LOC117595925


Basic Information

Item Value
gene id LOC117595925
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 230525 ~ 237272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299098.1
GGCTCATTATTCACGTGCATCTTTCCGTcgttttaagtttaaaaacgCAGTAAGCCATTTTGCTTTCCATAACGGTGTAGAGCGGTCCTGTGGAATCTTCTGGaatttaggccacgcccactacacgatttgtgtatatacacaccCCCACAGCTGGCGCGTGCTCCATTCGGTGCCGGGCTCTGGGCTGATGAGCCTCATCGCATTGACTGATTTAGTTTAAAGAGTTTTGTACGCATTCTTTGaCATGAAGACCTACATGATGCTCGTGGTCCTGTTTGGGCTGATGATTGCTGCCAGCGTGTCCTCTTTGGCAGGCTTTAAGTCTACAGTAAGGAAGCTTCATCAGCCTGCTACTCTGTCCTGTGAAGGGAAATGTTCAGGTTCAGTGAAATGGACAAAGATCCAGAAGCCGAGGGGAGATGTAGTGGTGGCTCGGTGTGATCGGACGTCCTGCAGCTCCGAGGAGGGGTTTCTCGTCTCTCGTGATCAGTACCTGGAGGGGAATCTGTCTCTCACCATCACCGCAGCTGATTACAGTAGGCGTGGCTGGTACACGTGTCAGTGCGACGGCGAGGACGTCTGTTCCGTGAGTCTTCGCTTTGAGCCTGTGGAGCTGATGAAACAGATCTGTCCTGGAGATTCGCTTGTTATGGATGTTCGGATCCCTGAGCGAGCGGAGCTTGTGTTACGCAGGAGCGGTGATGATGGAGCTCGGAGCGCTGTCTCAGTTCCGCTCTGCAGCGTCGCTGGGCGGAATCTTCAGTGTGAGCCTGAATACGAGAAGAGAGTGGTGTTTAGTTGCTCGCTGACTCTGACCGCAGTGAAGGAGTCTGACAGCGGTGTGTACGCTGTGCGGGATGCTGATAACGACGAGAttatatcaacacacacactcacgctcaCGGGAAATAAGACAGATGTCAACAACACACTGCCTGCTAAAggTAAACAGGACAGCTGGAACATGAAGCACATATTCGAGGAGGAGTACAGAGGGGTCATCGTGGGACTGGTGCTGGGACTcgtgctgggtgtgtgtgtgttcggtgctgtgtgtagtgtagtgaaggGCTGCAGTTTCATCTGGAGGAAAGTGGAAAAGTGTTGGAGAGATGATCGTGATCACTTCTCACTGAATGGGAAGTTTAATCCTGTTGAAAGCATCAAACTGCGCGTGTGTGATTAATGCTCTGTAGGACAAGCTGTCGTATGTTTCCCGCTAGGAGCCGGGCATTAGCCACAATTACGTTTTACAGGGTCGCGCACACACAGCGG
>XR_004577111.1
GGCTCATTATTCACGTGCATCTTTCCGTcgttttaagtttaaaaacgCAGTAAGCCATTTTGCTTTCCATAACGGTGTAGAGCGGTCCTGTGGAATCTTCTGGaatttaggccacgcccactacacgatttgtgtatatacacaccCCCACAGCTGGCGCGTGCTCCATTCGGTGCCGGGCTCTGGGCTGATGAGCCTCATCGCATTGACTGATTTAGTTTAAAGAGTTTTGTACGCATTCTTTGaCATGAAGACCTACATGATGCTCGTGGTCCTGTTTGGGCTGATGATTGCTGCCAGCGTGTCCTCTTTGGCAGGCTTTAAGTCTACAGTAAGGAAGCTTCATCAGCCTGCTACTCTGTCCTGTGAAGGGAAATGTTCAGGTTCAGTGAAATGGACAAAGATCCAGAAGCCGAGGGGAGATGTAGTGGTGGCTCGGTGTGATCGGACGTCCTGCAGCTCCGAGGAGGGGTTTCTCGTCTCTCGTGATCAGTACCTGGAGGGGAATCTGTCTCTCACCATCACCGCAGCTGATTACAGTAGGCGTGGCTGGTACACGTGTCAGTGCGACGGCGAGGACGTCTGTTCCGTGAGTCTTCGCTTTGAGCCTGTGGAGCTGATGAAACAGATCTGTCCTGGAGATTCGCTTGTTATGGATGTTCGGATCCCTGAGCGAGCGGAGCTTGTGTTACGCAGGAGCGGTGATGATGGAGCTCGGAGCGCTGTCTCAGTTCCGCTCTGCAGCGTCGCTGGGCGGAATCTTCAGTGTGAGCCTGAATACGAGAAGAGAGTGGTGTTTAGTTGCTCGCTGACTCTGACCGCAGTGAAGGAGTCTGACAGCGGTGTGTACGCTGTGCGGGATGCTGATAACGACGAGAttatatcaacacacacactcacgctcaCGGGAAATAAGACAGATGTCAACAACACACTGCCTGCTAAAggTAAACAGGACAGCTGGAACATGAAGCACATATTCGAGGAGGAGTACAGAGGGGTCATCGTGGGACTGGTGCTGGGACTcgtgctgggtgtgtgtgtgttcggtgctgtgtgtagtgtagtgaaggGCTGCAGTTTCATCTGGAGGAAAGTGGAAAAGTGTTGGAGAGATGATCGTGATCACTTCTCACTGAATGGGAAGTTTAATCCTGTTGAAAGCATCAAACTGCGCGTGTGTGATTAATGCTCTGTAGGACAAGCTGTCGTATGTTTCCCGCTAGGAGCCGGGCATTAGCCACAATTACGTTTTACAGGGTCGCGCACACACAGagCGGGGTTACACTCGCACACACAGCGGGGTtacactcgcacacacagggctggtatacactcgcacacacagCGGGTTACACTCGCACA
>XR_004577112.1
TCTTCACACCCCTCACCAGGGTGTCTTCCTGCGTGCGATAAGGAGGATGAGTGGAAACGACGGAGGTGATCCGGGACGTTTGTGTACGCAGATGATGAACAATATTCTCTCTTCTAGAGCCGGGGTGATTTAGTTTAGCCCTACGTGTTCATGAATACATCACCTAACAAACGTGTGCTTAATTATCCACGCATGAATTCACGAGACTCGCGCCGTAGTGAAGGTTAGCTCTTCAGTACATCGTGATGTGAAGTGTTTCTCATAAAGaCATGAAGACCTACATGATGCTCGTGGTCCTGTTTGGGCTGATGATTGCTGCCAGCGTGTCCTCTTTGGCAGGCTTTAAGTCTACAGTAAGGAAGCTTCATCAGCCTGCTACTCTGTCCTGTGAAGGGAAATGTTCAGGTTCAGTGAAATGGACAAAGATCCAGAAGCCGAGGGGAGATGTAGTGGTGGCTCGGTGTGATCGGACGTCCTGCAGCTCCGAGGAGGGGTTTCTCGTCTCTCGTGATCAGTACCTGGAGGGGAATCTGTCTCTCACCATCACCGCAGCTGATTACAGTAGGCGTGGCTGGTACACGTGTCAGTGCGACGGCGAGGACGTCTGTTCCGTGAGTCTTCGCTTTGAGCCTGTGGAGCTGATGAAACAGATCTGTCCTGGAGATTCGCTTGTTATGGATGTTCGGATCCCTGAGCGAGCGGAGCTTGTGTTACGCAGGAGCGGTGATGATGGAGCTCGGAGCGCTGTCTCAGTTCCGCTCTGCAGCGTCGCTGGGCGGAATCTTCAGTGTGAGCCTGAATACGAGAAGAGAGTGGTGTTTAGTTGCTCGCTGACTCTGACCGCAGTGAAGGAGTCTGACAGCGGTGTGTACGCTGTGCGGGATGCTGATAACGACGAGAttatatcaacacacacactcacgctcaCGGGAAATAAGACAGATGTCAACAACACACTGCCTGCTAAAggTAAACAGGACAGCTGGAACATGAAGCACATATTCGAGGAGGAGTACAGAGGGGTCATCGTGGGACTGGTGCTGGGACTcgtgctgggtgtgtgtgtgttcggtgctgtgtgtagtgtagtgaaggGCTGCAGTTTCATCTGGAGGAAAGTGGAAAAGTGTTGGAGAGATGATCGTGATCACTTCTCACTGAATGGGAAGTTTAATCCTGTTGAAAGCATCAAACTGCGCGTGTGTGATTAATGCTCTGTAGGACAAGCTGTCGTATGTTTCCCGCTAGGAGCCGGGCATTAGCCACAATTACGTTTTACAGGGTCGCGCACACACAGagCGGGGTTACACTCGCACACACAGCGGGGTtacactcgcacacacagggctggtatacactcgcacacacagCGGGTTACACTCGCACA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299098.1 False 1278 mRNA 0.52 6 230732 237272
XR_004577111.1 False 1365 misc_RNA 0.52 7 230525 237272
XR_004577112.1 True 1387 misc_RNA 0.52 7 230525 236364

Neighbor

gene id symbol gene type direction distance location
LOC113528265 NA coding downstream 3821 221429 ~ 226704 (-)
LOC113528268 NA coding downstream 45974 161020 ~ 184551 (-)
LOC117595912 NA coding downstream 95986 126990 ~ 134539 (-)
LOC117595913 NA coding downstream 107864 119182 ~ 122661 (-)
LOC117595914 NA coding downstream 114020 95456 ~ 116505 (-)
mybbp1a mybbp1a coding upstream 1545 238817 ~ 254544 (-)
fgf10b NA coding upstream 20255 257527 ~ 260223 (-)
adamts12 adamts12 coding upstream 24367 261639 ~ 282406 (-)
lrp13 LOC108255551 coding upstream 136178 373450 ~ 385400 (-)
atp8b5a LOC108255417 coding upstream 203064 440336 ~ 469953 (-)
G347623 NA non-coding downstream 24232 175023 ~ 206293 (-)
G347652 NA non-coding downstream 91712 120309 ~ 138813 (-)
G347634 NA non-coding downstream 195747 17440 ~ 34778 (-)
G347703 NA non-coding upstream 91642 328914 ~ 329608 (-)
G347704 NA non-coding upstream 95970 333242 ~ 333755 (-)
G347672 NA non-coding upstream 117055 354327 ~ 355340 (-)
G347723 NA non-coding upstream 158095 395367 ~ 397450 (-)
G347753 NA non-coding upstream 290676 527948 ~ 619562 (-)
LOC113528266 NA other downstream 19820 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 28535 192549 ~ 201990 (-)
LOC117595978 NA other downstream 80719 118198 ~ 149806 (-)
G347628 NA other downstream 105319 87567 ~ 125206 (-)
G347622 NA other downstream 109414 95363 ~ 121111 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 126734 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 181035 418307 ~ 466255 (-)
LOC113527995 LOC108255428 other upstream 619508 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 682112 919384 ~ 1701550 (-)
G347960 NA other upstream 839461 1076733 ~ 1079139 (-)

Expression


Co-expression Network