LOC113528146


Basic Information

Item Value
gene id LOC113528146
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1314499 ~ 1316387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299352.1
ATGTACGGCTGTGAGCTCGATGATGACGGCACCACTAGAGGATACAGTCAGTGGGGTTATGATGGAGAAGATTTCGTCAGTTTCGATCTGGAAACTCTCACATACACTGCAGCCAAATCTCAAGCTGTGATCACCAAACACAAGTGGGATAATAATCCTGGTGCTACTGTGGCCCGGAAGAACTACCTGGAGAACATCTGTATCGAGTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGACTCTGGAAAGGAAAGttcGTCCCGAGGCGTCAGTGCTCCAGAAACACTCTCCTTCTCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGGTGATCTCCTGGCAGAAGGACGGAGAGGAGGTGCAGGAGGACGTGGAGCTCAGAGAGACGTTACCCAACCAGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAGAGGTGGAGGATCAGATGGAGCACCGATTGCTATCATCGTTGCTGTAGTCGCGGCTCTCGTTGCTCTCGTTGCCGTTGTTGCTGGAATTGTGGtctggaagaagaagaactctgGCTTTAAACCTGTTCCAGCCAAAGCCGCCTCTGAAGGAGATTCTTCCTCCAACAACTCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299352.1 True 708 mRNA 0.51 5 1314499 1316387

Neighbor

gene id symbol gene type direction distance location
LOC117595981 NA coding downstream 16691 1293874 ~ 1297808 (-)
LOC117595953 mvk coding downstream 56557 1251870 ~ 1257942 (-)
LOC117595980 NA coding downstream 74450 1236871 ~ 1240049 (-)
tchp tchp coding downstream 83851 1188924 ~ 1230648 (-)
LOC117595672 mmab coding downstream 205851 1086342 ~ 1108648 (-)
LOC113524983 NA coding upstream 33929 1350316 ~ 1420706 (-)
LOC113524989 NA coding upstream 108712 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 116619 1433006 ~ 1442192 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 219208 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 570265 1886652 ~ 1892126 (-)
LOC117595965 NA non-coding downstream 3005 1309689 ~ 1311494 (-)
LOC117595969 NA non-coding downstream 29504 1264805 ~ 1284995 (-)
G347969 NA non-coding downstream 37286 1095034 ~ 1277213 (-)
G348003 NA non-coding downstream 82658 1231235 ~ 1231841 (-)
G347980 fam222a non-coding downstream 137329 1174117 ~ 1177170 (-)
LOC113524984 NA non-coding upstream 22421 1338808 ~ 1339841 (-)
G348011 NA non-coding upstream 85469 1401856 ~ 1402831 (-)
G348012 NA non-coding upstream 92574 1408961 ~ 1463632 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 180023 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 266333 1582720 ~ 1605702 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 35632 1268309 ~ 1278867 (-)
G347960 NA other downstream 235360 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 389832 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 848244 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 946760 364006 ~ 367739 (-)
LOC113524988 NA other upstream 40181 1356568 ~ 1369462 (-)
LOC117595719 NA other upstream 133948 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 189252 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 511511 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 665667 1982054 ~ 2127645 (-)

Expression


Co-expression Network