGTCTAATGTTATCAGAGGCCTTTTAAGAATCCCATATTAACAAAAAGAGGAATTAATATCTGCTTCATAACAGCCAGCTCAATAACAGCGAACTAAAGAGATACATATAGATAGTGCTCTGttaatattgaataatatttctaaaatattgcGGATGTATTTGGAAAGaaacatttacactgaaatattacatttacttcAGGTTATGAAAGGATGTACTGAGCTGTCATCTttcaaagttattattattattattattattattattattattattattattattttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940141.2 True 2124 mRNA 0.40 2 3990907 3993684

Neighbor

gene id symbol gene type direction distance location
wu:fa19b12 NA coding downstream 111146 3874882 ~ 3879761 (-)
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding downstream 317051 3664972 ~ 3673856 (-)
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding downstream 422132 3552519 ~ 3568775 (-)
cemip2 tmem2 coding downstream 444427 3511115 ~ 3546480 (-)
klf9 klf9 coding downstream 678051 3307168 ~ 3312856 (-)
LOC113542541 LOC108255813,LOC108255349 coding upstream 62 3993746 ~ 3997416 (-)
LOC113542443 NA coding upstream 36749 4030433 ~ 4032187 (-)
sart3 sart3 coding upstream 70581 4064265 ~ 4084764 (-)
tmem119a tmem119 coding upstream 100796 4094480 ~ 4100412 (-)
selplg NA coding upstream 108292 4101976 ~ 4107185 (-)
G349333 NA non-coding downstream 268888 3718239 ~ 3722019 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding downstream 293383 3695478 ~ 3697524 (-)
LOC117595902 LOC108255364 non-coding downstream 305601 3682580 ~ 3685306 (-)
G348909 NA non-coding downstream 374326 3615071 ~ 3616581 (-)
LOC117595903 NA non-coding downstream 383531 3561666 ~ 3607376 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding upstream 470490 4464174 ~ 4512012 (-)
G349655 NA non-coding upstream 709709 4703393 ~ 4704166 (-)
G349642 NA non-coding upstream 783346 4777030 ~ 4786024 (-)
G349805 NA non-coding upstream 1012592 5006276 ~ 5006649 (-)
G349812 NA non-coding upstream 1024422 5018106 ~ 5018675 (-)
trpm6 LOC108255945,LOC108438703 other downstream 110959 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 603177 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 824653 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 1026018 2811544 ~ 2964889 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other downstream 1159228 2773722 ~ 2831679 (-)
G349584 ung other upstream 545599 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 1254964 5248648 ~ 5327552 (-)
G349951 NA other upstream 1327829 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 1368598 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 1582104 5575788 ~ 5578981 (-)

Expression


Co-expression Network