ppil2 (ppil2)


Basic Information

Item Value
gene id ppil2
gene name ppil2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 15098554 ~ 15141215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299201.1
ACGCTGTTCCACACGGACACATTTAACCGTCGAACAGCTTGCAAACTATTAGTTCCGGAAGTGGAgtgtgtttgactttttttttaccctaaGAAATTGTGCATTTGTTTGTTAGATTTTGAGCATATTGTCCTAAAAATGGGGAAACGACAGCACCAAAAAGATAAGATGTACATCACCTGTGCAGAGTACACTAATTTCTATGGAGGGAAGAAGGCAGaaattccCCAGGCCAATTTCAGGAGATTGCCCTTTGACCATTGCAGTTTGTCTCTTCAGCCGTTTGAGTATCCGATGTGCACTGAAGAAGGTGTGGTGTTTGACCTCATGAGCATAGTTCCCTGGATTAAGAAGTTTGGAACGAACCCCATCTCAGGAGAGAAACTCGAGGCCAAGTCCCTCATCAAGCTCAACTTCAGCAAGAACAGCGAAGgaAAGTACCACTGCCCCGTTCTGTACAGCGTCTTCACTAACAACTCGCACATCGTAGCCAACAAAGTCACTGGCAACGTCTTCTCTTACGAGGCTGTAGAGCAGCTCAACTTCAAGACAAAGAGCTACAAAGATCTGCTGACTGATGAGCCGTTTACTCGCCGGGATATCATCACGTTGCAGGACCCAACCAATTTGGATAAATTCAACGTCTCAGATTTTTTCCATgtgaaaaacaacatgaaagtTTTGGATCCAGACGAGGAGAAAGCAAAGCAGGACCCGGCGTATCACCTGAAGAGCACGAACCTGGAGACACGCGAGACTCTGGCCGAGCTCTATAAGGAGTATAAGGGTGATGAGCTGCTGGCTTCTACCATGAAGGAGCCCGAGGCCAAGAAAACCGACAAATTCAATGCGgctcATTACTCCACAGGTCGAGTGTCTGCCTCCTTCACCTCCACTGCTATGACTCCAGCCACCATACATGAAGCAGacgCTATCGCAGATGACGCAGTGCGCTACCAGTACGTGAAGAAGAAAGGCTACGTCCGCCTCCACACCAACAAAGGAGACCTGAACCTGGAGCTGCACTGTGataagGTTCCCAAAGCTGGTGAGAACTTCATAAAGCTGTGTAAGAAAGGCTACTATGATGGCACCATCTTTCACCGCTCCATTAGAAACTTCATGATTCAGGGAGGAGACCCGACAGGCACTGGTACAGgtgGTGAGTCGTTCTGGGGTAAGCCATTTAAGGATGAGTTCAAGCCCAATTTGTCACACACCGGCCGTGGCGTGCTCAGCATGGCCAACTCTGGGCCCAACACCAACAAATCTCAGTTctttatAACTTTCAGGTCGTGCACATACCTGGACCGAAAACACACCGTATTTGGCAGAGTGGTGGGTGGATTTGAGACCCTCACAGCCATGGAGAACGTGGAGAGCGACCCTAAAACAGATAAACCCAAGACTGAGATTAAGCTGATAAGCACTACTGTGTTTGTGGATCCTTATGAGGAGGCAGATGCCcagattGCAGCTGAGCGGGAGAAGGAGGTTCAGAAGCAGGAGGAAGAAAGAGCCCAAACCTCAGCATCGCTCGGCAAAGCTAAAACTGAACAAGAGCCCAAAACTTACCGACCCGGGGTGGGCAAATATATCAACATGGCTACCACTAAGCGCTCAGCAGCCGACGAGGACAGCAAACCATCCAGCAGTGAAACAGCAGCTAAGAAGCCTAAAGGCAGGACAGGATTTGGAGACTTCAGCTCCTGGTAAAGCCGCTTTTCTCTGGTGGAACATCACTGTACTCTGTTCtgaacaaaatacattttaacatccAATCAGATACCTATGTTTGAACGTAACAGTACTATGGACTCGGTCATGGCTGTTAAAGTACCTGCAATCtcttaaaaattgttttatcactgtatcaatattatattatcatattgcCCTGCTCTGGTTTGATGTACAATTTAGTtctcctgtttattttttttttcttgctactTTGTAAAATACTTCCTACAATATCTTTTGTTCTCCATTTCAGGAATATGTTCATTTCACAATGTccactgatgtattttatgcaATAAATCAGCTTTTCTAAA

Function

symbol description
ppil2 Predicted to enable peptidyl-prolyl cis-trans isomerase activity and ubiquitin-ubiquitin ligase activity. Predicted to be involved in protein peptidyl-prolyl isomerization and protein polyubiquitination. Predicted to act upstream of or within protein folding and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human PPIL2 (peptidylprolyl isomerase like 2).

NR:

description
peptidyl-prolyl cis-trans isomerase-like 2

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K10598 PPIL2, CYC4, CHP60; peptidyl-prolyl cis-trans isomerase-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299201.1 True 2057 mRNA 0.46 20 15098554 15141215

Neighbor

gene id symbol gene type direction distance location
ydjc ydjc coding downstream 160782 14931813 ~ 14937772 (-)
ccl19a.1 NA coding downstream 192554 14904207 ~ 14906000 (-)
tctn2 tctn2 coding downstream 195280 14888382 ~ 14903274 (-)
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding downstream 212493 14866164 ~ 14886061 (-)
LOC113537027 cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 coding downstream 235982 14829205 ~ 14862572 (-)
gal3st1a gal3st1,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding upstream 2970 15144185 ~ 15158018 (-)
pes pes1 coding upstream 20808 15162023 ~ 15177372 (-)
pole pole,LOC107668756 coding upstream 51443 15192658 ~ 15225173 (-)
si:dkey-98f17.5 si:dkey-98f17.5,LOC108255717,LOC108431725,LOC107755832,LOC107668759,LOC107599615,LOC106580116 coding upstream 149784 15290999 ~ 15311616 (-)
rfc5 rfc5,LOC107668751,LOC107716544,LOC107704514 coding upstream 196269 15337484 ~ 15345795 (-)
G355726 NA non-coding downstream 24361 15042305 ~ 15074193 (-)
G355728 NA non-coding downstream 42768 15049450 ~ 15055786 (-)
G355732 NA non-coding downstream 72238 14949535 ~ 15026316 (-)
LOC117595933 NA non-coding downstream 127337 14969358 ~ 14971217 (-)
G355725 NA non-coding downstream 143740 14953216 ~ 14954814 (-)
G355848 NA non-coding upstream 183272 15324487 ~ 15380675 (-)
G355916 NA non-coding upstream 378860 15520075 ~ 15523463 (-)
G356143 NA non-coding upstream 658334 15799549 ~ 15800119 (-)
G356142 NA non-coding upstream 660570 15801785 ~ 15801940 (-)
G356211 NA non-coding upstream 772650 15913865 ~ 15914335 (-)
ccl19a.2 NA other downstream 173895 14908796 ~ 14924659 (-)
mrpl41 mrpl41 other downstream 1373696 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4349716 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4581349 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4686868 10370162 ~ 10411686 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 439255 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 691838 15833053 ~ 15841684 (-)
G356331 NA other upstream 998574 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1273474 16414689 ~ 16442957 (-)
si:ch211-102c2.8 LOC108255971 other upstream 1323212 16464427 ~ 16478840 (-)

Expression


Co-expression Network