LOC117595913


Basic Information

Item Value
gene id LOC117595913
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 119182 ~ 122661 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298968.1
atgaccctgtcgccggttcaccggttgtccttccttgttccacttttgACATGTGGAGCTACACACTTCTGTTCGGGCTGCAGATTTTCACCTTTGCTGCCACTGTGTCTGGTGAACGTTCAGTAACAGCCAAACTTCATCACCCTGCTACTCTCACCTGTGACTGGAAATGTCCTGGTTCACTCGAATGGACCCTGTTTGATAAACCAGGCAGTGTTCTGGCTCAGTGTGATCAGACATCATGCAGGTCAGAGGAGAGATTTAACATCTCTCATGATCAGTACCTGAAGGGGAATCCACATCTCACCATCACTGCAGCTGATTACAGTACGAGAGGTTTATACACGTGTCAGTGTGATGGCAAAGACGTCTGTGACGTGCGGCTCGTCATTGAGACTCAAGTGATGAGCTGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCGGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAATGAGAAGACACAGTGCAGTCCAGATTATAAAGAGAGAGCATCTCGCATCAACACTCTTCAGATTAAAGATGGAAACGTCTCTGACAGTGGCAGCTACACAGTACGGGATGTAGTGAATGATGAGACTTTGACCATTGTAAAGGTCCATATGAGAGaaGACCAGCCAGGTTCGGACATCAGGCAGGAGGGAGGTGTACCAGCGTGGGGGATTGtactgatgctgctgctgctgctggttgTAGCTGCGTTTGTGGTCCTGATGGTGATGTATGTGCGTCTGAGGAGAGAGAATCAGCAGCTCCGTAAGAAAGATGAAAACAACAGACACGAGCTGCGCCCAATGAATGGAAATGCTAACCATGATCCAGGAGAAGAGCAGGACTGAGTACACACTGAGCTTACTGAACccacaaacactgaacactattctattataataaaatctttagaatagaatagaagagCTTTATTGTGCTGCATGATCATAGTGAAAGTAAGTTTGAATTTCCTGCTGTTACATGATGGAGAATATGTCAGTAATGTAAATATAGA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298968.1 True 1084 mRNA 0.47 5 119182 122661

Neighbor

gene id symbol gene type direction distance location
LOC117595914 NA coding downstream 2677 95456 ~ 116505 (-)
LOC113525747 NA coding downstream 27313 86459 ~ 91869 (-)
LOC113524950 NA coding downstream 38832 73680 ~ 80350 (-)
paip1 paip1 coding downstream 47698 61601 ~ 71484 (-)
LOC117595912 NA coding upstream 4329 126990 ~ 134539 (-)
LOC113528268 NA coding upstream 38359 161020 ~ 184551 (-)
LOC113528265 NA coding upstream 98768 221429 ~ 226704 (-)
mybbp1a mybbp1a coding upstream 116156 238817 ~ 254544 (-)
fgf10b NA coding upstream 134866 257527 ~ 260223 (-)
G347634 NA non-coding downstream 84404 17440 ~ 34778 (-)
G347623 NA non-coding upstream 52362 175023 ~ 206293 (-)
G347703 NA non-coding upstream 206253 328914 ~ 329608 (-)
G347704 NA non-coding upstream 210581 333242 ~ 333755 (-)
G347672 NA non-coding upstream 231666 354327 ~ 355340 (-)
G347723 NA non-coding upstream 272706 395367 ~ 397450 (-)
G347621 NA other downstream 19520 86663 ~ 99662 (-)
LOC117595911 LOC108255570 other upstream 69888 192549 ~ 201990 (-)
LOC113528266 NA other upstream 82819 205480 ~ 210705 (-)
LOC117595925 NA other upstream 107864 230525 ~ 237272 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 241345 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 295646 418307 ~ 466255 (-)

Expression


Co-expression Network