LOC117595981


Basic Information

Item Value
gene id LOC117595981
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1293874 ~ 1297808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299351.1
atGGCTCGTGCAGTTCTGAAAGCTCTGATTTTCCTCACAGtttctcttcatctttcatCAGCAGgagttcACACATGGCAGGAGATGTTTGGCTGTGAGCTCGATGATGACGGCACCACTAGAGGATACAGTCAGTTCGGTTATGATGGAGAAGATTTCATCAGTTTTGATCTGAAGACTAAAACCTGGACTGCAGCTAAACCTCAAGCTGTGATCACCAAACACAAGTGGGATAATGATCCTGGTGTTACTGAGGGCCGGAAGGACTACCTGGAGAACACCTGTATCGAGTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGACTCTGGAGAGGAAAGtttCGTCTCCGGCGGCCAGTGCTCTGAAACACTCTCCTTCTCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGGTGATCTCCTGGCAGAAGGACGGAGAGGAGGTGCATGAGAACGTGGAGCTCAGAGAGACGTTACCCAACCAGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACACCCTACACCTGCTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAGAGGTGGAGCACCGATTGCTATCATCGTTGCTGTAGTCGCGGCTCTCGTTGCTCtcgttgctgttgttgctggaATTGTGGTCTGGAAAAAGAAGAGCTCTGGCTTCAAACCTGTTTCACTAAACTCATCACACTCCTCTGACGAAGATTTACCTCCAAAAGCTTAaagtgtgactgtgtgtcttcctgctgaactgagagagagagaggaggagaggaagatgaggaacacacacacacacacacacattattccaGTGGGTAATCTCGGTGTATgattttcttggtgtttggatGGAGGAGCTTTTTATTGTGCTAAAATTGTAACAGTGTGATTACTGTAGTGAATTTTCACCCAGAGCTGCAGTTTAACATCATTatattccagtgtgtgtgtttcaggagtgTGTATGAGCTTCTTTACtctgtacatttatatttttatactctgtaaatatgtgtataaaaCTTGTTAACACGTTTCAGGTCATGAACCAATAACCCGACATTCCCTTGTGAATTTTCTTGAGACAATTTtgattcattaaattaaattaaaagctgTCCAGGTCCTGAGGCGTCAAACCTGCTACAATCCACagtgctcccaccaccatgcttcacagttggggcGGAGTCTTGGTGTTGGTGTGTAGTGTCttgttttcttcacaaaaagttAACCTCTTGGAGAAGCTGATATAAAAAAGTTTACATAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299351.1 True 1335 mRNA 0.45 7 1293874 1297808

Neighbor

gene id symbol gene type direction distance location
LOC117595953 mvk coding downstream 35932 1251870 ~ 1257942 (-)
LOC113524993 NA coding downstream 53784 927109 ~ 1240090 (-)
LOC117595980 NA coding downstream 53825 1236871 ~ 1240049 (-)
tchp tchp coding downstream 63226 1188924 ~ 1230648 (-)
LOC117595672 mmab coding downstream 185226 1086342 ~ 1108648 (-)
LOC113528146 NA coding upstream 16691 1314499 ~ 1316387 (-)
LOC113524983 NA coding upstream 52508 1350316 ~ 1420706 (-)
LOC113524989 NA coding upstream 127291 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 135198 1433006 ~ 1442192 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 237787 1535595 ~ 1558524 (-)
LOC117595969 NA non-coding downstream 8879 1264805 ~ 1284995 (-)
G347969 NA non-coding downstream 16661 1095034 ~ 1277213 (-)
G348003 NA non-coding downstream 62033 1231235 ~ 1231841 (-)
G347980 fam222a non-coding downstream 116704 1174117 ~ 1177170 (-)
G347963 NA non-coding downstream 190990 1083752 ~ 1102884 (-)
LOC117595965 NA non-coding upstream 11881 1309689 ~ 1311494 (-)
LOC113524984 NA non-coding upstream 41000 1338808 ~ 1339841 (-)
G348011 NA non-coding upstream 104048 1401856 ~ 1402831 (-)
G348012 NA non-coding upstream 111153 1408961 ~ 1463632 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 198602 1496410 ~ 1496871 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 15007 1268309 ~ 1278867 (-)
G347960 NA other downstream 214735 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 369207 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 827619 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 926135 364006 ~ 367739 (-)
LOC113524988 NA other upstream 58760 1356568 ~ 1369462 (-)
LOC117595719 NA other upstream 152527 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 207831 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 530090 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 684246 1982054 ~ 2127645 (-)

Expression


Co-expression Network