LOC113528310


Basic Information

Item Value
gene id LOC113528310
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1433006 ~ 1442192 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299283.1
attattattattttgttagtgtgtttgtgtgtttattgtgtgtttatagtgtgagagtgtgcagtgagagatGGCTCGTGCAGTTCTGAAAGCTCTGATTTTCCTCACAGtttctcttcatctttcatCAGCAGtcacacactccATGCAGTACTTCTACACTGGAGTTACACCTGGAATAAATTTCCCAGAATTCACTCTTGTGGGTCAGGTGGATGGACAGCAGATTGTGTTCTACGACAGTAACATCAGGAAAGTGACCCCGAAGACGGAGTGGATACAGAAGGTCAACGCTGACGATCCAGATTACTGgagcagagagacacagaatgCGCAGCGTCAACAGGAGAACTTCAAAGCCAATGTGGCTACAGCAATGCAGCGCTTTAATCATACTAAAGgagttcACACAGTGCAGGTGATGTACAGTTGTGAGCTCGATGATGACGGCACCACTAGAGGATACAGTCAGTTCGGTTATGATGGAGAAGATTTCATCAGTCTGGATCTGAAAACTCTCACCTGGACTGCAGCTAAACCTCAAGCTGTGATCAGCAAACACAAGTGGGATAATAATCCTGGTGCTACTGTGGGCCAGAAGATCTACCTGGAGAACACCTGTATCGAGTGGATAAAGAAGTATGTGTCTTACAGCAGAGAGACTCTGGAGAGGAAAGttcGTCCCGAGGCATCAGTGTTCCAGAAACACTCTCCTTCTGCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGGTGATCTCCTGGCAGAAGGACGGAGAGGAGCTGCAGGAGGACGTGGAGCTCAGAGAGACGTTACCCAACCAGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAGAGGTGGAGCACCGGTTGCTATCATCGTTGGTGTAGTCGCGGCTCTCGTTGCTCTCGTTGCCGTTGTTGCTGGAATTGTGGtctggaagaagaagaactctgGCTTCAGACCTGTTAAACCCAAAACCCCCTCTGAAGAAGATTTACTCCCAACAACTtagtgtgactgtgtgtcttcctgctgaactgagagagagagaggaggagaggaagaggaggaccgcacacacacacacacacacaaagcaacacAGTAGTTGCTTTGGCCAGACCAaatgtttttgctgtctctctgatgaGTTTGTTTTGATTGTTCACCCAATGATGGCTtgtttcactggcagtgacagctgtttggacttcatattgagagttaacagaaAAAGAtcccaaatgcaaatgccacaatTGCAAACAACTCCAGATCTTGTATCTACTTACTTGTaggtgaaataatgagggaataacacacaccaggCCCTGGAATAGCCGAGGAGCCGATTGTCCAATTGCTTTTGTTcccttaaatataaaacataaacagtGCTGTATACCACATACAGTCAcgggaaaaagaaagagcaccctccttcaattctacgtttttatttatcagggcctaacaattgtgtggtcctcaccaaatctataaacattttttgatgacaaaaaaagacaacagatttcaatatgtattaattttatcctaaaatgtaaattaatattcAGAAACCAGATgggaaataaataagtacaccctataattcagggACATGTAGAATGACCTTTAGCAGCAATAACtttgagtaaatgttttctgtaggagtttagcAGTCCTCACATCGTAGCAGTCAAATTCTCacccactctttttttttacagcattgttcattgttcattgttgtttgagggcattcatttatgcacagctctcttttGAACTCagcaatggggttgaggtcatcagtccaaaggatattacTCCAGAACGTTTGCAgcttgttcagatgcaattacAACCCTAAGTCTAATGCTCCGTATTCTTTTTGGACTTAGGAAAAACTTTTTCCTAACCACCCTTCCGTGAAAGCCATACTTATTCAGTCTTTTTCAACAAGCTCTGACTCAGTGGCCAGCAGTGATGACATGTTGAGTCTTCTTTGGTCCATTTTTAGTTTGATGTTCATTGATCATTCTCTGATTTCTTCTGGTTTTTCATCAGTCCACTTACTGTGGGTTTaaacactcactgagcactttattaggaacacttaaTGTACACCTACTCAATCATGCAACTATCTAATCAATTGTGCGGCAGCAGTGgaatgcagaaaatcatgcaggtacagaccagcagctttgggtaatgttcacatcaaacatcagaatggtgaaaaagatctcagtgatttcagtgattttgaaCATGGCATGATCAGGGGTGCCAGacgtgctggtttgagtatttctataactgctgaactcctgggattttcacacacaacatttctTTAGAGTTACACAAAATggggtgaaaaataaaaaaacattgattGAGGGACA

Function

GO: NA

KEGG:

id description
K06751 MHC1; MHC class I antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299283.1 True 2519 mRNA 0.43 8 1433006 1442192

Neighbor

gene id symbol gene type direction distance location
LOC113524989 NA coding downstream 1525 1425099 ~ 1431481 (-)
LOC113524983 NA coding downstream 12300 1350316 ~ 1420706 (-)
LOC113528146 NA coding downstream 116619 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 135198 1293874 ~ 1297808 (-)
LOC117595953 mvk coding downstream 175064 1251870 ~ 1257942 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 93403 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 444460 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 450076 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 458967 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 509437 1951629 ~ 1968139 (-)
G348011 NA non-coding downstream 30175 1401856 ~ 1402831 (-)
LOC113524984 NA non-coding downstream 93165 1338808 ~ 1339841 (-)
G348001 NA non-coding downstream 98069 1227126 ~ 1334937 (-)
LOC117595965 NA non-coding downstream 121512 1309689 ~ 1311494 (-)
LOC117595969 NA non-coding downstream 148011 1264805 ~ 1284995 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 54218 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 140528 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 156278 1598470 ~ 1598542 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding upstream 189999 1632191 ~ 1638134 (-)
G348067 NA non-coding upstream 250951 1693143 ~ 1795534 (-)
LOC113524988 NA other downstream 63544 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 154139 1268309 ~ 1278867 (-)
G347960 NA other downstream 353867 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 508339 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 966751 418307 ~ 466255 (-)
LOC117595719 NA other upstream 8143 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 63447 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 385706 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 539862 1982054 ~ 2127645 (-)
G348145 NA other upstream 553710 1995902 ~ 1998470 (-)

Expression


Co-expression Network