LOC117595912


Basic Information

Item Value
gene id LOC117595912
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 126990 ~ 134539 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298967.1
GAAGTGACTCGCTGTCAGGTGATTTAAAGTCCCcaacaaacccaaacaaacaaagacgAGGCTCAGCAGTGTTCAGCAGCAGTCTGGGATTAATGTAGCTTTTATTCCGCtgatactcagtgtgtgtgtgcttgtggaTTTATTCTGCACTTCAGGGGTTTTGTTTCTCCTCATCAGTGTGAAATGATTCTTATCTGGAGACATGAGGAGCTACAAGATCCACGTGTTCCTGTTCAGGTGTCTGATCTTAGCCACTATTGACTCTGTGTCAGCTGGACACTTTGTAAAGACCAGATGTAATGAGTTGGCTACTCTGCCCTGTAAACGGAAATGTTCTGGTTTGGTCAAATGGGTCAAGACCCACAGTCGAGATGATGTCATCGCTCAGTGTGATCAGACATCCTGCAGCTCAGAGGAGGGGTATGAAATGTCTCATGATCAGTACCTGAAGGGAGATCTGTCTCTCACCATCACTGCAGCTGATTACAGTAAGAGATCCTGGTACACGTGTCAGTGTGAGGGTAAGGACGTCTGTGATGTGCGCCTCAGCATGGAGCGCGTTAACTTTATCAGAGAGTTCGATCCTGGAGATTCCCTCACTGTGGATTTGCCGATCTCGGAGAGAGTGAAGATCACGTTTAACAGGAGCGGTGATGATGGAACTCAGAGCTCTGTTACACTCTGTACAGTCGAGGGACGTAAAGTTCACTGTAACCCTGAATATGAGAAGAGAACATCGTTCCAGTCCTCACTTACTCTGAGTGATTTAAAGCTGAGTGACGGcggtgtgtacactgtgtgggacactgagaaTGATGAGATCatagctacacacacactcagtgttacAGGAAAGATCAGAACCAAGTCTGTAGAAGGTGAACAGGTACCCAGCTGGGTTGTTGGACTCTGTTGGTTCTGTCTGGGTTTGGTGCTTGGCATTTTCCTGCATTGTTTTGTCCTTCCATCGATATTAAACTGCTGTGATCGGGACAAGAAGAAAAGGGCAAAGAATTCAGAGCGTGATTGCAGCACTGCGGAGAAGAATGATGATTCCACTGAAATCATCCagctgaactctgtgtgtgttgagagtCTCTAATGGATaatcatctattttttttttactttttacattcaTCATTTAGTGATGTATTAGTGTTATGTACAACCTGCGTAGCTTTACTGACTTCCATGTACAGGTTTCATTTACTGGAATATTTCTGTATAAGTGAGGATGTTTGAGAGGAGAGACATAAGCacatctgctaaatgctctTAATGCAGCTTTTATAAGCAACTTGAGAAAACCAGCCTGCAGTTAGACGAGTGTTAACATTATACTCTACTCAGATTCACTCTGCTCTGATACGATGCTCAGAGTCACATAAAAACCAGCAGAATGACACGTGAGAGGAGGAGAATCAGTTCAACCTTTCAAACATTCATCTTTTAGTTTTTCATACTGCATCATTTCACACTTACTCTACTGTGACACAGAATGTGTTgccttttaaaaagaaaaaacaacaatatttcAGTGTTCAGGTTGGAGTTTATCTCTCCAGCCCCTGCATCCTCCATCCTTTTCCTTCAACATGTTCTTCACTGAGCTTGACGTGTTTCCACCAGTTTCACCACGTTATTAACTAATTGGTTGATttgaatttataaatgtgtgatgtgtgtattgttaCAGTTGGGCTGCCAAAGTTTTAGTTAGTAAAATGCTAACTGTCTAATAAACATGGAAAATAATTAGCTCCAGCAGCTGGAGCTGAAGCGTTAAAGCTTTCTTTATCATCATGttgtaaaagtacaaaaattcAGCTGAGAAATGTGTCTATGATAAATgtagttgtttattatttgtgtacATTAAGCTCTGCTTAGTTTTTGTACACATTGTAAAGCACTGTTCTCATTTGTTCTGTATATAATTGTTAACTCtctatattactattatttctattagtagtaataatattacTGCATTTTGTCTTCACATGTTACCTTtgtaaggatttttttaatgaaaatgtgttttttactCTGCTGAGCTCTGAGAGCTGCTTATCTACTGATGTACAGTCACTTGAATAGACACTGCAAATGTACTGAATGTGAAAATGTCTTGTTGGTTTGGATcttttgtagttttatatttttgatggCACTGCAGATCCACGTGAGGAGTAGAAAAACCTCATTCAGAAGCTTCTAGAGgttttaatatacatatattatatatatatataaaatttatgcTCTTAATGTAACAGTATAATATATGACTATTGCATTGTTTTAATGAGAATGATtaaatcagggttgccagatttcagcAGAAAGctcaggactgtgtgtgtgtagtaactGTGtacctgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagactacagTCTCTTTATCACGTCAGTACTCAGCTACATTCTGTCTTCTGTCCTGTGCTTTGTGTCCAAACACATTATCCAGcttactgttttcttttattaaaataaaaataaaaccatgagAAACCTGA

Function

GO:

id name namespace
GO:0000904 cell morphogenesis involved in differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298967.1 True 2573 mRNA 0.40 6 126990 134539

Neighbor

gene id symbol gene type direction distance location
LOC117595913 NA coding downstream 4329 119182 ~ 122661 (-)
LOC117595914 NA coding downstream 10485 95456 ~ 116505 (-)
LOC113525747 NA coding downstream 35121 86459 ~ 91869 (-)
LOC113524950 NA coding downstream 46640 73680 ~ 80350 (-)
paip1 paip1 coding downstream 55506 61601 ~ 71484 (-)
LOC113528268 NA coding upstream 26481 161020 ~ 184551 (-)
LOC113528265 NA coding upstream 86890 221429 ~ 226704 (-)
mybbp1a mybbp1a coding upstream 104278 238817 ~ 254544 (-)
fgf10b NA coding upstream 122988 257527 ~ 260223 (-)
adamts12 adamts12 coding upstream 127100 261639 ~ 282406 (-)
G347634 NA non-coding downstream 92212 17440 ~ 34778 (-)
G347623 NA non-coding upstream 40484 175023 ~ 206293 (-)
G347703 NA non-coding upstream 194375 328914 ~ 329608 (-)
G347704 NA non-coding upstream 198703 333242 ~ 333755 (-)
G347672 NA non-coding upstream 219788 354327 ~ 355340 (-)
G347723 NA non-coding upstream 260828 395367 ~ 397450 (-)
G347628 NA other downstream 1784 87567 ~ 125206 (-)
G347622 NA other downstream 5879 95363 ~ 121111 (-)
G347621 NA other downstream 27328 86663 ~ 99662 (-)
LOC117595911 LOC108255570 other upstream 58010 192549 ~ 201990 (-)
LOC113528266 NA other upstream 70941 205480 ~ 210705 (-)
LOC117595925 NA other upstream 95986 230525 ~ 237272 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 229467 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 283768 418307 ~ 466255 (-)

Expression


Co-expression Network