LOC117595919


Basic Information

Item Value
gene id LOC117595919
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5575788 ~ 5578981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299055.1
GGACAATCGGAGAATCAGTTCTCAGGCTATAAGGAGTGCCAAGGGAAAGAGCACTCAGCAGTACAATGACAGTGACATTGTTGGAAAGTCCTTTCAAAGAATCTgctgagtttacacacttgaATCCTCTGACCATACATTACAGAAGACTTGATTCCTGAAGGATGCAGCGACATGAAGTGTGAGGTGTAATACAAGGAGCTCCTGCAATGAAGATAGTATATAAGTTGGCGCAGGGATTTCTTACTCTGAACCGCGCACCCTTTCCCCGTATTCTGCTCGCAAATGTCCAGTCCCTTGAAAACAAGATGGATGATATCAGTGTTAGAATTAAATTCCAGTGGAACTTTAGAGACTGCAACACCCTTTGTTTCCTAGAAACTTGGCTGACAACCCTCATCCCGGACCAAACAATTACACCTCTGGGGTCCTTCTCTGTTTTTCATATGGATAGGACTGTCTCAGGCAAGTACAAAGGTGGAAGAGTCTACATGTGCTATGAAGCTAGCTTCAGCCCACTGTGCAAGTGCAGCCACTCAGAGCATGGCATGACAAAGGTTCTGAAGAGGGTAAATGACAAAAACGCTGCCGTCCCTGACAGTATCTCTAGCCGCATTCTGAAATCCTGTGCTAAGCAGTTAACTGCTGTGTTTACCTCAATCTTTAACACATCTGTTGCTCGGTCTGTGGTTCTCTCATGCTACAAAATTTTCACCAATCTACCAGTGCCCAAGAACAACACATTGACATGCCTGAACAACTACCATCCTGTAGCTCTGGCGTCCGTGGTGAtgaaatgtttagaaatcttAGTGAAGGACTACATCTTCTCCGCCCTTCCCAGCTCGTTTGACCTGCTCCAGTTTGCCTCCAATCCCAACAGAGGTACAGATGAAGCCATTCTCACCAGTCGTGATTGGTCTGATCAAGAACAGTGATGAGCAGGCCTATCTGAAGCAGGTGGACAACCTAGCTCAGTGTTGCCTGGCTGATAACCTTGCACTGACTGAAGGAGGTTTTGGTGAAAGCCTTTTTTTCCAGGAAGCAGTGAGCAGGAAACTACCCACGACTAATCACTGATGGGACTGCAGTGGATAGAGTGACCAGCTTCAAATTCTTCGGTGTCCACATCACCGAAGCCCTCTCCTGGTCAATCCATACCCACAACACAATAAAGAAGGCAAGGCAATGAATTTACCATCTCAGACATCTCCGGAAGTTCAAGGTATCCTTCcacattttaaagacattttatacctGCGCAATGGAGAGTATCCTGAAGGTAACATCATTACCTGTTATGGGCACTGCTCCATTCATGACTGCCACACCCAACAGAGAGTAGTATGTTCAGCACAACATATGACCAGAACTACACTTCTCTCCCTGCCAGATACCTGCAGCAGACGTGTCACGGTGGGAGCCCTGAAAATCATCAAGGACACTTCCCACCCTAGGCACAGACTGTTCAGACTGCTGATGTCAGACAAACGCCTCTGCAGTCACATGGCCCACACTGAATGGATCAGGAGGAGCTTTTATCCACAGGCCATCAGGATCTTGAATGCCCACTACCTGGACTTCAATTACTTTGCACATGCCACTTTAGTGCACTGAACATTAGACTGTCTGCCTGCCTATGTACCTATACATACACTTTCTCTATTATGCACTAGGCTCATTGTACACCATGTAACCACTACTATTTGAACATGGCAGGATATCCCTCCTCTCCTACTTTTAGTGCCTGATCTTATTTAtcatattctttattatttttcttatttattacactCCTTtgcatttttctatattttactTGTTTACTATCTTA
>XM_034299056.1
GGACAATCGGAGAATCAGTTCTCAGGCTATAAGGAGTGCCAAGGGAAAGAGCACTCAGCAGTACAATGACAGTGACATTGTTGGAAAGTCCTTTCAAAGAATCTgctgagtttacacacttgaATCCTCTGACCATACATTACAGAAGACTTGATTCCTGAAGGATGCAGCGACATGAAGTGTGAGGTGTAATACAAGGAGCTCCTGCAATGAAGATAGTATATAAGTTGGCGCAGATCACTGGGCTGCACCGTGTCCTTACAATGGACTTGAATTTTTCCACAACCTTATTCATATGTGGGGGAGGGGGTGAGTGGGGTGCTATCCTGCATGAAGCCTGCACAGAAGCCGCTCCTGCCTTGCATGAGGCCTGCACCGAGGCTTCCCCTGTCCAGCCCAAGGCCTATGCTGGAGGATGTCGCGTCGCCAAGGATGTCACTCTGCCCCGGCTCCTTCGTGGATGTTGCTTCACCGAGAATGTCGGCCCTCCTCACTTCGCTGAGGATGATGCCCTGCCACCCGCCTTCATGGATGATGTCACCACTCTCTCTGCTCCTGACTCCGTAACTCTGCTTCCTGCTACTGATTTTGATGACAATGCCTGGAAAGCCCTTAATAAAAAATCCTCTGAGTTTATGCACTTGCATTCTGCCTCTGACCACCCGTTAGCTACTGGAATGTTATTAATTGTTCACTATAGTATCACAGTAAATTTCTGACCAATTAAAGAACACTCATGCATGCAAAGGCTCTTGAAAATTGCTGCAGTGTGAAGCCAACCTGACCAAATGAAACAGATATAAAATATCACTTCTAATGTCAACTCTAGTGCACACTTTACCAAACAAACTAGGTGTGAA
>XR_004577106.1
GGACAATCGGAGAATCAGTTCTCAGGCTATAAGGAGTGCCAAGGGAAAGAGCACTCAGCAGTACAATGACAGTGACATTGTTGGAAAGTCCTTTCAAAGAATCTgctgagtttacacacttgaATCCTCTGACCATACATTACAGAAGACTTGATTCCTGAAGGATGCAGCGACATGAAGTGTGAGGTGTAATACAAGGAGCTCCTGCAATGAAGATAGTATATAAGTTGGCGCAGGGATTTCTTACTCTGAACCGCGCACCCTTTCCCCGTATTCTGCTCGCAAATGTCCAGTCCCTTGAAAACAAGATGGATGATATCAGTGTTAGAATTAAATTCCAGTGGAACTTTAGAGACTGCAACACCCTTTGTTTCCTAGAAACTTGGCTGACAACCCTCATCCCGGACCAAACAATTACACCTCTGGGGTCCTTCTCTGTTTTTCATATGGATAGGACTGTCTCAGGCAAGTACAAAGGTGGAAGAGTCTACATGTGCTATGAAGCTAGCTTCAGCCCACTGTGCAAGTGCAGCCACTCAGAGCATGGCATGACAAAGGTTCTGAAGAGGGTAAATGACAAAAACGCTGCCGTCCCTGACAGTATCTCTAGCCGCATTCTGAAATCCTGTGCTAAGCAGTTAACTGCTGTGTTTACCTCAATCTTTAACACATCTGTTGCTCGGTCTGTGGTTCTCTCATGCTACAAAATTTTCACCAATCTACCAGTGCCCAAGAACAACACATTGACATGCCTGAACAACTACCATCCTGTAGCTCTGGCGTCCGTGGTGAtgaaatgtttagaaatcttAGTGAAGGACTACATCTTCTCCGCCCTTCCCAGCTCGTTTGACCTGCTCCAGTTTGCCTCCAATCCCAACAGAGGTACAGATGAAGCCATTCTCACCAGTCGTGATTGGTCTGATCAAGAACAGTGATGAGCAGGCCTATCTGAAGCAGGTGGACAACCTAGCTCAGTGTTGCCTGGCTGATAACCTTGCACTGACTGAAGGAGGTTTTGGTGAAAGCCTTTTTTTCCAGGAAGCAGTGAGCAGGAAACTACCCACGACTAATCACTGATGGGACTGCAGTGGATAGAGTGACCAGCTTCAAATTCTTCGGTGTCCACATCACCGAAGCCCTCTCCTGGTCAATCCATACCCACAACACAATAAAGAAGGCAAGGCAATGAATTTACCATCTCAGACATCTCCGGAAGTTCAAGATACCTGCAGCAGACGTGTCACGGTGGGAGCCCTGAAAATCATCAAGGACACTTCCCACCCTAGGCACAGACTGTTCAGACTGCTGATGTCAGACAAACGCCTCTGCAGTCACATGGCCCACACTGAATGGATCAGGAGGAGCTTTTATCCACAGGCCATCAGGATCTTGAATGCCCACTACCTGGACTTCAATTACTTTGCACATGCCACTTTAGTGCACTGAACATTAGACTGTCTGCCTGCCTATGTACCTATACATACACTTTCTCTATTATGCACTAGGCTCATTGTACACCATGTAACCACTACTATTTGAACATGGCAGGATATCCCTCCTCTCCTACTTTTAGTGCCTGATCTTATTTAtcatattctttattatttttcttatttattacactCCTTtgcatttttctatattttactTGTTTACTATCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299055.1 True 1834 mRNA 0.45 3 5576620 5578981
XM_034299056.1 False 860 mRNA 0.47 3 5575788 5578981
XR_004577106.1 False 1666 misc_RNA 0.45 4 5576620 5578981

Neighbor

gene id symbol gene type direction distance location
LOC113542489 LOC108255707 coding downstream 43473 5524146 ~ 5532315 (-)
LOC117595987 NA coding downstream 341971 5232083 ~ 5233817 (-)
kmt5ab LOC108256031 coding downstream 474294 5084057 ~ 5101494 (-)
mob1a LOC108255806,LOC107087288,LOC107739988,LOC101073635,LOC102234237,LOC107675956,LOC101160416,LOC107702973,LOC103470272 coding downstream 559373 5007202 ~ 5016415 (-)
dguok LOC108256054,LOC108438482 coding downstream 571413 5000023 ~ 5004375 (-)
cntrl cntrl coding upstream 212429 5791410 ~ 5838534 (-)
c5 c5 coding upstream 261520 5840501 ~ 5865005 (-)
prdm12b prdm12b,prdm12,LOC108255448,LOC108423597,LOC103042983,LOC107688643,LOC107731029,LOC107665021 coding upstream 286857 5865838 ~ 5870388 (-)
surf4l surf4l,LOC100304967,LOC108423697,LOC107595501,LOC107740812,LOC107688631,LOC103043297,LOC107665048 coding upstream 350170 5929151 ~ 5938345 (-)
ciz1b LOC108256061 coding upstream 364321 5943302 ~ 5953387 (-)
G349960 NA non-coding downstream 57497 5517872 ~ 5518291 (-)
G349959 NA non-coding downstream 60979 5511680 ~ 5514809 (-)
G349949 NA non-coding downstream 300713 5264852 ~ 5275075 (-)
G349844 NA non-coding downstream 435962 5139594 ~ 5139826 (-)
G349843 NA non-coding downstream 436571 5138944 ~ 5139217 (-)
G350057 NA non-coding upstream 62904 5641885 ~ 5642417 (-)
G350058 NA non-coding upstream 63460 5642441 ~ 5645072 (-)
G350061 NA non-coding upstream 81119 5660100 ~ 5660315 (-)
G350090 NA non-coding upstream 111380 5690361 ~ 5690769 (-)
LOC117595899 NA non-coding upstream 128942 5707923 ~ 5710474 (-)
LOC113542328 hectd4 other downstream 52507 5362282 ~ 5523281 (-)
G349951 NA other downstream 211506 5321513 ~ 5364282 (-)
hip1rb hip1r,LOC108255864 other downstream 248236 5248648 ~ 5327552 (-)
G349584 ung other downstream 1035957 4539283 ~ 4539831 (-)
carnmt1 carnmt1 other downstream 1371684 3882016 ~ 4204104 (-)
pappab LOC108255326,LOC108423596 other upstream 478000 6056981 ~ 6120959 (-)
LOC113542569 NA other upstream 767682 6346663 ~ 6352372 (-)
G350867 NA other upstream 1185933 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 2006491 7585472 ~ 7597962 (-)
card9 card9 other upstream 2023926 7602907 ~ 7607466 (-)

Expression


Co-expression Network