LOC113528268


Basic Information

Item Value
gene id LOC113528268
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 161020 ~ 184551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298964.1
TCACTTCTCTTCCTGCTCTCTAACCGGATAACGacgtttattattatcattattattattattattatttggttattattatttggttattattattattattattattattattattattattattatttcggCCTGTGGTGCTGTAGAGTGGCGGTGTTTGGCTGCTCAGAGGGCTTTTCTTGTGGACTTGCCTCTGCTTTGAGTCAGTGAGAGCTAACAGAGCTAACAGAGCTGGTGTGTAGAAGCTCTTGCTGTGTGTCAGTGCTGGAAGGTGTGTTAGTGCTTTATTCCAGgatcAACAGCAGCCATCATGCATCTTTGTGCAGGAGTGATATTAATGCTAGcaCCCTGTCTGGTGGCGTCCTTAGACAAACAAAAGGTGTTGGGGAATCTGCATAAGATGGCGTCTCTCCCATGTCCTGAACAGTGCTCTAGTGAACTGATCTGGACCAGGTTTCAGAACCAGCGCGATGTTCTGGTCAGGTGTAACGGAGGCTCGTGCTGGTCTAAAGACGGGTTTGACCTCCCCGATGAACAGTACCTGAAGGGAAATTCCTCCCTGACGATGCTGAAAGCTGATTACAGCCTTCGAGGACTCTACATGGCCAAGTGTGGCTCTGAGACAATCTGTGAAGTCGTCTTTACGTTGTCCCCTCAAGTGATGAGCCGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCGGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAATGAGAAGATACAGATTATAAGTCCAGATTATAAAGAGAGAGCGTCTCGCATCAACATTCTTCAGATTAAAGCTGGAAATGTCTCTGACAGTGGCAACTACACAGTACGGGATGTCACGAATGAGGAGACTTTAGCCATCGTAAAGGTCCATATGAGAGATTGTAAAGCAGAACAGCAGGGTTCTGGAAGTGCGCTCGTGTCCCAGACTCACTCTCTAGAACATCGCGGTGTCTCTGaGGAGAAGCCATGTCCAGACTGTAAGCAGGACAGAGCCATGCCAGCGTGGGGGATTACACTGATAGTGGTGCTGGTGATTCTGCTCATCGTAGCAGGGTTAGTGATCGGATATCTGTGGAAAGAAATTCAGCAGCTCCGTGGGGAATCTGCAGACAGACACCAAATGACTGAAAATGCCAACCAACACCAGCAGCACGGAATGAATGGAATGAATGGCCGCAATCCAGAAGATGTGGAGATCTCAGAAGACACTGCTCTCTCTAACCATCAGCACTGAACGCTGGAAACCGGTACAGATGTTGGCTACGTCCGCATTAATCCAGATAGATCTGAAaactctgttttcattttaatatactCTCCTGTCTACACTGGAGTTTTCCAAAATTTGCTCATCCACACGGAAACATCTGGAAACGCTTACAAGCCTATACTGCGCGTGCGTGAAAAACTAAGCAGCTTCGGTCTGCGTCACTTctgaaaaacatgcaaactgaCGGTCGTACAACGTGACATTAATGTTTAACAACGCTATCAGACTGGACAGCAGGCACAACAACTGCAGTACAACATCGTCCACCatcttgtttgtgtttgagctgaatgggtcacatgactgtgtcacatgactaaaaatacgtcattgtttttgaatatctccattttcaaatttatcctCTTGGGAGAGCGTTTTCAAAAAGCTCAGTGTTCTCTGGACAAAAACAGCGTGTCAGTGTGGACAGAAGGCGCAAACTCGGAGATTAATGAGGACGTGGTTGTAGTTTCTTCTGCTGGGTGGTGAAAAATGAAGGAGGAAAAGAATAACCAGctgtgagtgacagagagatgaaaacaGCCCTGAGATTGCAATAAATATCCAGCTACTAGTGACTATAAACAGTAGAAATATTTTAGTAACCGTGTGACAGAACGCCCCCTAACACACTCCTCcaccttctcttcctctctttcagcGCAGTAGAGTATAAAAGCTGAATCTCAGAGCTGTTTAGAGATGTTTAGTGATGAACTGCAGACTCCTGAAACTCTGAAACTCCTTTCACTGACTGAATGAGGATCAGATTATTCCTGTTACAGTCCAGCTGCTGGCTCCAAGCTGAATATAGAAGtcactttattcatttattagtgATTTTAAATCTCCTGATAAGTAAAAGCTAAACTTTCCCCTACACTATAAGCTAAACTTTCCCCTACACTAACTCAGTTCACATTTAAATCTTAACCTAAACCCTTCCTCTctcccttcttctctctctctctctctctctctctcattttcatttattatattagccttttcttctcttccattTACTACTACAGTCTCCTCTTCACACTCATCTAATGTCGTTTATCTTTCACTTTTATCCCTTACTGCCTACCTCACTTTCGTCACTTTTTTCTGCCACTTGTGACAcgtgtgtgtgacgtgtgtgtgtgtgacgtgtgtgtgtgtgtgacgtgtgtgtgtgtgtgtgacgtgtgtgtgtgtgacgtgtgtgtgtgacgtgtgtgtgacgtgtgcgtgtgtatgttaTTTCTCCCTGATCCATCATGCATTACTCTTAATCACATGACTTCATCATGTCCGTGTTAGCATTCTGCACTTTTCCTCTTACTGCCTTCATGACTTGGCTCattactgacacacacctcTAACTCAGCTTTACTAACATGGCATTT
>XM_034298965.1
GTTCACTTCTCTTCCTGCTCTCTAACCGGATAACGacgtttattattatcattattattattattattatttggttattattatttggttattattattattattattattattattattattattattatttcggCCTGTGGTGCTGTAGAGTGGCGGTGTTTGGCTGCTCAGAGGGCTTTTCTTGTGGACTTGCCTCTGCTTTGAGTCAGTGAGAGCTAACAGAGCTAACAGAGCTGGTGTGTAGAAGCTCTTGCTGTGTGTCAGTGCTGGAAGGTGTGTTAGTGCTTTATTCCAGgatcAACAGCAGCCATCATGCATCTTTGTGCAGGAGTGATATTAATGCTAGcaCCCTGTCTGGTGGCGTCCTTAGACAAACAAAAGGTGTTGGGGAATCTGCATAAGATGGCGTCTCTCCCATGTCCTGAACAGTGCTCTAGTGAACTGATCTGGACCAGGTTTCAGAACCAGCGCGATGTTCTGGTCAGGTGTAACGGAGGCTCGTGCTGGTCTAAAGACGGGTTTGACCTCCCCGATGAACAGTACCTGAAGGGAAATTCCTCCCTGACGATGCTGAAAGCTGATTACAGCCTTCGAGGACTCTACATGGCCAAGTGTGGCTCTGAGACAATCTGTGAAGTCGTCTTTACGTTGTCCCCTCAAGTGATGAGCCGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCGGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAATGAGAAGATACAGATTATAAGTCCAGATTATAAAGAGAGAGCGTCTCGCATCAACATTCTTCAGATTAAAGCTGGAAATGTCTCTGACAGTGGCAACTACACAGTACGGGATGTCACGAATGAGGAGACTTTAGCCATCGTAAAGGTCCATATGAGAGaGGAGAAGCCATGTCCAGACTGTAAGCAGGACAGAGCCATGCCAGCGTGGGGGATTACACTGATAGTGGTGCTGGTGATTCTGCTCATCGTAGCAGGGTTAGTGATCGGATATCTGTGGAAAGAAATTCAGCAGCTCCGTGGGGAATCTGCAGACAGACACCAAATGACTGAAAATGCCAACCAACACCAGCAGCACGGAATGAATGGAATGAATGGCCGCAATCCAGAAGATGTGGAGATCTCAGAAGACACTGCTCTCTCTAACCATCAGCACTGAACGCTGGAAACCGGTACAGATGTTGGCTACGTCCGCATTAATCCAGATAGATCTGAAaactctgttttcattttaatatactCTCCTGTCTACACTGGAGTTTTCCAAAATTTGCTCATCCACACGGAAACATCTGGAAACGCTTACAAGCCTATACTGCGCGTGCGTGAAAAACTAAGCAGCTTCGGTCTGCGTCACTTctgaaaaacatgcaaactgaCGGTCGTACAACGTGACATTAATGTTTAACAACGCTATCAGACTGGACAGCAGGCACAACAACTGCAGTACAACATCGTCCACCatcttgtttgtgtttgagctgaatgggtcacatgactgtgtcacatgactaaaaatacgtcattgtttttgaatatctccattttcaaatttatcctCTTGGGAGAGCGTTTTCAAAAAGCTCAGTGTTCTCTGGACAAAAACAGCGTGTCAGTGTGGACAGAAGGCGCAAACTCGGAGATTAATGAGGACGTGGTTGTAGTTTCTTCTGCTGGGTGGTGAAAAATGAAGGAGGAAAAGAATAACCAGctgtgagtgacagagagatgaaaacaGCCCTGAGATTGCAATAAATATCCAGCTACTAGTGACTATAAACAGTAGAAATATTTTAGTAACCGTGTGACAGAACGCCCCCTAACACACTCCTCcaccttctcttcctctctttcagcGCAGTAGAGTATAAAAGCTGAATCTCAGAGCTGTTTAGAGATGTTTAGTGATGAACTGCAGACTCCTGAAACTCTGAAACTCCTTTCACTGACTGAATGAGGATCAGATTATTCCTGTTACAGTCCAGCTGCTGGCTCCAAGCTGAATATAGAAGtcactttattcatttattagtgATTTTAAATCTCCTGATAAGTAAAAGCTAAACTTTCCCCTACACTATAAGCTAAACTTTCCCCTACACTAACTCAGTTCACATTTAAATCTTAACCTAAACCCTTCCTCTctcccttcttctctctctctctctctctctctctcattttcatttattatattagccttttcttctcttccattTACTACTACAGTCTCCTCTTCACACTCATCTAATGTCGTTTATCTTTCACTTTTATCCCTTACTGCCTACCTCACTTTCGTCACTTTTTTCTGCCACTTGTGACAcgtgtgtgtgacgtgtgtgtgtgtgacgtgtgtgtgtgtgtgacgtgtgtgtgtgtgtgtgacgtgtgtgtgtgtgacgtgtgtgtgtgacgtgtgtgtgacgtgtgcgtgtgtatgttaTTTCTCCCTGATCCATCATGCATTACTCTTAATCACATGACTTCATCATGTCCGTGTTAGCATTCTGCACTTTTCCTCTTACTGCCTTCATGACTTGGCTCattactgacacacacctcTAACTCAGCTTTACTAACATGGCATTT
>XM_034298966.1
TCTTCCTGCTCTCTAACCGGATAACGacgtttattattatcattattattattattattatttggttattattatttggttattattattattattattattattattattattattattatttcggCCTGTGGTGCTGTAGAGTGGCGGTGTTTGGCTGCTCAGAGGGCTTTTCTTGTGGACTTGCCTCTGCTTTGAGTCAGTGAGAGCTAACAGAGCTAACAGAGCTGGTGTGTAGAAGCTCTTGCTGTGTGTCAGTGCTGGAAGGTGTGTTAGTGCTTTATTCCAGACATGTGGAGCTACACACTTCTGTTCGGGCTGCAGATTTTCACCTTTGCTGCCACTGTGTCTGGTGAACGTTCTGTAACAGCCAAACTTCATCACCCTGCTACTCTCACCTGTGTCTGGAAATGTCCTGGTTCACTCGAATGGAGTTTCAAGTTTCATACGATTGTGGCTCGGTGTGATCAGACGTCATGCAGGTCAGAGGAGAGATTTAACGTCTCTCATGATCAGTACCTGAAGGGGAATCCACATCTCACCATCACTGCAGCTGATTACAGTACGAGAGGTTTATACACGTGTCAGTGTGATGGCAAAGACGTCTGTAACGTGCGGCTCCTCATTGAGACTCAAGTGATGAGCTGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCTGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAATGAGAAGATACAGATTATAAATCCAGATTATAAAGAGAGAGCGTCTCGCATCAACACTCTTCAGATTAAAGATGGAAATGTCTCTGACAGTGGCAGCTACACAGTACGGGATGTAGTGAACAATGAGACTTTAGCCATCTTAAAGGTCCATATGAGAGaagACCAGCCAGGTTCGGACATCAGGCAGGAGGGAGGTGTACCAGCGTGTGGGATTGtactgatgctgctgctgctgctggttgTAGCTGCATTTGTGGTCCTGATGGTGATGTATGTGCGTCTGAGGAGAGAGAATCAGCAGCTCCGTGAGAAAGATGAAAGGAACGGACACGAGCTGCGCCCAATGAATGGAAATGCTAACCATGATCCAGGAGAAGAGCAGGACTGAGTACACACTGAGCTTACTGAACccacaaacactgaacactattctattataataaaatctttagaatagaatagaagagCTTTATTGTGCTGCATGATCATAGTGAAAGTAAGTTTGAATTTCCTGCTGTTACATGATGGAGAATATGTCAGTAATGTAAATATAGAGTAACGTCCTTTACAGGAAGAAGTGTGCAGTATGAGAGTGAGTGCAAGTGCTGAAACAGCAGGGTGGTGGAGCTGTAGGTCACATACACAAGTGACGGATGTTGTACAATCACAGTGAGGTAACAGTGTcggggtcagggttagggtgttAATGGTTCTCAAATCACGCTGAGCAAATTGACTTCAGACGTGTTcagtggtgtttaatgatgCGTTTCAGTCACGTCTAATTCAGCACATGCAGGGAAACGTGGTGCTTTTCTTCATAATTCAGTATTATCCGTAAGAAAGGACCAGAATAAATAACTACTGATGTGATAATCAGAGTGTAGACGAGCCACAGTGTGTAAAACTACTGATCAGGAACTACTGAAACTTCTTGTACTGACTGGTGCTAAGTGAGGACGTGAGTTTACTCCTGTTACATTCCATCCACTGACACCCCGTGCCTTATAGACTTCCCTTTAACCTTTATTACAGGTATTAAAGACCTCAGTAAGACCTtttataacacataataacTGATGCACTATATCACGCCGTGCCTTATAGACTTCCCTTTAACCTTTATTACAGGTATTAAACACCTCAGTAAGACCTTTTATAACGCATAATAACTGATGCACTATATCAGGTCACATTACCAGATTGATCTTTATCAATCTGGATCTGATCCTACAGTCATGGTACGAGGAAAGTACCCCCTCCTCCAGTTCTATGTTTTTCGTTATCAGAGTTAGTTGTTTAGTTATCAGCATTCTGAATGTTgctttactttttgggaaaaaaatgactacatattaaaatctgttgttgtttttttgtggtaacaattttttttttacaattttcaattttcagtAACAATCAATTGTTAGAGATGcgtgtgtgttattgtctgtttgtctggttgcttttatttctgaattttatgTGAGGTCGTATTATATTTCACTCTTCCTGCTTCAGCTTTACCAAAAATGCCCTCCTCAGGTGTTATTagtgtttatgtgaaatatgCAAAGTGTTTTCGCATGAAGGAGATCAGAGGAGacgcatcttaatcagagacttCGCTCTTCttataaagtgtttttatgGATAAAGTTATGAATGAaccgcatgtaaccatggttccccgagggaacgagacgctgcgtcgaaaCACTATGGGAACGCCCtcagcgtgaccacgctctgaatcacatgtgtaatcagtccaatggatgggcgagaagtcacgggcggggtgacgacccggaagcttaaaagcacaagcggtggatacagcggcagcttctgagaaatgaagcaagcgctcacagggatgccggaagtatggcactgagacgcagcgtctcgttccctcggggaaccatggttataTGCATAACCTAGAGACGTTCCCCTTTAGGAACTCGAGCTGGAAGAGCACAGCAAGGGTGAGAGAACAGAAAAGCCTTGAGTGGCTCGCATATCGAGGCCATagaacctgacacacacacagttaagcCTCTGCTGGTCGGGCTCCCGAAAGGGAGGAAGACAGAAGGCCTGGAGCACGACAGGCCGTGGTGTAGAGGAGGGAACTTTAGGAACATAACCCGCTTGAGGGTAGAGAAACGCTTTGGCCAgaccaggcgcaaagtctaaataagaGGGGGCCACTGAGGGCCCGAAGATCCCCAACTCTCTTTAGAGAGAGCCTCTAACACCACAGCCAGGTCCCACGGAGGGACACAAGATCGTACCGGAGGCCTCAGCCTCAGCacaccgcggaggaaacgtgtaactagggggtgtctgcccacagaCCAACCCTGCGGAGAATcgggcctgcaggaactccagcaccaACTGGGCAGTTAACTGGGCCGAGCTGGTGGTCTCTGCACCAAGAAGGGgaaagtttccacttcaaggcatacagtttccttgttgagggagctctggattggagaATGGTCTCATCTTTCTTTATCATCATGTTGTAAAAGTACAACAATTCAGCAGAGAAATGTGTCTATAATAAATGTAGGTGTTcattatttgtgtatattaaGCTCTGCTTAGATTTTGTGCACATTGTAATGCACTGTTCTCATTTGTTCTGTATATAATTGTTATCTCTATATCttactattatttctattagtagcagtaataaTACTGCATTTTGTCTTCACACACGTTACCTttgtaaggatttttttttaatgaaaatgtgttttttactCTGCTGAGCTCTGAGAGCTGCTTATCTACTGATGTACAGTCACTTGAATAGACACTGAAAATGTACTGAATGTGAAAATGTCTTGTTGGTTTGGATCTTTTGTAGTTTTATGTTTTTGATGGCACTGCAGATCCACCTGAGGAGTAGAAAAACCTCATTCAGAAGCTTCTAGAGgttttaatatacatatattatatatatatataaaatttatgcTCTTAATGTAACAGTATAATATATGACTATTGCATTGTTTTAATGAGAATGATtaaatcagggttgccagatttcagcAGAAAGctcaggactgtgtgtgtttagtaactgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagactacagTCTCTTTATCACGTCAGTACTCAGCTACATTCTGTCTTCTGTCCTGTGCTTTGTGTCCAAACACATTATCCAGcttactgttttcttttattaaaataaaaataaaaccatgagAAACCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298964.1 False 2736 mRNA 0.44 6 175316 184549
XM_034298965.1 False 2660 mRNA 0.44 5 175316 184551
XM_034298966.1 True 4088 mRNA 0.43 5 161020 184542

Neighbor

gene id symbol gene type direction distance location
LOC117595912 NA coding downstream 26481 126990 ~ 134539 (-)
LOC117595913 NA coding downstream 38359 119182 ~ 122661 (-)
LOC117595914 NA coding downstream 44515 95456 ~ 116505 (-)
LOC113525747 NA coding downstream 69151 86459 ~ 91869 (-)
LOC113524950 NA coding downstream 80670 73680 ~ 80350 (-)
LOC113528265 NA coding upstream 36878 221429 ~ 226704 (-)
mybbp1a mybbp1a coding upstream 54266 238817 ~ 254544 (-)
fgf10b NA coding upstream 72976 257527 ~ 260223 (-)
adamts12 adamts12 coding upstream 77088 261639 ~ 282406 (-)
lrp13 LOC108255551 coding upstream 188899 373450 ~ 385400 (-)
G347652 NA non-coding downstream 22207 120309 ~ 138813 (-)
G347634 NA non-coding downstream 126242 17440 ~ 34778 (-)
G347703 NA non-coding upstream 144363 328914 ~ 329608 (-)
G347704 NA non-coding upstream 148691 333242 ~ 333755 (-)
G347672 NA non-coding upstream 169776 354327 ~ 355340 (-)
G347723 NA non-coding upstream 210816 395367 ~ 397450 (-)
G347753 NA non-coding upstream 343397 527948 ~ 619562 (-)
LOC117595978 NA other downstream 11214 118198 ~ 149806 (-)
G347628 NA other downstream 35814 87567 ~ 125206 (-)
G347622 NA other downstream 39909 95363 ~ 121111 (-)
G347621 NA other downstream 61358 86663 ~ 99662 (-)
LOC117595911 LOC108255570 other upstream 7998 192549 ~ 201990 (-)
LOC113528266 NA other upstream 20929 205480 ~ 210705 (-)
LOC117595925 NA other upstream 45974 230525 ~ 237272 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 179455 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 233756 418307 ~ 466255 (-)

Expression


Co-expression Network