LOC113528156 (LOC108255548)


Basic Information

Item Value
gene id LOC113528156
gene name LOC108255548
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 475494 ~ 516272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299346.1
gggagtgaACATTCAGTCGAGAGAGCGGACGTTCTCCGAGCAAcaagctggagagagagagagagagagagagagagcgcgggAGACGAGGTAACggggtggtgtgtgtagtgtgtagtgtgagtgtgtgtgtgtgtttagggtggATAAGACGTGACACACTACCTACACAGATCACTCCTGTGAACCTGTTGAATTCTCCGAGTGAGACTGGACCATGTCTGAGAACGCCGTGATCAGCGTCGCTCGATATCTGAGCTCAGAGTTCAGAGAATGAGAAAGTTCTGAGTGTGAGACATGGACTAATCCCACAAGCTGCTATCAGCTGATTCATAAATTTCTACATTATTGGAACTTTAAATAATGTGAATTATTCTTTCAACATTGGAATTGGGAGGACCTTTTAGGTGCCCCTGCATCCGTCTAGTTAAAAAATGTTCTCTCGCAATCGCTACAATGGCCAGGACGGGACCGGGGCCCCACAGTACGGCCGACCCAAGAACAAGCCAGTGGTGCACAAGAGGAGGCAGCCGAACCCGAGAGTGGCCATCATGCTACGTGGGAAAATTCACCGTCTCTTACAGGGCTCAGCCGATCACTCTGTCCCAGCTTCACAACTTTACTACGCAGGAATTGAAGAGGAAGATCCAGAAGAGGCTGAGGACATGCGGAAGGTGCAGGGCTGCTACAGGAGGGGAATGGCTTCTGTCGAAGTCTGCAACCTTCCGCAAGTCCCAAATGGGAAAGAACTTGATGGTGTTGCTGGAGCATACTGTGTAGGAGAGGTCGAGTTGAACCAAGAGGGAGGCATACGAATCCCTTGCACCTTGCAACACATCAATCCACCAGAGTTACACAGAACTCAAGATGTCAACGGACCAGGGTTTGCATTTGGCAGAGGACTTGCTGGTGGGACTTCAGCATGTCAGAAAGATCTGCTTTACCGGTTTAACATGGTGATGCAAGACAAGATTGTGGAGGAAGACGAGGATATAGATCAAGAGGAGGAATCGAGTGCCATTATTGAGCATATACTGAAGGAACTAAAGGGCATCAATAAAATCCAGGAGGAAATTTCAGACCTAAGGGAGTATCTGTCTTCTGTTCGTGGGTCTGTTGAAGAAGTGTCCAGCTGTGTGGATGCAGTTTTACTGGAGATTGAAGGCATTCGCTCAGGTACCAGGTCTGGCGTGGAGACATGGCCTGGTGCGGGGTCCAAGCATGATCATCATCAATCTGACAGTCCTTTCAGCGAGACCTGTGACAAACTCCATACTGTAGAATGCATGAGCTGTGGTACGCAAGCAGGGTATAAAGTGTTTGATAAACAACGCAAACAAACGTGTCCCCTGAGCCTTGAAAAAGGCTCCTGTAGAGCTCTATCTAACTTCACCAGTACTAATGATACTGTCCGTGATCCATTTGGGCATGGTATGCCTGTACAGAGCTCAGATTTACCCCCAAGCACAGTAAGAAGGAAGCAAAGCCTTGGCTACCTTGAACACCAAGATGGTCAGGACTGTCTCAGTACTAGCTCTGTTTCCTCAGGTCAGAGTTCCAAGTCCGAATCTGACCAGGAGAGACCTTCTGGATGGGTGCGTGCTACAGATGAAGTGCAGAACTGGGATCAAACAGGCCTGGAACACAGTGGGAGCGGGGAGACGAGATGGAGTGAAGAAGATCCATACTCCAGACAAGGCAGTTTTGAAGAAGGCACTGGAGAGGTAGATACCTGGGATCTTTTGAGAGATGAAGGTGATTGTACTGAACTGGAGGAATCAACTTCAGAGCACATTTCAATCTCTTCCAATCTGCACTACAATTCTCCTGCTAGCACATGTAGTAGGGATGAGTGGCGTGGAAATAGAAGTAAACCAAATCCATACAAGGTGGATGGACATCCTGAGGGCTTAGCTGTGGAGTACAGTGATTTTATAGGTGTTTGTGAGTATTCCAAAACTTCTGGCTATCAAACAACACAACCTTCAACACCATGTCATAACTTCACTGCTGCTGATTGTAAAGAAGATATTACAAGTTCCTCATCTGAGACCTGCACACACCTTGCTTTGAATATGGAGTCTATAGAGAATGCCACTGATCCAGTCACATGGGGATACGCAACAAGCTCTCATGAATACGTTCTTGAACAGGAGCTGGACACCGATGAAAGCAACAGTGTAGGGTTTAACGTTAAGAAGCTTGGAAGAGCAGTGCTGGATTTCAGATCTGCACTGAAGATGGCCCTAAAGAAGCTAGAGGCAGGTGGTGCAACCTCACCAGTGGATAAAGCTGATACGTCAAGTGAGCCTCAAGCAGGGGAAGGCTTGCTGGACAGTGAGTCAACCAGTGAGGAATCACCTTGTATTGTGACCCTTCAAGCAGAAATTTCAAATGCAAACACTTCAGTGCCATCTCAAGGCTGCACACCAGATCCTGACCATGTGGAGCCAAATGAGTCTATCTCGACCCCATCAAATCCTTGTGACACCATACCAGAGTCTGTCGAGACCAGCATACACACTATAGAAACTTTGGATACAGTGCTTTCATCAGAACCGGTCCTCTCTAGTGATACAACATTGCATGCTACTATGGTCACCCATCCTGACTGCCTGACCACCGAATCGcgctccgtctctctgtctgctgagGAGGACAAGCAAGAAACCTCAAAGGAACCCACAGGAGAACAAGCAGAGGATGGAGAACAGGAAGGACACCACCCCGTACAACTGAGCGAGAGAGATGCCCGTAGGCTGAAATGCCTCAGAACCTTCCAGCAGATCcttagagagaagagagagagcagaagacGCCTCGGCATGGTGACCATGTTCTCATTCTCCGAAGGTGATTTCAACCCAGATGGGAGTCAGGATGAAGATCAGacacacagtaaTGATAATGGAGGCTCAAACCAACAGCCATGGACCAGTACTGGtggaggaggaggaggaggagcgatCTTCGGTATTGACAGCATGCCTGATCTGCGCAGGAGGAAGCCGATCCCATTGGTTAGCGAAGTGGCTATGTCCCTGGTGCAGTCCAGAAAAGCCGCCATCTCATATTCACTGGCGTCTCGGCCCTCACTCAAAGACGAGGAgctgAAGAGTCACGTGTACAAGAAAACTCTCCAGGCTCTGATCTACCCCATCTCCTGCACCACGCCGCACAACTTCGAGGTGTGGACGGCCACCACGCCCACCTACTGCTACGAGTGTGAGGGGCTGCTGTGGGGCATCGCGCGCCAGGGCATGAGGTGCACCGAGTGTGGGGTCAAGTGCCACGAGAAGTGCCAAGAGCTCCTCAACGCCGACTGCCTACAGAgaGCGGCGGAGAAGAGCAGTAAGACAGGTGCTGAGGACCGAAACCAGCACATCATCTCAGCCATGAAGGACCGCATGAAGATCCGCGAGAGGAACAAGCCTGAGATCTTCGAGGCCATTCGCACtgtcttcaacatcaccaaacTGAACCATGCCCAGCAGATGAAGACTGTTAAACAGACTGTCCTGGATGGAACGTCCAAATGGTCTGCTAAGATCTCCATTACAGTACTGAGCGCTCAGGGTCTGCAGGCTAAAGACCGCACCGGCTCCAGCGACCCCTACGTCACGGTGCAGGTGGGCAAAACCAAGAAGAGAACCAAGACCATCTACGGAAACCTGAACCCCGTGTGGGAGGAAACGTTCAACTTCGAGTGCCACAACTCATCAGATCGTATAAAAGTCCGCGTGtgggatgaagatgatgatataAAGTCTCGGGTGAAGCAGAGGCTGAAGCGTGAGTCGGATGATTTTCTGGGTCAGAGCATCATCGAGGTCCGGACGCTGAGCGGAGAGATGGACGTGTGGTACAACCTCGagaaGCGCACGGATAAGTCGGCTGTGTCGGGGGCCATCAGGTTGCAGATCAGTGTGGAGATTAAAGGAGAGGAGAAAGTGGCACCGTACCACCTACAGTACACCTGCCTGcatgagaatatcTTCCACTACCTGACAGACATTGAGGGACAGGGTGTGGTGAAGCTGCCTGCTGCTCGAGGTGACGATGCCTGGAAGGTTTATTTTGACGAGGTGGAGCAGGAGATCGTGGACGAGTTCGCCATCCGCTACGGCATCGAGTCCATCTACCAGGCCATgacaCATTTTGCATGTCTCTCCTCTAAGTACATGTGTCCCGGTGTTCCCGCTGTGATGAGCACTCTGCTGGCAAACATCAACGCTTTTCTTTTCGCATCCCACTCCAGCACCAGCTGCTCTCCTTCTCACCAGCCATTAAATGCTTGGCCAACTTCCAACTTCTCAAGAGAGCGCTTCATCAGGCTCCTGGATCAGTTACACAACTCCCTCCGCATTGACCTGTCTACCTACCggaataacTTCCCAGCCAGCAGCAAGCCTCGCCTGTCAGATCTCAAGTCCACTGTAGACCTGCTGACCAGCATCACCTTCTTCAGAAtgaaggtGCAGGAGCTGCAGGCCCCCCCGCGGGCCGCTCACGTGGTGAGGGACTGTGTGAAGGCGTGTCTAAACTCCACGTACGAGTACATCTTCAACAACTGCACTGAGCTCTACAGCACACAGttccagtcacacacacagcctcagaaaagaaagaaagacggggatgaggaggaggagaaagggGAGGAGCtaaaggaggaggaggcgggGCCGAGCATCCTGAACCTGGACTTCTGGCCCAAACTTATCACACTCATAGTGTCTATCATCGAGGAGGACAGGAACTCATACACACCGATTATAAACCagtttccTCAGGAGCTGAATGTAGGGAAACTGAGCGCTGAAGTCATTTGGACACTTTTCGCTCAGGACATGAAGTACGCACTAGAAGaacacgAGAAACACAGGCTGTGTAAGAGTGCCGACTACATGAACCTTCATTTCAAAGTGAAGTGGCTCTACAACGAGTACGTCAAAGATCTGccctctgtctcaaacacagtGCCCGAGTACCCAGCcTGGTTTGTACAGTTTGTGCTGCAGTGGTTGGGTGAGAATGAGGACGTGTCCATGGAGTTCATGCACGGTGCTCTGGAGAGGGACAAGAGAGAagggTTCCAGCCGACGTCTGAGCACGCTCTGTTCTCCTGCTCGGTGGTGGACGTCTTCACACAGCTCAACCAGAGCTTCGATATCATCAAGAAGCTGGACTGTCCCGACCCCGGCATCGCGGCCCAGTACAACCGCCGCTTCGCCAAGACGATCAgtaaagtgctgctgcagtaCTGCGCCTCGCTGTCCAACAGCTTCCCGTCCTACTGCGACAAGGAGAAGACGcccTGTGTGTTGATGAATAATGTGCAGCAGATGCGGGTGATGCTGGAGAAGATGTTTGAGTTTATGGGAGCCAAACAGGATgagaagagagacaaagagaaagagttgGACTCAGAAGCAGCAGAAATCCTGAATGATCTTCAGGTTAAACTCAACACGGTTCTGGACAACCTGAGCGCTGTGTTTGCTAAGAGtttcCAGGCccgtatcagtgtgtgtatgcgtcAGGTGGGTGAGATGGTGTATCAGGTTAAAGGTCCTCTGAACCAGAACTCCAGGAACAGCGCGGAGTCGGACGCCGTCACAGCGCTCAGGCCGCTCATGGAGTTCCTCGACTCACAtctgaGCATATTTGCGGACGTGTGTGAGAAGACGGTGCTAAAGCGGGTGCTGAAGGATCTGTGGAGGAACGTTCTGATCTGCATGGAGAGAAGCATTGTACTGCCCGAGAGCAACGACAGCAtcggTGCTCAGCTTCTCACTGCAGCCAAGGAGCTCTCCAAACTAAAGGGAGGGGGCGAGGCCAAGTACCTGTCTCCAAGGCAGTGTGTGATCATGGAGGCGGCGCTGGACACCATCAAGcATTTCTTCCACGCGGGTGGTGATGGTCTGAAGAAGTCGTATCTGGAGAAGAGTGATGAACTCCGCTCTCTGCATTACGCTCTGTCTCTTTATGCACAGAGCACCGACGAGCTCATCCGCACCTTCATCAACACACAGCACTCacaggTGCACAACGGCACAAGCATGAGGATCACACCTAAAGAGAGCTTACGACCTGAAagagcttCTGGAATTGAGCAGTTTATAGGTGAGGCTGTGATTCAGGTGGACACGCCGCCACTGCCAACCCACTGCCATTACTGTCAAGtgatcgGGGTGAACGATATGAAGTGGCAGACGTCAGGACTGTTCCGTCCGTTTGTGGAAGTCAGCCTGATCGGCCCGATGCTCGCAGATAAGAAGCGAAAATTCACCACCAAGTCCAAGAACAACTGCTGGACGGCCAAATACAGCGAGAGCTTCCTGTAtgttCTGGGTAACGGTGTGAGTGCTGAGTTCTACGAGCTGCAGGTGACGGTGAAGGATTACTGCTTTGGGCGGGCGGACCAGGTGGTGGGCGTGGCCGTGATCCCGTTAGCCCTGGCCGTTGGACCCGAGAGGCGGAGCTTCGTGTGTTGGTGCCCGCTGGCCCCGAGCATCACCACGGATCAGACGGGCACCACGACCCTGCGCATCCTCGCCCAGCGCCATGACGACGAGATTGCCAAGGAGTTCATTCGACTGAAGAGCGAGAGACGACCTACAGAGGAGGgaaggtagagagagagagagagagagagagagagagagaatcagaaaAAGTGCAGGCCAGAAAATGAGGGaagtgacacatacacacacaaatacacgcACAAatacatgcccacacacacacaacacacacacacaaacacacacaaacacacacacacctgtaaaaCACACCTAGgtgtgacaagctgtgtgtgtctTCAGGCTCAAGCTAATCACACTTACCCAGAATCCTTTGCAGAAAACTGATATATTTGAGCAAATAAAAAGATGTCATACATGTatattgttttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgtgtgtaccCAAAGCCAATTCCTTTTTGCCAAACTCAGACTTCTTGCCCTTTATACATTCTTTGCTATTGGTGGCCTTAAAAAGGGGCGGAGTCACAGTTCCTGATTACTGTGGTCTTTTAATCTTACCTTTTGATTgacccccccccaaaaaaagacaaaattccTCAACAAGTCATTTGACAGATATGAACCAATCAGCTAGAGATATTTATCAGAGTGGGCGGAGTCTGTATATGTTATAAACACAGTGGTCATTTAATGGCCTCTCCTCTTAAATGGTCTAAACAAGctccattttacacacacacacacacacacacacacacacacacacacactaatattgcTAATATTCTGAGCTTTACTGCCCAAATATGCTGATCACTGCCATTGGTCAGCTTGCTATGcagtgattggctgagagaCATGACGTGCCAGCTGAGTCGTGCTTTTAGCCAATCACAGGATTGGTCTCAAAATGacgtgtaataataataatcataatcataataataacaataataataatcatcttgTGCCAAACAGATTAGATGTTTAGATTTAACTGCTGATTTATATTTTGTCTCTCCTCATTAATGCACAGGAAACAGTGTCTGTGCACTGAGGAACGCGTTTAGCATGGAGtcactgtacattttattttccgTATTGTCAAAATGTGGaagaagatatttatttagttattattagaTTATCACGGCTGTTACATATTCCTGTATCAACATgtgaattttgtaaataaatgatttatgatGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299346.1 True 7750 mRNA 0.50 36 475494 516272

Neighbor

gene id symbol gene type direction distance location
atp8b5a LOC108255417 coding downstream 5541 440336 ~ 469953 (-)
lrp13 LOC108255551 coding downstream 90094 373450 ~ 385400 (-)
adamts12 adamts12 coding downstream 193088 261639 ~ 282406 (-)
fgf10b NA coding downstream 215271 257527 ~ 260223 (-)
mybbp1a mybbp1a coding downstream 220950 238817 ~ 254544 (-)
LOC113528517 LOC108255548 coding upstream 7535 523807 ~ 577436 (-)
pgam5 pgam5 coding upstream 136717 652989 ~ 658898 (-)
LOC113528030 LOC108255642 coding upstream 321289 837561 ~ 844476 (-)
tal2 LOC108255450 coding upstream 333114 849386 ~ 851691 (-)
LOC113524993 NA coding upstream 410837 927109 ~ 1240090 (-)
G347723 NA non-coding downstream 78044 395367 ~ 397450 (-)
G347672 NA non-coding downstream 120154 354327 ~ 355340 (-)
G347704 NA non-coding downstream 141739 333242 ~ 333755 (-)
G347703 NA non-coding downstream 145886 328914 ~ 329608 (-)
G347623 NA non-coding downstream 269201 175023 ~ 206293 (-)
G347753 NA non-coding upstream 11676 527948 ~ 619562 (-)
G347759 NA non-coding upstream 118487 634759 ~ 638280 (-)
G347821 NA non-coding upstream 126714 642986 ~ 643487 (-)
G347833 NA non-coding upstream 156805 673077 ~ 676630 (-)
G347847 ier3 non-coding upstream 192282 708554 ~ 715445 (-)
rusc2 rusc2,LOC108255549 other downstream 9239 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 107755 364006 ~ 367739 (-)
LOC117595925 NA other downstream 238222 230525 ~ 237272 (-)
LOC113528266 NA other downstream 264789 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 273504 192549 ~ 201990 (-)
LOC113527995 LOC108255428 other upstream 340508 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 403112 919384 ~ 1701550 (-)
G347960 NA other upstream 560461 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 752037 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 840296 1356568 ~ 1369462 (-)

Expression


Co-expression Network