cmlc1 (cmlc1,LOC107374630,LOC108230875,LOC103473836)


Basic Information

Item Value
gene id cmlc1
gene name cmlc1,LOC107374630,LOC108230875,LOC103473836
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6160872 ~ 6161633 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299318.1
TCTTACAGCTTGATCTTCACTCCCATCTCCTGACTCCTGGCTGTAAGCGTGAGGAACATGGCCCCGAAAAAAATTGAACCCAAGAAACCAGAACCCAAAAAACCTGAGCCTAAGAAGGAAGAGACTccagctcctgctcctgctccagtCCAGGAGGAGCCGAAAGAGCCTCAGATTGATCTGAAGAGTATTGTATTGGAGTTCTCTCCAGACCAGATTGAGGAGTTCAGAGATGCCTTCACTTTATTCGATGAGACACCAACAGGAGAGATGAAAATAAGATTTGCCCAGTGTGGAGACGTGATGAGGGCTTTGGGTTATAACCCCACTAATGCTGACGTGCATGCTGTTCTAGGGAAGCCCAAGGCAGAGGAAATGAACAGCAAGATGCTGGACTTTGAGACCTTCCTCCCTATGCTGCAGCACATCTCAAGGGCAAAGGACCAGGGTACATTTGAGGACTTTGTGGAAGGGCTTAGGGTTTTTGACAAGGAAGGCAATGGTACAGTGATGGGTGCTGAGCTCCGCCACGTTCTGGCAACTCTGGGAGAGAGAATGACTGAAGACGAGGTGGACCGCCTCATGACGGGACAAGAGGATTCAAATGGTTGCATCAACTATATCTCATTCGTCAAGCATATCCTCTCTGGGTGAGCTGGAGTCTGTCCTTGTGTGACTCTAAAGACATCAGCATTCAAAGGACATTTAGAAGGAAAAGTGGAAATtgttgaatttaaaataaagctgatttCTCAACtgtca

Function

symbol description
cmlc1 Predicted to enable calcium ion binding activity. Acts upstream of or within heart contraction; heart morphogenesis; and myofibril assembly. Is expressed in heart primordium; mesoderm; pericardial region; and somite. Human ortholog(s) of this gene implicated in cardiomyopathy and familial atrial fibrillation. Orthologous to human MYL4 (myosin light chain 4).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0055005 ventricular cardiac myofibril assembly biological_process
GO:0045214 sarcomere organization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060047 heart contraction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299318.1 True 762 mRNA 0.47 1 6160872 6161633

Neighbor

gene id symbol gene type direction distance location
ciz1b LOC108256061 coding downstream 207485 5943302 ~ 5953387 (-)
surf4l surf4l,LOC100304967,LOC108423697,LOC107595501,LOC107740812,LOC107688631,LOC103043297,LOC107665048 coding downstream 222527 5929151 ~ 5938345 (-)
prdm12b prdm12b,prdm12,LOC108255448,LOC108423597,LOC103042983,LOC107688643,LOC107731029,LOC107665021 coding downstream 290484 5865838 ~ 5870388 (-)
c5 c5 coding downstream 295867 5840501 ~ 5865005 (-)
cntrl cntrl coding downstream 322338 5791410 ~ 5838534 (-)
ak5l ak5l,LOC108255392,LOC108423692,LOC107595531,LOC107731024,LOC107665022,LOC107740835 coding upstream 3134 6164767 ~ 6172156 (-)
gpsm1a LOC108255912,LOC108423595,LOC107595532,LOC107665019 coding upstream 10671 6172304 ~ 6175635 (-)
LOC113542600 LOC108255798 coding upstream 57172 6218805 ~ 6230283 (-)
fam78aa fam78aa,LOC108255801,LOC108423592,LOC107740833,LOC107731022,LOC107552624 coding upstream 74487 6236120 ~ 6239812 (-)
brd3b LOC108255802,LOC107665032,LOC107740804 coding upstream 89298 6250931 ~ 6267587 (-)
LOC117595975 NA non-coding downstream 219040 5938466 ~ 5941832 (-)
G350114 NA non-coding downstream 430152 5730462 ~ 5730720 (-)
LOC117595899 NA non-coding downstream 450398 5707923 ~ 5710474 (-)
G350090 NA non-coding downstream 470103 5690361 ~ 5690769 (-)
G350061 NA non-coding downstream 500557 5660100 ~ 5660315 (-)
G350513 NA non-coding upstream 147499 6309132 ~ 6310450 (-)
LOC117595904 NA non-coding upstream 221471 6383104 ~ 6388571 (-)
G350664 NA non-coding upstream 533222 6694855 ~ 6695063 (-)
G350714 NA non-coding upstream 580760 6742393 ~ 6742602 (-)
LOC113537000 NA non-coding upstream 740660 6902293 ~ 6914343 (-)
pappab LOC108255326,LOC108423596 other downstream 39913 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 581891 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 637591 5362282 ~ 5523281 (-)
G349951 NA other downstream 796590 5321513 ~ 5364282 (-)
hip1rb hip1r,LOC108255864 other downstream 833320 5248648 ~ 5327552 (-)
LOC113542569 NA other upstream 185030 6346663 ~ 6352372 (-)
G350867 NA other upstream 603281 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 1423839 7585472 ~ 7597962 (-)
card9 card9 other upstream 1441274 7602907 ~ 7607466 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 2392014 8553647 ~ 8556676 (-)

Expression


Co-expression Network