mybbp1a (mybbp1a)


Basic Information

Item Value
gene id mybbp1a
gene name mybbp1a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 238817 ~ 254544 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299336.1
TACTGTGCTACTCTtcacgtgtgtgtctgtgtgtgtgcatgtgtgtgtcccGCAGTGCTGGTGGATGTAGGCATGCAGACAGCAGTCATGGGGGAGATGAAGATGGAGACAGAGACGGAACCGGTTCGGCCCAGAGTGACGGTGACGGACAGTAGAGGCGTGCTGAAGCAGAACCGCGAGTTCCTCGATTATTTCTGGGACATCGCCAAACCGGAGCGCGAGACCCGCCTGAGGGCCGTGGAGAAGCTCATAGAGCACGTGAAGAAGAGCGAGCAGtcTGATGAGCTGAAATACACACTGAAGAGACTGGTAGATGGACTGTGTCACGCTCGAGAGGAGGCTCGCACCGGCTACAGCTTAGCACTagcacagGTGCTGAGTGTGTTTGAGGAGATCACACTTAGAAGCATGTTGGATCAGATCAGAGAGAAACACAACCTGCAGACGGCCAGCaagAAGCAGATCAAACACGTGGCCTTCGGGAATTTCTTTGGAGTTCTCGCTTTGTCTCAGTCCACACGCCTgcacaaggaagcaGACGTGCTGTTGGAGTGTGTGAAGCTgctgcagtctctctctcagtacagAGAATATCTGAGAGATTTACCCAGGAAGACCATGGCAGACATCCTCAACGAGgtgtcgGAGCAGATGTTTGAGCAGGTGTTGTTCAGCGCTCTGCAGGAGGATCTGAGTTCAGCTCTCAGTAGTCCGGAGCAGTTAGAGCTCCTCCTGCTGGTCATGCGCAGATTCTCATCCACGCTTAGCTCCGCCCACCTGGACAAGCTGCTGGGGACCGCCTCCATCATCAACGCATACACACTGCcccggttagTAGAGGTGGTGAAGACAGCAGCGCGCTCGGTGaagaaggagtgtgtgttgccAGCTGTAGCATCTGATCTGCTGCACGTGTCTCTGCGTGAGGACAGCTTCACATTCTTCTGGGACAAAGTGGTGATTGATGGACTGTTCTCAGACCCACCCGGCCCCAGCCAttacCTGGCGTTCAGGTTGATGGGCGTGTCCTTGCCGTTGTTGTCTGTGTCTCAGCTGCAGTATGTTCTGAGTGGAGAGGTGATGATACGTTACGGTGAACATGTCATGACTGCACAGctgccCGAGCGCTTTAAGTTCTCCCCGGAgatggatgagtgtgtgagtgtgttcctgCGCAGCTGCAGTGATGTGGAGAAACAGCTGTTGGTCCTGCAGGCGTTCAGTCGGCTCGCGCACCGCGGCGCTCCCGTCGTCCCGTCCTTCTGGAAGGTTCTGGAACACGTGGAACCCAGCGCTCTCAAAACCTACACACGCTGGCTCAAAGAGTCGTTCTGTCAGCCCAAGATCCCCGAGCTGCTCGAGTTCAGCACACGCAAACAGAGACGGAGCCAAGACCCCGCCCCCGACTCCGCCCCTCAGACTGAGGAGTGTGTGCTGCGTTTGCGGAAGTGGATCATCCCCCGTCTCGCCTGCATCGTGGAGAACCATCAGATTAAAAAAGATGAGGAGCTCGTTATGGAGATTGCcaggtttatcTTCTTCCATGCGTTCTTCGACACAGTGAAGTCCACAGCTGAAATCCCGGAGACTCAGCGCAAACTCTCACCTCCTCTAGACCAGAACACACGCAACATCGCCGGCTCCACCTTCTTCAGatgtctctctgtctctgtcactctcagCACAGAGCACACAGAGGCTTGGGAcagcatgcTGCAGTCGGTCGAGTCTCTCAGTAAGAAGATGAAGAAATCTGCAGCTCCTGAACACTCAGCATTCCAGCACCTCTTCCTCATCATTGGCATCCAGATGTTCAAggctccAGATGACAGTGTGGAGTTGCTGAATGATCTGAGGAGCTGTATGGAGCAAGCACAGGCCAAAAAAtccaagaagaagaagcagaagaagagtGGTGCAGacggCGAGCAGCCGGAGGGGGCGGAGCCTCACtgggtggaggtggtggtggacATCCTGCTGTCTCTACTCGCTCAGCCCAGCCGTCTCATCCGCAGTGTGTGTAAGACTGCGTTCAGCCGAGTGTGTCCTTATCTCACACAGCCTGCACTCACCGCTATACTGaatGTTCTGGACCCGAGTAAGGACGATGAGGAGAGCGGCGTGCTGGTGACGGACGacaatggagagaaaaagaaaaagagaacacaggaagaggaggaggaagagggagatGAAGAACAGGAAGCAGAGGATGAAGAGGAATCTGACTCCTCAGacaatgatgaaaatgatgaaaatgatgaagatgaagagatggaggaagaggaggaggaagaggaagtggaTCAGAATTTCCGTCTGGAGCTGATGAAGGTGTTGCAGGGACAGAACGCTCTGGCCACTGAGGAGGATGGCAGCGAGGACGAGGAGCTGGACGACGAGGCCATGATGAAGTTGGATAAAAACCTGGAGGCTCTGTTCGGAGAGCAGAAGAAGAAACTGCAGGCCAAAAAGGATGAGAAGGAGCGACTGCGCAAGGAGAAAACCCTCGTCCGGGACTTCAAGATTAAAgtgctgGACCTGCTGGACGTGTTCCTGTGTAAGCAGGGCagcagtgtgttggtgttgggGTTGGTGGAGCCGCTGCTCAGTGTGATCGAGAACTGCATGAGCTCTGAGAGCGGACAACACGAGCAGGACTTCCTGCGCCGAGCCGCACACatcttcaggaatCAGCTGTGTCGTGGGAAGCATTACTGCAGAGAGGTTGAGGGCCGGGAGGCGGAGCTTCATGACATGCTGGAGCGTCTGATTGGTCGAGCACAGAAGCTGTCAGACTCATCAGTGGCGCTGTATTACTTCAGtgctGCACTCTACTTGGTTAAAGTGTTGAGAGGTGTAATGAAGGACACAGACTCCAAACACACAGCTGAGaagaggACGATGGGTAAAGTGGATGTGGAGAGAGTAACATCATGTTTCAAAGATGCACTCATGTCCTTTATGACGCGACGGAAAAGTCCACTGACAGGAGACATGTTTATTGAACTGTTCAACAGATTCCCTgTTCTGTGTGTGAATCTGTTGGACACAGCGGTGGAGAACATCACGGGCGGAGTCAGAGAACACCAACAGggtcaGGCGTGTGTGATGGCGCTCAGAGCTCTGCAGTGTAAGGAGGTGAAGCAGCTGATGGCCGACGCTCAGTGGACTGAAGTCTGTCAGAAAACCACAGAGCAGCTGGCACAGacTCTGCAGAAGGTGGAGTTTAAGAACAAAGCGGTTCATGAGAAGACGGTGAAAGCGCTGGAGCTCGCTCACTTCCTCATCAAATCTGTTCACCATCAGAAGTTGGAGGTGAAGCTAGAAGGTCTCCGGAACGTTGTGAGGTCCATGAACGCTGATGGGAGTCTGCAGAAGTCGGGGAAGCTGGAGGACACGTACTGGAGCGTCATGAAGCTGTTCGGGCTCCAGAAGCCAAAAGTGGAGAAGGTGAAGAAAGCGAAGGAGGAGGAACAGacagagcaggaggaggagccgaagaaaaagaagaaaggattCCTTCCCGAGAGCAAGAAACGCAAAAACCGCAAGAAGCCTGTGATCCTGGAGGGTAAAGACACTACAGACACGCCCACAccgggaggaggaggaggaggaggagaggaggggaagaagaagagaaagaataataaaaagaagaggACTGAGTCAGAAACACAGAATCAGCCAcctgctaaaaaaaacaaagctcagCAGAATCAGAGTAATGaggagaagaaacagaagaagaagaagcagaagaagaagaagaagagtggaGAGCAGAGCAGCGCTGAGTGAACTGATAAAACAGGAGGATTAAAGGTGTAATCAGGAGTGTTCAGGTTTCACCTCCACACCACAGAGATGATCATCAGCAGCAGTGACTTCAGCAAACCCTGAACTCCTGACGGACGTTATTCACACGCTCATGCTTATTTttgtaaaagaataataataagaagagtGTCATTAAAGACTTTTTACTGTAAAGTCAGAATGTTATTAAACCTCTTTTACTGTACAGAT

Function

symbol description
mybbp1a Predicted to enable sequence-specific DNA binding activity and transcription corepressor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated and rhythmic process. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human MYBBP1A (MYB binding protein 1a).

NR:

description
myb-binding protein 1A-like protein

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K02331 POL5, MYBBP1A; DNA polymerase phi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299336.1 True 4035 mRNA 0.52 27 238817 254544

Neighbor

gene id symbol gene type direction distance location
LOC113528265 NA coding downstream 12113 221429 ~ 226704 (-)
LOC113528268 NA coding downstream 54266 161020 ~ 184551 (-)
LOC117595912 NA coding downstream 104278 126990 ~ 134539 (-)
LOC117595913 NA coding downstream 116156 119182 ~ 122661 (-)
LOC117595914 NA coding downstream 122312 95456 ~ 116505 (-)
fgf10b NA coding upstream 2983 257527 ~ 260223 (-)
adamts12 adamts12 coding upstream 7095 261639 ~ 282406 (-)
lrp13 LOC108255551 coding upstream 118906 373450 ~ 385400 (-)
atp8b5a LOC108255417 coding upstream 185792 440336 ~ 469953 (-)
LOC113528156 LOC108255548 coding upstream 220950 475494 ~ 516272 (-)
G347623 NA non-coding downstream 32524 175023 ~ 206293 (-)
G347652 NA non-coding downstream 100004 120309 ~ 138813 (-)
G347634 NA non-coding downstream 204039 17440 ~ 34778 (-)
G347703 NA non-coding upstream 74370 328914 ~ 329608 (-)
G347704 NA non-coding upstream 78698 333242 ~ 333755 (-)
G347672 NA non-coding upstream 99783 354327 ~ 355340 (-)
G347723 NA non-coding upstream 140823 395367 ~ 397450 (-)
G347753 NA non-coding upstream 273404 527948 ~ 619562 (-)
LOC117595925 NA other downstream 1545 230525 ~ 237272 (-)
LOC113528266 NA other downstream 28112 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 36827 192549 ~ 201990 (-)
LOC117595978 NA other downstream 89011 118198 ~ 149806 (-)
G347628 NA other downstream 113611 87567 ~ 125206 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 109462 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 163763 418307 ~ 466255 (-)
LOC113527995 LOC108255428 other upstream 602236 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 664840 919384 ~ 1701550 (-)
G347960 NA other upstream 822189 1076733 ~ 1079139 (-)

Expression


Co-expression Network