pgam5 (pgam5)


Basic Information

Item Value
gene id pgam5
gene name pgam5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 652989 ~ 658898 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299168.1
GCATTTCCGTGATCGCGCGCCTCGCCGCCGGAAGTTCCGTGTTCGGTTGAGAGAATTTCCTCGGCTCTGTTTACGGTTGTGTAATTATTTGGCCGAGActttgtgtgtttagtgtgctTTAGGAAACCGGAAGTGGCAGGCGGTGATGTCTTTCCGCAGGGCGGTGAAGCTCGCGTGCGGGCTTGCGGGAGGATCTGCGGTGGTGGTCGCGTGCGCCTATGTAGCGGATAAACACCGGGAGGTTGCGCGGTTTGAGCCGGGATTCAGTGCTGTGCTTCATGCAGCTCAGCCCCCCGCTTACAGCAGCCACAGCTGGGATTATAACTGGGATAAGAGAGAGCCGTCGTCCGTGACCAACGCGAAGAGGAAAGGAAGCGTAGGAGACGAGAACGGCTCGGAGGTGGAGAATAACAAACCCACAGCCACGCGCCACCTCTTCCTCATCAGACACTCGCAGTACAACCTGAACGGCAGCGGCGACAAGGAGAAGAGGCTCACGGCTTTAGgccgTGAGCAGGCGGAGCTGACGGGGCAGAGGCTGGCGTGTCTCGGGCTGAAATACAACATACTGATCCACTCCAGCATGGCACGAGCCACAGAGACGGCTCAGATCATCAGCACACACCTGCCaggagtgGAGGTGGTGAGCTGTGATCTGCTGAGAGAAGGAGCTCCCATTGAACCTGTTCCTCCTGTCACTCACTGGAAACCTGAGGCTGTGCAGTACCACGAGGATGGCGCTCGAATCGAGGCGGCGTTCCGGCGCTACATCCACCGAGCCGACCCCAAGCAGAAGGAGGACAGCTACGAGATCATCGTCTGTCACGCTAACGTCATCCGCTATtttgtgtgcagagctCTGCAGTTTCCTCCTGAGGGCTGGCTGCGTTTGGGGCTCAATAACGGCAGCATCACGTGGCTCACCATTCGTCCGAGCGGCAGGGTGGCACTGCGGGCGCTGGGAGACTCCGGCTTCATGCCACCCGAAAAAGTGACACGCACCTGACACTCCTGATCCGCTTCTGAACCAGAACCGTCAGAATCAGAACCTCGTCTCACACACAGTAAAGCTGCGTTGGTGTTACAGAGGGgacatttcctgtttttagtGAATGTATTACTGACCACCTGATTATTAACTGATCACTGAATCAGAAGGGCAAAGTGACTCAGTACTGATTCATGATTTATATGATTCTGATTCAGTACTGATTCATCTTTGTCCTGAACTGTTCCTGATTCAGTTTCAGATTGGTTTTTTATCTGATTCAGATTCATTTCAGATCTCAAGTTTGGTTTCCATTTTGGTTCTTATTCATTGCTGATCAGATTCTGATTCACGCTATCTGATCTGATTCCGATTTTGTTctgatttagtttttattttgactcacttttCATTCTGATTCGGTTCTGATTCATTTCTAGAGTCATTCGGAGCACTCGGCACGTTCGGCTGCTTAGACCTGCATCCTGATCTGAAATTTATCACATTTGAAACGATTAAATCTCTTCAGCGCATCGTGACAGATCCGTAACTGTTAACATTCGTGTCCTGAATTCTCCTTTGCTTCACTCCTTCATGTGTTCGCGGTGTGGTGGCGTGTTTGTGGGTACAGTATTGGTGTTTTTATATTATCGTACGAGTCTGGATTAATGAAGAAGCTTTACTGGAGTAAAGCATCTGATTGTTCTTCATGAATGCAGACTCCGTTCATAAACAAAGGAAAAACCAGCAtcatgtttctatttatttattttgctttcaaaCCCGATCAGGACGAGCTGCGTTCAATAACACAGAACATcgctgttgtgtttgtgtcccAGCAGGAAATACTGACTCCtgatcagggttttttttctaaaagcgaggtgtttgatgcaaaaaaataaataaaaaaaccagaGGCCTTGATGTGGAGCCGGAGTTCTGCTCGTCTGACCCTCAATCCCAGAATTCTGTTCAGCGTAGAACTAAGAGAGAGTTAACACACGACGAGGGAAAATCACAAATCTCACGCTCCTGCCAGCGATCATTCAGTTTAGTGATGATTATTGTCTCATGTCAGTATCAGCACACACCTCAACCTTAATCCAAATGTTCTTCTGAAAGCCAGCactccatatgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtgaggtaTTATGTATGAATCAGACTCGTCAGGCAGGAGAACACGGCCGTTATTTTAATCAGTAACGTCTGTACAGTTTGTTGCATTGTTGATTTTGAGAATTCAATAAAGTGTAAATCTTCAGGTtca
>XM_034299169.1
GCATTTCCGTGATCGCGCGCCTCGCCGCCGGAAGTTCCGTGTTCGGTTGAGAGAATTTCCTCGGCTCTGTTTACGGTTGTGTAATTATTTGGCCGAGActttgtgtgtttagtgtgctTTAGGAAACCGGAAGTGGCAGGCGGTGATGTCTTTCCGCAGGGCGGTGAAGCTCGCGTGCGGGCTTGCGGGAGGATCTGCGGTGGTGGTCGCGTGCGCCTATGTAGCGGATAAACACCGGGAGGTTGCGCGGTTTGAGCCGGGATTCAGTGCTGTGCTTCATGCAGCTCAGCCCCCCGCTTACAGCAGCCACAGCTGGGATTATAACTGGGATAAGAGAGAGCCGTCGTCCGTGACCAACGCGAAGAGGAAAGGAAGCGTAGGAGACGAGAACGGCTCGGAGGTGGAGAATAACAAACCCACAGCCACGCGCCACCTCTTCCTCATCAGACACTCGCAGTACAACCTGAACGGCAGCGGCGACAAGGAGAAGAGGCTCACGGCTTTAGgccgTGAGCAGGCGGAGCTGACGGGGCAGAGGCTGGCGTGTCTCGGGCTGAAATACAACATACTGATCCACTCCAGCATGGCACGAGCCACAGAGACGGCTCAGATCATCAGCACACACCTGCCaggagtgGAGGTGGTGAGCTGTGATCTGCTGAGAGAAGGAGCTCCCATTGAACCTGTTCCTCCTGTCACTCACTGGAAACCTGAGGCTGTGTACCACGAGGATGGCGCTCGAATCGAGGCGGCGTTCCGGCGCTACATCCACCGAGCCGACCCCAAGCAGAAGGAGGACAGCTACGAGATCATCGTCTGTCACGCTAACGTCATCCGCTATtttgtgtgcagagctCTGCAGTTTCCTCCTGAGGGCTGGCTGCGTTTGGGGCTCAATAACGGCAGCATCACGTGGCTCACCATTCGTCCGAGCGGCAGGGTGGCACTGCGGGCGCTGGGAGACTCCGGCTTCATGCCACCCGAAAAAGTGACACGCACCTGACACTCCTGATCCGCTTCTGAACCAGAACCGTCAGAATCAGAACCTCGTCTCACACACAGTAAAGCTGCGTTGGTGTTACAGAGGGgacatttcctgtttttagtGAATGTATTACTGACCACCTGATTATTAACTGATCACTGAATCAGAAGGGCAAAGTGACTCAGTACTGATTCATGATTTATATGATTCTGATTCAGTACTGATTCATCTTTGTCCTGAACTGTTCCTGATTCAGTTTCAGATTGGTTTTTTATCTGATTCAGATTCATTTCAGATCTCAAGTTTGGTTTCCATTTTGGTTCTTATTCATTGCTGATCAGATTCTGATTCACGCTATCTGATCTGATTCCGATTTTGTTctgatttagtttttattttgactcacttttCATTCTGATTCGGTTCTGATTCATTTCTAGAGTCATTCGGAGCACTCGGCACGTTCGGCTGCTTAGACCTGCATCCTGATCTGAAATTTATCACATTTGAAACGATTAAATCTCTTCAGCGCATCGTGACAGATCCGTAACTGTTAACATTCGTGTCCTGAATTCTCCTTTGCTTCACTCCTTCATGTGTTCGCGGTGTGGTGGCGTGTTTGTGGGTACAGTATTGGTGTTTTTATATTATCGTACGAGTCTGGATTAATGAAGAAGCTTTACTGGAGTAAAGCATCTGATTGTTCTTCATGAATGCAGACTCCGTTCATAAACAAAGGAAAAACCAGCAtcatgtttctatttatttattttgctttcaaaCCCGATCAGGACGAGCTGCGTTCAATAACACAGAACATcgctgttgtgtttgtgtcccAGCAGGAAATACTGACTCCtgatcagggttttttttctaaaagcgaggtgtttgatgcaaaaaaataaataaaaaaaccagaGGCCTTGATGTGGAGCCGGAGTTCTGCTCGTCTGACCCTCAATCCCAGAATTCTGTTCAGCGTAGAACTAAGAGAGAGTTAACACACGACGAGGGAAAATCACAAATCTCACGCTCCTGCCAGCGATCATTCAGTTTAGTGATGATTATTGTCTCATGTCAGTATCAGCACACACCTCAACCTTAATCCAAATGTTCTTCTGAAAGCCAGCactccatatgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtgaggtaTTATGTATGAATCAGACTCGTCAGGCAGGAGAACACGGCCGTTATTTTAATCAGTAACGTCTGTACAGTTTGTTGCATTGTTGATTTTGAGAATTCAATAAAGTGTAAATCTTCAGGTtca

Function

symbol description
pgam5 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in peptidyl-threonine dephosphorylation and positive regulation of mitochondrial fission. Predicted to act upstream of or within programmed cell death. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human PGAM5 (PGAM family member 5, mitochondrial serine/threonine protein phosphatase).

NR:

description
PREDICTED: serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15637 PGAM5; serine/threonine-protein phosphatase PGAM5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299168.1 True 2291 mRNA 0.48 6 652989 658898
XM_034299169.1 False 2288 mRNA 0.48 6 652989 658898

Neighbor

gene id symbol gene type direction distance location
LOC113528517 LOC108255548 coding downstream 75553 523807 ~ 577436 (-)
LOC113528156 LOC108255548 coding downstream 136717 475494 ~ 516272 (-)
atp8b5a LOC108255417 coding downstream 183036 440336 ~ 469953 (-)
lrp13 LOC108255551 coding downstream 267589 373450 ~ 385400 (-)
adamts12 adamts12 coding downstream 370583 261639 ~ 282406 (-)
LOC113528030 LOC108255642 coding upstream 178663 837561 ~ 844476 (-)
tal2 LOC108255450 coding upstream 190488 849386 ~ 851691 (-)
LOC113524993 NA coding upstream 268211 927109 ~ 1240090 (-)
foxn4 foxn4,LOC107654613 coding upstream 318050 976948 ~ 980689 (-)
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding upstream 346742 1005640 ~ 1009594 (-)
G347821 NA non-coding downstream 9502 642986 ~ 643487 (-)
G347759 NA non-coding downstream 14709 634759 ~ 638280 (-)
G347753 NA non-coding downstream 33427 527948 ~ 619562 (-)
G347723 NA non-coding downstream 255539 395367 ~ 397450 (-)
G347672 NA non-coding downstream 297649 354327 ~ 355340 (-)
G347833 NA non-coding upstream 14179 673077 ~ 676630 (-)
G347847 ier3 non-coding upstream 49656 708554 ~ 715445 (-)
G347859 NA non-coding upstream 83919 742817 ~ 746935 (-)
G347864 NA non-coding upstream 98135 757033 ~ 757336 (-)
G347866 NA non-coding upstream 104425 763323 ~ 765368 (-)
rusc2 rusc2,LOC108255549 other downstream 186734 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 285250 364006 ~ 367739 (-)
LOC117595925 NA other downstream 415717 230525 ~ 237272 (-)
LOC113528266 NA other downstream 442284 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 450999 192549 ~ 201990 (-)
LOC113527995 LOC108255428 other upstream 197882 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 260486 919384 ~ 1701550 (-)
G347960 NA other upstream 417835 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 609411 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 697670 1356568 ~ 1369462 (-)

Expression


Co-expression Network