LOC117595953 (mvk)


Basic Information

Item Value
gene id LOC117595953
gene name mvk
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1251870 ~ 1257942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299263.1
actgaGCGGCGGGTTTTACTTCTTATTCAGTGTTTGAGGAagtcagagagtcagagaggCTCTCAGGCAGAAAATGATGGAACTTATctactttttatttgtgttattttaatcCCGCGtggttttatatatgtataaatgtatttttaggaTTAATTCGCTACATGGACGGTTGTCTTGTAAACCGAACTTATACGGATAgtgattaattttgttttacGACCCGTATTAGGGGTTTAGGATTGATTAGGATTTTGGCGGAATGTGGGTGGGTTTTTAACGCCTGACATGGCGCCTGTTCAGGAGTGTTTCATTTCAGCTCCTGGGAAATGCATCCTGCACGGAGAGCATGCTGTAGTGCACGGGAAGGTTGCGTTGGCTGTGAGCTTGAACCTGCGCACGTATCTGCGGCTGCAGGTCACGTCTACAGCTGAAGTGTCCATCAGTCTGCCCAACATCGACACGTTCCTGAGCTGGGACGTCAGTGTGCTGAAACCGCTTCTGTCTCACTGTAAAGGTGAGTGTAGGAGCTCTACAGAGCTGGACACGGAGCTCGTGAGGAAGCTGAGGGAATTTACAGCCATCGCTGATGGATCCACAGACACCAGGAGCATGGCGGTGCTGGCCTTCCTCTACACCTACCTGTGTGTGTTCGCCCACTCCGAAGTCCTGCCCagtctgaaggtgtgtgtgtggtctgagcTGCCTACAGGAGCAGGTTTGGGCTCCAGCGctgcatacagtgtgtgtgtctctgctgctCTGCTCGCCGCCAGAGGAACCATCAGCTCTCCTCTCACACAGAGCCAGGAGACAGccaggtggagTGAACAGGAACTGGAGCTGATCAATAACTGGGCGTTTCAGGGTGAAAAGATCATACATGGCAACCCGTCAGGAGTAGACAACGCTGTGGGAACGTGGGGGGGCTTTCTGCGGTACCATGCTGGGAAAATTACGCCACTGAGCAGaGTGCCCACACTGAGGATACTTCTCACCAACACTAAAAAGTACCACGCAGTACCAAACTCCTCGTTCCCGAAAGTGAAGGACAGAATTAACCAGTACCCGTCTGTGATGGCACCCGTGCTGGAGTCAGTGGATGCTGTGTCACAAATCTGTGAGCGCACACTTGCTGAGATGGCTACAGAGGGAGCTTCAGCCAAACACTACAGCACGCTGGAGGATTTAATAGACATCAACCAGCACCACCTGAACGTGATGGGCGTCAGTCACACGTCTCTGAACACGCTGTGCCAGGTCACACTCACCCACGGCCTTCACAGCAAACTGACTGGAGCTGGGGGAGGAGGCTGCGCCATCACACTGCTCACGCCAGAGACAGGCGAGTCCGTGGTGCGAGGCGTGGTGGAGGAGCTGAAGCAGGTCGGATTTGACTGCTGGGAGGCAGTATCGGCGCCGGGTGTCCTGATGCACTCGCCcacctcactgacacacagcGTCCTCGACATCCTCACCAAATACTGACGatctactgaacacacacacacacacactacagaagaACATTATAGCCATACTAACAGTATTATATATGTTACCTGTGATTACAGCACtgatgaagaacagagtggaCACACATTTCACCACTATAGATAAGATACAAAAATGACATCATCCTCCAGATTTAGCTTGCTAGCTGTGTTTTTAGATAAACATCATAGCTAGCTGGATAGCTAATACAGTGTGGGATCTCTTacttatttaaactttaaatttcaaaataaataagatcTTTGGTTTA

Function

symbol description
mvk Predicted to enable mevalonate kinase activity. Predicted to be involved in cholesterol biosynthetic process and isopentenyl diphosphate biosynthetic process, mevalonate pathway. Predicted to act upstream of or within isoprenoid biosynthetic process; phosphorylation; and sterol metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in liver. Human ortholog(s) of this gene implicated in lipid metabolism disorder; mevalonic aciduria; and porokeratosis. Orthologous to human MVK (mevalonate kinase).

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004496 mevalonate kinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299263.1 True 1765 mRNA 0.50 10 1251870 1257942

Neighbor

gene id symbol gene type direction distance location
LOC113524993 NA coding downstream 11780 927109 ~ 1240090 (-)
LOC117595980 NA coding downstream 11821 1236871 ~ 1240049 (-)
tchp tchp coding downstream 21222 1188924 ~ 1230648 (-)
LOC117595672 mmab coding downstream 143222 1086342 ~ 1108648 (-)
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding downstream 242276 1005640 ~ 1009594 (-)
LOC117595981 NA coding upstream 35932 1293874 ~ 1297808 (-)
LOC113528146 NA coding upstream 56557 1314499 ~ 1316387 (-)
LOC113524983 NA coding upstream 92374 1350316 ~ 1420706 (-)
LOC113524989 NA coding upstream 167157 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 175064 1433006 ~ 1442192 (-)
G348003 NA non-coding downstream 20029 1231235 ~ 1231841 (-)
G347980 fam222a non-coding downstream 74700 1174117 ~ 1177170 (-)
G347963 NA non-coding downstream 148986 1083752 ~ 1102884 (-)
G347955 NA non-coding downstream 213673 1036539 ~ 1038197 (-)
LOC117595934 NA non-coding downstream 414532 830810 ~ 837338 (-)
LOC117595969 NA non-coding upstream 6863 1264805 ~ 1284995 (-)
LOC117595965 NA non-coding upstream 51747 1309689 ~ 1311494 (-)
LOC113524984 NA non-coding upstream 80866 1338808 ~ 1339841 (-)
G348011 NA non-coding upstream 143914 1401856 ~ 1402831 (-)
G348012 NA non-coding upstream 151019 1408961 ~ 1463632 (-)
G347960 NA other downstream 172731 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 327203 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 785615 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 884131 364006 ~ 367739 (-)
LOC117595925 NA other downstream 1014598 230525 ~ 237272 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 10367 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 98626 1356568 ~ 1369462 (-)
LOC117595719 NA other upstream 192393 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 247697 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 569956 1827898 ~ 1828645 (-)

Expression


Co-expression Network