LOC113542577


Basic Information

Item Value
gene id LOC113542577
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2164473 ~ 2166382 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940198.2
cacacacacacacacacacacacataaggaaATAAAGGACTGACCTCAGGATCAGAGCTGCAAGAGGTTCTTTCATTCTTTGCTGTCTTTCAGATGTCCTTTAAAAGCCGTCAGTAACAAGAGCACAGAAAAACACGAACAGTTATGgaTGAAAGTCAAAGCCTGCTGCAGCAGTTTCAGCAGGATGTGGAGGAGGTTCGGGTCATCATGCACGAGAACCTGATCAGGACCGAAGAGCGCAGGGAAACCCTAGACGAGCTGGACCAGAGAGCGGAAAAGCTACtgaaAGTAAGAACTTTGCAAAGACAACAAGGAGACCTGCTGAGAATCAGCATCAGAGGAACTGGATTCGGAAAGGGATTTGTTGTGCAATGTTTTTggttatcatcatcatcctcctcatcgtcatcatcactgGGACCCGTAAGCACTggttctgatgatgatgatgatgctcgTGGACTTGATTTCTTCTCAAGATGTTTAGAAAAACGTCACTGTTCATGGAGTCACTAAACACAAGAGTTCGGTGTTTACTCCAGATGTGTCTTCAGACATCTGTGCTGATGAAGTGGTACCTCTGGATCTGACCGTCTTTCACTTGCTTCTTAGAGTGTTGCGAAAAAAATACATCGCAATGTTAAAAGCTATTAgcacactagcaagcgacaagcTAAAAGGTGCAAGCTAATTTTATTCTGAGTTTAATCATTTGCATGGAAGACTGAAGCTTGAGTTGCGCTAATGCTTTTGTGTCCAAGTCAAGATAAAAGAACCACTAGCTTAAGCTACTAGGAGAAACACTAGCTCAGAGACCGTAGTCGTGAATTTCACGTTGAAAATAGATCAATTTCTGCGTCTGAtttgtttttcctccttttcctgcttctaccttttcttttcttaagtAATAAGCAGTGAAATGAACATGCTTAGTCCATGAAGCAACGCCACACGTGACTGAAAAATGATCAGGTCCGAGATCGCTGATGTTTCTGTCAGGATCCAGCGTCTGTGGAAATGAAGGACCTTAACCAggaaactaataataattatacttgACAGTGTTCTCGCTTACAGAATGAAATAATTAGCCTTTATTATTTAACTTAAAACCTCTCTTCCTTTCTAATCTGGGCGTTTtaactatttaatatttatgttttgactattttaattatttgctaTTTATGCTATGATTATTTTAACTATTTGATATTTATGTTGCAGAAAGAAATTGCAAGTGGTTTGTCCTGAAGTtgctttatctgtctgttttgctgcgttttaataaaaatgaatataaatgtcCAAAAATCATGATCACTGT
>XM_026940200.2
cacacacacacacacacacacacataaggaaATAAAGGACTGACCTCAGGATCAGAGCTGCAAGAGGTTCTTTCATTCTTTGCTGTCTTTCAGATGTCCTTTAAAAGCCGTCAGTAACAAGAGCACAGAAAAACACGAACAGTTATGgaTGAAAGTCAAAGCCTGCTGCAGCAGTTTCAGCAGGATGTGGAGGAGGTTCGGGTCATCATGCACGAGAACCTGATCAGGACCGAAGAGCGCAGGGAAACCCTAGACGAGCTGGACCAGAGAGCGGAAAAGCTACtgaagtgtgtgcgtAGTAAGAACTTTGCAAAGACAACAAGGAGACCTGCTGAGAATCAGCATCAGAGGAACTGGATTCGGAAAGGGATTTGTTGTGCAATGTTTTTggttatcatcatcatcctcctcatcgtcatcatcactgGGACCCGTAAGCACTggttctgatgatgatgatgatgctcgTGGACTTGATTTCTTCTCAAGATGTTTAGAAAAACGTCACTGTTCATGGAGTCACTAAACACAAGAGTTCGGTGTTTACTCCAGATGTGTCTTCAGACATCTGTGCTGATGAAGTGGTACCTCTGGATCTGACCGTCTTTCACTTGCTTCTTAGAGTGTTGCGAAAAAAATACATCGCAATGTTAAAAGCTATTAgcacactagcaagcgacaagcTAAAAGGTGCAAGCTAATTTTATTCTGAGTTTAATCATTTGCATGGAAGACTGAAGCTTGAGTTGCGCTAATGCTTTTGTGTCCAAGTCAAGATAAAAGAACCACTAGCTTAAGCTACTAGGAGAAACACTAGCTCAGAGACCGTAGTCGTGAATTTCACGTTGAAAATAGATCAATTTCTGCGTCTGAtttgtttttcctccttttcctgcttctaccttttcttttcttaagtAATAAGCAGTGAAATGAACATGCTTAGTCCATGAAGCAACGCCACACGTGACTGAAAAATGATCAGGTCCGAGATCGCTGATGTTTCTGTCAGGATCCAGCGTCTGTGGAAATGAAGGACCTTAACCAggaaactaataataattatacttgACAGTGTTCTCGCTTACAGAATGAAATAATTAGCCTTTATTATTTAACTTAAAACCTCTCTTCCTTTCTAATCTGGGCGTTTtaactatttaatatttatgttttgactattttaattatttgctaTTTATGCTATGATTATTTTAACTATTTGATATTTATGTTGCAGAAAGAAATTGCAAGTGGTTTGTCCTGAAGTtgctttatctgtctgttttgctgcgttttaataaaaatgaatataaatgtcCAAAAATCATGATCACTGT
>XM_026940201.2
cacacacacacacacacacacacataaggaaATAAAGGACTGACCTCAGGATCAGAGCTGCAAGAGGTTCTTTCATTCTTTGCTGTCTTTCAGATGTCCTTTAAAAGCCGTCAGTAACAAGAGCACAGAAAAACACGAACAGTTATGgaTGAAAGTCAAAGCCTGCTGCAGCAGTTTCAGCAGGATGTGGAGGAGGTTCGGGTCATCATGCACGAGAACCTGATCAGGACCGAAGAGCGCAGGGAAACCCTAGACGAGCTGGACCAGAGAGCGGAAAAGCTACtgaagtgtAGTAAGAACTTTGCAAAGACAACAAGGAGACCTGCTGAGAATCAGCATCAGAGGAACTGGATTCGGAAAGGGATTTGTTGTGCAATGTTTTTggttatcatcatcatcctcctcatcgtcatcatcactgGGACCCGTAAGCACTggttctgatgatgatgatgatgctcgTGGACTTGATTTCTTCTCAAGATGTTTAGAAAAACGTCACTGTTCATGGAGTCACTAAACACAAGAGTTCGGTGTTTACTCCAGATGTGTCTTCAGACATCTGTGCTGATGAAGTGGTACCTCTGGATCTGACCGTCTTTCACTTGCTTCTTAGAGTGTTGCGAAAAAAATACATCGCAATGTTAAAAGCTATTAgcacactagcaagcgacaagcTAAAAGGTGCAAGCTAATTTTATTCTGAGTTTAATCATTTGCATGGAAGACTGAAGCTTGAGTTGCGCTAATGCTTTTGTGTCCAAGTCAAGATAAAAGAACCACTAGCTTAAGCTACTAGGAGAAACACTAGCTCAGAGACCGTAGTCGTGAATTTCACGTTGAAAATAGATCAATTTCTGCGTCTGAtttgtttttcctccttttcctgcttctaccttttcttttcttaagtAATAAGCAGTGAAATGAACATGCTTAGTCCATGAAGCAACGCCACACGTGACTGAAAAATGATCAGGTCCGAGATCGCTGATGTTTCTGTCAGGATCCAGCGTCTGTGGAAATGAAGGACCTTAACCAggaaactaataataattatacttgACAGTGTTCTCGCTTACAGAATGAAATAATTAGCCTTTATTATTTAACTTAAAACCTCTCTTCCTTTCTAATCTGGGCGTTTtaactatttaatatttatgttttgactattttaattatttgctaTTTATGCTATGATTATTTTAACTATTTGATATTTATGTTGCAGAAAGAAATTGCAAGTGGTTTGTCCTGAAGTtgctttatctgtctgttttgctgcgttttaataaaaatgaatataaatgtcCAAAAATCATGATCACTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940198.2 False 1330 mRNA 0.40 3 2164473 2166382
XM_026940200.2 True 1340 mRNA 0.40 3 2164473 2166382
XM_026940201.2 False 1334 mRNA 0.40 3 2164473 2166382

Neighbor

gene id symbol gene type direction distance location
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding downstream 553 2156986 ~ 2163920 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding downstream 196334 1951629 ~ 1968139 (-)
rad17 rad17 coding downstream 256900 1901159 ~ 1907573 (-)
ccdc125 ccdc125 coding downstream 264409 1892268 ~ 1900064 (-)
fam151b fam151b coding downstream 272347 1886652 ~ 1892126 (-)
LOC113542514 NA coding upstream 2953 2169335 ~ 2178059 (-)
vamp8 vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711 coding upstream 25203 2191585 ~ 2199551 (-)
ncaph ncaph,LOC107709847 coding upstream 35334 2201716 ~ 2209741 (-)
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding upstream 86599 2252981 ~ 2282993 (-)
ogfod2 ogfod2 coding upstream 190889 2357271 ~ 2363155 (-)
G348200 NA non-coding downstream 22371 2141616 ~ 2142102 (-)
G348147 NA non-coding downstream 130609 2033557 ~ 2033864 (-)
G348143 NA non-coding downstream 177426 1986183 ~ 1987047 (-)
G348103 NA non-coding downstream 221762 1805996 ~ 1942711 (-)
G348094 NA non-coding downstream 288717 1794830 ~ 1875756 (-)
LOC117595926 NA non-coding upstream 75826 2242208 ~ 2242816 (-)
G348233 NA non-coding upstream 139743 2306125 ~ 2308604 (-)
G348264 NA non-coding upstream 234475 2400857 ~ 2401493 (-)
G348283 NA non-coding upstream 257333 2423715 ~ 2424331 (-)
G348309 NA non-coding upstream 379033 2545415 ~ 2546515 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 36828 1982054 ~ 2127645 (-)
G348145 NA other downstream 166003 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 335828 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 453565 1450335 ~ 1710908 (-)
LOC113542373 NA other downstream 634079 1505639 ~ 1530394 (-)
LOC113542580 NA other upstream 13157 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 435152 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 607340 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 618295 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 645162 2811544 ~ 2964889 (-)

Expression


Co-expression Network